Wall clock time and date at job start Mon Mar 30 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30540 * 1 3 3 Si 1.86798 * 119.99754 * 2 1 4 4 H 1.48505 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46933 * 299.99744 * 3 2 1 6 6 H 1.48499 * 109.47304 * 59.99725 * 3 2 1 7 7 C 1.40326 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.41832 * 119.99405 * 0.02562 * 7 2 1 10 10 O 1.21812 * 120.00328 * 0.02562 * 9 7 2 11 11 C 1.47532 * 119.99501 * 180.02562 * 9 7 2 12 12 C 1.39845 * 120.20850 * 359.97438 * 11 9 7 13 13 C 1.37701 * 119.90357 * 179.97438 * 12 11 9 14 14 C 1.38689 * 120.31959 * 0.02562 * 13 12 11 15 15 C 1.38088 * 120.41847 * 359.97438 * 14 13 12 16 16 C 1.38669 * 120.09135 * 359.97438 * 15 14 13 17 17 O 1.35629 * 120.16015 * 179.97438 * 16 15 14 18 18 C 1.42903 * 117.00145 * 5.54927 * 17 16 15 19 19 C 1.53184 * 109.53992 * 274.88247 * 18 17 16 20 20 C 1.53102 * 109.15535 * 183.24213 * 19 18 17 21 21 O 1.42902 * 109.48802 * 57.47270 * 20 19 18 22 22 C 1.42907 * 114.09967 * 298.88514 * 21 20 19 23 23 C 1.53100 * 109.41154 * 61.16074 * 22 21 20 24 24 H 0.96992 * 120.00435 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.04729 * 0.26007 * 12 11 9 26 26 H 1.08002 * 119.84168 * 180.02562 * 13 12 11 27 27 H 1.08005 * 119.78952 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.95243 * 179.97438 * 15 14 13 29 29 H 1.09002 * 109.54281 * 35.05651 * 18 17 16 30 30 H 1.08997 * 109.51980 * 303.05430 * 19 18 17 31 31 H 1.08998 * 109.52321 * 63.24731 * 19 18 17 32 32 H 1.09008 * 109.40312 * 297.49142 * 20 19 18 33 33 H 1.08999 * 109.49207 * 177.50707 * 20 19 18 34 34 H 1.09001 * 109.48177 * 301.17882 * 22 21 20 35 35 H 1.08994 * 109.49095 * 181.14330 * 22 21 20 36 36 H 1.08997 * 109.51901 * 182.48705 * 23 22 21 37 37 H 1.08999 * 109.57004 * 62.32581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6994 1.3465 -0.0006 5 1 1.8805 2.3964 -1.2126 6 1 1.8805 2.3965 1.2124 7 6 2.0071 -1.2152 0.0005 8 1 3.0871 -1.2151 0.0010 9 6 1.2980 -2.4435 0.0005 10 8 0.0799 -2.4435 -0.0004 11 6 2.0357 -3.7211 0.0017 12 6 3.4342 -3.7261 0.0022 13 6 4.1164 -4.9222 0.0038 14 6 3.4234 -6.1235 0.0044 15 6 2.0425 -6.1341 0.0038 16 6 1.3381 -4.9396 0.0033 17 8 -0.0181 -4.9483 0.0023 18 6 -0.6589 -6.2198 0.1249 19 6 -0.7768 -6.8695 -1.2573 20 6 -1.5358 -8.1928 -1.1273 21 8 -2.8189 -7.9513 -0.5464 22 6 -2.7686 -7.3890 0.7665 23 6 -2.0611 -6.0324 0.7123 24 1 -0.4850 0.8399 -0.0004 25 1 3.9783 -2.7931 0.0061 26 1 5.1964 -4.9249 0.0047 27 1 3.9671 -7.0567 0.0052 28 1 1.5105 -7.0739 0.0039 29 1 -0.0716 -6.8623 0.7809 30 1 -1.3203 -6.2037 -1.9276 31 1 0.2195 -7.0573 -1.6577 32 1 -0.9706 -8.8734 -0.4904 33 1 -1.6616 -8.6384 -2.1140 34 1 -2.2196 -8.0591 1.4281 35 1 -3.7823 -7.2554 1.1440 36 1 -1.9825 -5.6222 1.7190 37 1 -2.6310 -5.3483 0.0835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:07 Heat of formation + Delta-G solvation = -101.737894 kcal Electronic energy + Delta-G solvation = -21457.670441 eV Core-core repulsion = 18165.233230 eV Total energy + Delta-G solvation = -3292.437211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10427 -38.72009 -36.83685 -35.96900 -32.74201 -32.41730 -31.21585 -30.50123 -29.07333 -26.69990 -24.73878 -23.66615 -22.80336 -21.61903 -20.16639 -19.59384 -17.63075 -16.66004 -16.24499 -16.08598 -15.45075 -15.03216 -14.98613 -14.49379 -14.44717 -14.13537 -13.32958 -13.28178 -13.05557 -12.84669 -12.37308 -12.32112 -11.84727 -11.45066 -11.35170 -11.33667 -11.21739 -11.09381 -10.88637 -10.51509 -10.38006 -10.24027 -10.14690 -10.05805 -9.67631 -8.93791 -8.20524 -7.43554 -7.33311 -6.21637 -4.82024 1.80327 2.06649 3.06653 3.15632 3.19854 3.63818 3.85544 4.04762 4.08549 4.65368 4.75194 4.81705 4.93738 5.06757 5.15203 5.29035 5.33934 5.38896 5.46741 5.59231 5.60353 5.67759 5.84705 5.88804 5.93210 6.01069 6.16710 6.24326 6.30819 6.39658 6.69695 6.92847 6.94660 7.09938 7.16664 7.31400 7.48750 8.09504 8.15323 8.86475 8.91610 10.39939 10.63380 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.005380 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.995540 B = 5203.344290 C = 6354.017379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.081 3.919 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.390 3.610 10 O -0.518 6.518 11 C -0.137 4.137 12 C -0.059 4.059 13 C -0.176 4.176 14 C -0.093 4.093 15 C -0.231 4.231 16 C 0.150 3.850 17 O -0.260 6.260 18 C 0.080 3.920 19 C -0.183 4.183 20 C 0.067 3.933 21 O -0.383 6.383 22 C 0.067 3.933 23 C -0.150 4.150 24 H 0.272 0.728 25 H 0.135 0.865 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -13.070 0.555 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.284 3.716 10 O -0.405 6.405 11 C -0.138 4.138 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.111 4.111 15 C -0.250 4.250 16 C 0.104 3.896 17 O -0.172 6.172 18 C 0.023 3.977 19 C -0.221 4.221 20 C -0.010 4.010 21 O -0.302 6.302 22 C -0.010 4.010 23 C -0.188 4.188 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.288 -12.903 0.446 12.913 hybrid contribution 1.128 0.596 0.127 1.282 sum 1.416 -12.307 0.573 12.401 Atomic orbital electron populations 1.69976 1.07450 1.27763 1.31507 1.25960 0.94597 1.00821 0.92817 0.86367 0.80827 0.81560 0.78454 1.18433 1.19924 1.19924 1.20935 0.94787 0.91613 1.47980 0.90955 1.18002 0.88642 0.85352 0.79640 1.90549 1.14562 1.88104 1.47284 1.21577 0.93871 0.95697 1.02705 1.21416 0.93041 0.98014 0.95213 1.20949 0.99273 0.92676 1.06541 1.20807 0.93299 0.97573 0.99465 1.21100 0.95326 0.96555 1.12000 1.19426 0.82645 0.93357 0.94206 1.86533 1.15802 1.28441 1.86384 1.22341 0.93998 0.85543 0.95859 1.22819 1.02171 0.98276 0.98813 1.22534 0.84344 0.95309 0.98823 1.87922 1.28333 1.82773 1.31161 1.22588 1.01519 0.92604 0.84271 1.22228 0.94659 0.98716 1.03209 0.91707 0.84761 0.86766 0.86953 0.86382 0.91638 0.89635 0.90249 0.93279 0.88567 0.93183 0.88184 0.89814 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.58 11.73 55.57 0.65 -20.93 16 2 C 0.08 2.20 5.50 -17.32 -0.10 2.10 16 3 Si 0.90 19.51 29.56 -169.99 -5.03 14.48 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.52 -14.56 8.86 -37.42 -0.33 -14.89 16 8 H 0.07 1.83 6.02 -52.49 -0.32 1.51 16 9 C 0.39 11.33 6.91 -34.42 -0.24 11.09 16 10 O -0.52 -16.78 13.72 -16.74 -0.23 -17.01 16 11 C -0.14 -3.32 5.90 -104.69 -0.62 -3.94 16 12 C -0.06 -1.20 9.43 -39.18 -0.37 -1.57 16 13 C -0.18 -2.98 10.02 -39.61 -0.40 -3.38 16 14 C -0.09 -1.49 10.04 -39.47 -0.40 -1.89 16 15 C -0.23 -4.06 8.28 -39.48 -0.33 -4.38 16 16 C 0.15 3.30 6.62 -38.61 -0.26 3.05 16 17 O -0.26 -5.84 7.89 -40.42 -0.32 -6.16 16 18 C 0.08 1.32 2.19 -26.54 -0.06 1.26 16 19 C -0.18 -2.62 5.43 -26.58 -0.14 -2.77 16 20 C 0.07 0.77 6.84 37.21 0.25 1.03 16 21 O -0.38 -5.10 10.77 -35.23 -0.38 -5.48 16 22 C 0.07 0.79 6.84 37.21 0.25 1.05 16 23 C -0.15 -2.26 5.79 -26.59 -0.15 -2.42 16 24 H 0.27 7.12 8.29 -40.82 -0.34 6.79 16 25 H 0.13 2.63 6.20 -52.48 -0.33 2.30 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.12 1.74 5.39 -52.49 -0.28 1.46 16 29 H 0.07 0.97 6.32 -51.93 -0.33 0.65 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.09 6.90 -51.93 -0.36 0.74 16 32 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -34.15 305.88 -8.12 -42.27 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.55 Total: 3.87 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.87 Total: -15.65 kcal Atomic # 7 Polarization: -21.58 SS G_CDS: 0.65 Total: -20.93 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.93 Total: -28.65 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.15 -8.12 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.473 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds