Wall clock time and date at job start Mon Mar 30 2020 01:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86803 * 120.00031 * 2 1 4 4 H 1.48497 * 109.47063 * 270.00211 * 3 2 1 5 5 H 1.48499 * 109.47153 * 30.00339 * 3 2 1 6 6 H 1.48497 * 109.46956 * 150.00272 * 3 2 1 7 7 C 1.40346 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.41762 * 120.00012 * 359.97438 * 7 2 1 10 10 O 1.21826 * 119.99856 * 0.02562 * 9 7 2 11 11 C 1.47562 * 120.00103 * 180.02562 * 9 7 2 12 12 C 1.39950 * 120.09400 * 180.02562 * 11 9 7 13 13 C 1.37121 * 119.90488 * 180.02562 * 12 11 9 14 14 C 1.39159 * 120.09627 * 359.97438 * 13 12 11 15 15 O 1.35656 * 119.90748 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99903 * 185.36136 * 15 14 13 17 17 C 1.53181 * 109.54151 * 155.48268 * 16 15 14 18 18 C 1.53090 * 109.16289 * 176.84443 * 17 16 15 19 19 O 1.42895 * 109.41553 * 302.39423 * 18 17 16 20 20 C 1.42898 * 114.10078 * 61.15684 * 19 18 17 21 21 C 1.53097 * 109.41446 * 298.84086 * 20 19 18 22 22 C 1.39168 * 120.18644 * 0.25856 * 14 13 12 23 23 C 1.37120 * 120.09357 * 359.48663 * 22 14 13 24 24 H 0.97008 * 120.00142 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.04912 * 359.97438 * 12 11 9 26 26 H 1.07999 * 119.95115 * 179.97438 * 13 12 11 27 27 H 1.08993 * 109.61332 * 35.26289 * 16 15 14 28 28 H 1.09005 * 109.52064 * 56.94217 * 17 16 15 29 29 H 1.09001 * 109.52460 * 296.75910 * 17 16 15 30 30 H 1.09000 * 109.47965 * 62.37935 * 18 17 16 31 31 H 1.08999 * 109.47882 * 182.39536 * 18 17 16 32 32 H 1.09007 * 109.48309 * 58.82422 * 20 19 18 33 33 H 1.09003 * 109.48470 * 178.86066 * 20 19 18 34 34 H 1.09005 * 109.51801 * 177.51102 * 21 20 19 35 35 H 1.08999 * 109.52232 * 297.69752 * 21 20 19 36 36 H 1.07996 * 119.95239 * 179.71919 * 22 14 13 37 37 H 1.07998 * 120.04437 * 180.25463 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4368 2.6527 0.7001 6 1 3.5368 1.4401 0.7000 7 6 2.0070 -1.2154 -0.0005 8 1 3.0870 -1.2154 -0.0010 9 6 1.2982 -2.4431 -0.0005 10 8 0.0799 -2.4431 -0.0005 11 6 2.0360 -3.7211 -0.0005 12 6 1.3382 -4.9342 -0.0011 13 6 2.0277 -6.1194 -0.0006 14 6 3.4193 -6.1172 0.0000 15 8 4.0976 -7.2920 0.0010 16 6 5.5199 -7.2199 0.1205 17 6 6.0521 -8.5320 0.7050 18 6 7.5811 -8.4757 0.7558 19 8 8.0917 -8.2396 -0.5578 20 6 7.6655 -7.0043 -1.1361 21 6 6.1398 -7.0014 -1.2630 22 6 4.1172 -4.9131 0.0054 23 6 3.4355 -3.7234 -0.0004 24 1 -0.4851 0.8401 0.0004 25 1 0.2582 -4.9369 -0.0011 26 1 1.4900 -7.0560 -0.0006 27 1 5.7904 -6.3924 0.7762 28 1 5.7390 -9.3648 0.0752 29 1 5.6588 -8.6681 1.7124 30 1 7.8934 -7.6681 1.4178 31 1 7.9674 -9.4233 1.1312 32 1 7.9788 -6.1773 -0.4988 33 1 8.1126 -6.8919 -2.1239 34 1 5.8094 -6.0427 -1.6629 35 1 5.8285 -7.8032 -1.9325 36 1 5.1971 -4.9158 0.0104 37 1 3.9778 -2.7894 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233516324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:05 Heat of formation + Delta-G solvation = -128.519209 kcal Electronic energy + Delta-G solvation = -20727.781412 eV Core-core repulsion = 17434.182875 eV Total energy + Delta-G solvation = -3293.598536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54478 -40.04249 -38.99783 -37.49023 -34.79378 -33.87620 -32.28865 -31.99671 -31.03598 -28.65693 -26.03340 -24.74620 -24.07063 -23.45931 -21.70792 -21.02671 -19.31914 -18.61556 -17.73523 -17.33782 -17.08462 -16.51036 -16.17813 -15.95994 -15.65157 -15.62972 -14.92548 -14.65555 -14.61133 -14.34556 -14.15956 -14.00118 -13.36735 -13.30964 -13.13028 -12.88708 -12.63424 -12.49030 -12.32471 -12.21945 -12.05002 -11.56969 -11.49571 -11.31175 -10.99436 -10.67939 -10.00055 -9.62561 -9.05019 -8.34917 -7.08268 0.19621 0.46466 1.38244 1.38784 1.55617 2.09351 2.20361 2.20813 2.84111 2.93075 3.61783 3.65260 3.74062 3.84983 3.89794 3.94346 4.00920 4.22827 4.25066 4.26997 4.46208 4.51349 4.58300 4.62180 4.74038 4.78855 4.79237 5.00730 5.04601 5.08576 5.13382 5.19758 5.32141 5.43833 5.72774 5.79661 5.96509 6.20156 6.45943 6.69116 6.79754 8.24617 8.48753 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.003805 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.032484 B = 7356.924936 C = 8160.427145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.021 3.979 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.243 1.243 7 C -0.543 4.543 8 H 0.097 0.903 9 C 0.363 3.637 10 O -0.601 6.601 11 C -0.180 4.180 12 C -0.067 4.067 13 C -0.163 4.163 14 C 0.130 3.870 15 O -0.315 6.315 16 C 0.073 3.927 17 C -0.148 4.148 18 C 0.064 3.936 19 O -0.399 6.399 20 C 0.065 3.935 21 C -0.181 4.181 22 C -0.209 4.209 23 C -0.052 4.052 24 H 0.282 0.718 25 H 0.112 0.888 26 H 0.144 0.856 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.157 0.843 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.307 -12.305 0.842 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.198 4.198 3 Si 0.815 3.185 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.115 0.885 9 C 0.264 3.736 10 O -0.496 6.496 11 C -0.181 4.181 12 C -0.085 4.085 13 C -0.182 4.182 14 C 0.085 3.915 15 O -0.229 6.229 16 C 0.018 3.982 17 C -0.185 4.185 18 C -0.012 4.012 19 O -0.318 6.318 20 C -0.012 4.012 21 C -0.219 4.219 22 C -0.227 4.227 23 C -0.070 4.070 24 H 0.092 0.908 25 H 0.130 0.870 26 H 0.161 0.839 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.175 0.825 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.632 -12.617 0.738 21.694 hybrid contribution -0.587 1.042 0.022 1.196 sum 17.045 -11.575 0.760 20.618 Atomic orbital electron populations 1.70115 1.10091 1.29886 1.31682 1.27328 0.95511 1.05737 0.91195 0.85030 0.79129 0.74518 0.79824 1.18242 1.19425 1.16612 1.21463 0.96221 0.92182 1.47489 0.88484 1.18818 0.88212 0.88472 0.78101 1.90442 1.17261 1.89830 1.52079 1.21475 0.95655 0.96361 1.04644 1.21005 0.99826 0.91558 0.96118 1.20307 0.91543 0.98388 1.07934 1.19176 0.91421 0.85093 0.95826 1.86034 1.21362 1.27800 1.87666 1.22737 0.77409 1.00510 0.97581 1.22305 0.97392 0.95912 1.02920 1.22735 0.90587 1.03757 0.84150 1.87926 1.71856 1.40167 1.31862 1.22660 0.91655 0.86477 1.00360 1.22797 0.97912 1.03881 0.97289 1.21292 1.01066 0.91061 1.09286 1.21269 0.92574 0.98708 0.94497 0.90759 0.86962 0.83861 0.89800 0.90536 0.88979 0.91448 0.86243 0.91400 0.87075 0.90107 0.90810 0.82514 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.13 11.73 21.89 0.26 -46.87 16 2 C 0.02 1.14 5.50 85.40 0.47 1.61 16 3 Si 1.00 38.84 29.56 68.60 2.03 40.87 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.24 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.54 -30.35 8.86 23.65 0.21 -30.14 16 8 H 0.10 4.74 6.01 -2.91 -0.02 4.72 16 9 C 0.36 21.70 6.91 25.60 0.18 21.88 16 10 O -0.60 -41.05 14.89 -4.75 -0.07 -41.12 16 11 C -0.18 -8.77 5.89 -19.99 -0.12 -8.89 16 12 C -0.07 -2.96 9.57 22.42 0.21 -2.75 16 13 C -0.16 -5.89 9.95 22.23 0.22 -5.67 16 14 C 0.13 4.22 6.62 22.71 0.15 4.37 16 15 O -0.31 -8.66 9.80 -89.71 -0.88 -9.54 16 16 C 0.07 1.48 2.19 30.71 0.07 1.54 16 17 C -0.15 -2.33 5.79 30.68 0.18 -2.15 16 18 C 0.06 0.82 6.84 72.01 0.49 1.31 16 19 O -0.40 -6.86 10.76 -148.98 -1.60 -8.46 16 20 C 0.07 0.95 6.84 72.01 0.49 1.45 16 21 C -0.18 -3.33 5.42 30.68 0.17 -3.17 16 22 C -0.21 -6.55 8.24 22.23 0.18 -6.37 16 23 C -0.05 -2.05 9.41 22.42 0.21 -1.84 16 24 H 0.28 15.01 8.29 -92.70 -0.77 14.24 16 25 H 0.11 5.29 7.65 -2.91 -0.02 5.26 16 26 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.08 1.57 6.30 -2.39 -0.02 1.55 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.56 6.90 -2.38 -0.02 1.55 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.16 3.69 5.38 -2.91 -0.02 3.68 16 37 H 0.14 5.10 6.19 -2.91 -0.02 5.08 16 Total: -1.00 -75.67 307.86 3.93 -71.74 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 1.09 Total: 22.21 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.12 Total: -28.81 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.26 Total: -46.87 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -2.55 Total: -59.12 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -75.67 3.93 -71.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233516324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.783 kcal (2) G-P(sol) polarization free energy of solvation -75.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds