Wall clock time and date at job start Mon Mar 30 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30540 * 1 3 3 Si 1.86798 * 119.99754 * 2 1 4 4 H 1.48505 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46933 * 299.99744 * 3 2 1 6 6 H 1.48499 * 109.47304 * 59.99725 * 3 2 1 7 7 C 1.40326 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.41832 * 119.99405 * 0.02562 * 7 2 1 10 10 O 1.21812 * 120.00328 * 0.02562 * 9 7 2 11 11 C 1.47532 * 119.99501 * 180.02562 * 9 7 2 12 12 C 1.39845 * 120.20850 * 359.97438 * 11 9 7 13 13 C 1.37701 * 119.90357 * 179.97438 * 12 11 9 14 14 C 1.38689 * 120.31959 * 0.02562 * 13 12 11 15 15 C 1.38088 * 120.41847 * 359.97438 * 14 13 12 16 16 C 1.38669 * 120.09135 * 359.97438 * 15 14 13 17 17 O 1.35629 * 120.16015 * 179.97438 * 16 15 14 18 18 C 1.42903 * 117.00145 * 5.54927 * 17 16 15 19 19 C 1.53184 * 109.53992 * 274.88247 * 18 17 16 20 20 C 1.53102 * 109.15535 * 183.24213 * 19 18 17 21 21 O 1.42902 * 109.48802 * 57.47270 * 20 19 18 22 22 C 1.42907 * 114.09967 * 298.88514 * 21 20 19 23 23 C 1.53100 * 109.41154 * 61.16074 * 22 21 20 24 24 H 0.96992 * 120.00435 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.04729 * 0.26007 * 12 11 9 26 26 H 1.08002 * 119.84168 * 180.02562 * 13 12 11 27 27 H 1.08005 * 119.78952 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.95243 * 179.97438 * 15 14 13 29 29 H 1.09002 * 109.54281 * 35.05651 * 18 17 16 30 30 H 1.08997 * 109.51980 * 303.05430 * 19 18 17 31 31 H 1.08998 * 109.52321 * 63.24731 * 19 18 17 32 32 H 1.09008 * 109.40312 * 297.49142 * 20 19 18 33 33 H 1.08999 * 109.49207 * 177.50707 * 20 19 18 34 34 H 1.09001 * 109.48177 * 301.17882 * 22 21 20 35 35 H 1.08994 * 109.49095 * 181.14330 * 22 21 20 36 36 H 1.08997 * 109.51901 * 182.48705 * 23 22 21 37 37 H 1.08999 * 109.57004 * 62.32581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6994 1.3465 -0.0006 5 1 1.8805 2.3964 -1.2126 6 1 1.8805 2.3965 1.2124 7 6 2.0071 -1.2152 0.0005 8 1 3.0871 -1.2151 0.0010 9 6 1.2980 -2.4435 0.0005 10 8 0.0799 -2.4435 -0.0004 11 6 2.0357 -3.7211 0.0017 12 6 3.4342 -3.7261 0.0022 13 6 4.1164 -4.9222 0.0038 14 6 3.4234 -6.1235 0.0044 15 6 2.0425 -6.1341 0.0038 16 6 1.3381 -4.9396 0.0033 17 8 -0.0181 -4.9483 0.0023 18 6 -0.6589 -6.2198 0.1249 19 6 -0.7768 -6.8695 -1.2573 20 6 -1.5358 -8.1928 -1.1273 21 8 -2.8189 -7.9513 -0.5464 22 6 -2.7686 -7.3890 0.7665 23 6 -2.0611 -6.0324 0.7123 24 1 -0.4850 0.8399 -0.0004 25 1 3.9783 -2.7931 0.0061 26 1 5.1964 -4.9249 0.0047 27 1 3.9671 -7.0567 0.0052 28 1 1.5105 -7.0739 0.0039 29 1 -0.0716 -6.8623 0.7809 30 1 -1.3203 -6.2037 -1.9276 31 1 0.2195 -7.0573 -1.6577 32 1 -0.9706 -8.8734 -0.4904 33 1 -1.6616 -8.6384 -2.1140 34 1 -2.2196 -8.0591 1.4281 35 1 -3.7823 -7.2554 1.1440 36 1 -1.9825 -5.6222 1.7190 37 1 -2.6310 -5.3483 0.0835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:07 Heat of formation + Delta-G solvation = -124.108503 kcal Electronic energy + Delta-G solvation = -21458.640504 eV Core-core repulsion = 18165.233230 eV Total energy + Delta-G solvation = -3293.407274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47695 -39.98710 -38.46928 -37.78795 -34.74314 -33.77750 -32.35645 -32.02713 -30.55321 -28.73219 -25.90060 -24.85110 -24.37258 -23.02370 -21.62761 -21.16367 -19.10862 -18.49397 -17.63443 -17.21091 -17.09596 -16.45697 -16.18311 -16.03023 -15.65076 -15.52673 -14.97358 -14.83813 -14.58126 -14.24836 -13.99001 -13.72670 -13.33099 -13.26225 -12.90953 -12.74928 -12.63757 -12.48036 -12.35169 -12.09507 -11.98768 -11.70715 -11.53346 -11.34101 -10.99463 -10.71725 -9.73787 -9.47221 -8.98058 -8.28373 -7.02277 0.25772 0.60062 1.36099 1.36360 1.54910 2.21037 2.28337 2.33123 2.89187 2.90942 3.60414 3.62700 3.80191 3.84117 3.87958 3.99554 4.05245 4.18780 4.25861 4.33665 4.43044 4.54986 4.56285 4.63612 4.66333 4.74548 4.88328 4.95827 5.04522 5.12097 5.17143 5.22904 5.42396 5.54340 5.70944 5.96145 6.07257 6.15604 6.65953 6.73768 6.90459 8.33413 8.55561 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.005380 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.995540 B = 5203.344290 C = 6354.017379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.022 3.978 3 Si 0.995 3.005 4 H -0.242 1.242 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.092 0.908 9 C 0.365 3.635 10 O -0.575 6.575 11 C -0.197 4.197 12 C -0.064 4.064 13 C -0.168 4.168 14 C -0.070 4.070 15 C -0.225 4.225 16 C 0.130 3.870 17 O -0.307 6.307 18 C 0.069 3.931 19 C -0.176 4.176 20 C 0.070 3.930 21 O -0.399 6.399 22 C 0.075 3.925 23 C -0.152 4.152 24 H 0.279 0.721 25 H 0.132 0.868 26 H 0.157 0.843 27 H 0.166 0.834 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 -15.605 0.825 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.196 4.196 3 Si 0.813 3.187 4 H -0.165 1.165 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.110 0.890 9 C 0.263 3.737 10 O -0.467 6.467 11 C -0.199 4.199 12 C -0.082 4.082 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.243 4.243 16 C 0.084 3.916 17 O -0.220 6.220 18 C 0.013 3.987 19 C -0.214 4.214 20 C -0.007 4.007 21 O -0.318 6.318 22 C -0.002 4.002 23 C -0.190 4.190 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.175 0.825 27 H 0.184 0.816 28 H 0.168 0.832 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.220 -15.464 0.715 15.812 hybrid contribution 0.252 1.261 0.043 1.287 sum 3.473 -14.203 0.758 14.641 Atomic orbital electron populations 1.70143 1.10008 1.29466 1.32743 1.27270 0.95474 1.05565 0.91264 0.85017 0.79730 0.75067 0.78837 1.16478 1.19057 1.18963 1.21458 0.95950 0.92342 1.48464 0.88976 1.18776 0.88470 0.88156 0.78324 1.90482 1.16752 1.89571 1.49894 1.21264 0.95619 0.94731 1.08239 1.21486 0.91482 0.99889 0.95324 1.21378 1.01299 0.91400 1.04532 1.21453 0.92637 0.99343 0.95386 1.21442 0.96313 0.95920 1.10636 1.19687 0.82819 0.94266 0.94821 1.86484 1.16751 1.32123 1.86676 1.22725 0.94165 0.84117 0.97672 1.22775 1.02697 0.99178 0.96777 1.22694 0.83614 0.93743 1.00612 1.87909 1.29475 1.82558 1.31839 1.22659 1.02443 0.90648 0.84405 1.22288 0.94340 1.00489 1.01858 0.91069 0.85000 0.82537 0.81647 0.83171 0.89333 0.92862 0.89431 0.90289 0.86584 0.90322 0.86545 0.90568 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -49.38 11.73 21.88 0.26 -49.13 16 2 C 0.02 1.25 5.50 85.39 0.47 1.71 16 3 Si 1.00 40.95 29.56 68.60 2.03 42.98 16 4 H -0.24 -9.12 7.11 99.48 0.71 -8.42 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.55 -32.35 8.86 23.67 0.21 -32.14 16 8 H 0.09 4.80 6.02 -2.92 -0.02 4.78 16 9 C 0.36 22.80 6.91 25.61 0.18 22.98 16 10 O -0.57 -40.69 13.72 16.17 0.22 -40.46 16 11 C -0.20 -10.01 5.90 -19.91 -0.12 -10.13 16 12 C -0.06 -2.58 9.43 22.53 0.21 -2.37 16 13 C -0.17 -5.06 10.02 22.25 0.22 -4.84 16 14 C -0.07 -1.90 10.04 22.34 0.22 -1.68 16 15 C -0.22 -7.29 8.28 22.34 0.18 -7.11 16 16 C 0.13 5.88 6.62 22.90 0.15 6.03 16 17 O -0.31 -14.72 7.89 -68.54 -0.54 -15.26 16 18 C 0.07 2.32 2.19 30.72 0.07 2.39 16 19 C -0.18 -5.01 5.43 30.69 0.17 -4.85 16 20 C 0.07 1.44 6.84 72.02 0.49 1.93 16 21 O -0.40 -9.95 10.77 -148.98 -1.60 -11.55 16 22 C 0.07 1.67 6.84 72.02 0.49 2.17 16 23 C -0.15 -4.81 5.79 30.69 0.18 -4.63 16 24 H 0.28 15.50 8.29 -92.71 -0.77 14.73 16 25 H 0.13 5.19 6.20 -2.91 -0.02 5.17 16 26 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 28 H 0.15 3.80 5.39 -2.91 -0.02 3.78 16 29 H 0.09 2.48 6.32 -2.39 -0.02 2.46 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.29 6.90 -2.39 -0.02 2.28 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -84.23 305.88 4.58 -79.65 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 1.09 Total: 24.31 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 3.13 Total: -30.53 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.26 Total: -49.13 kcal Atomic # 8 Polarization: -65.36 SS G_CDS: -1.92 Total: -67.28 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -84.23 4.58 -79.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.461 kcal (2) G-P(sol) polarization free energy of solvation -84.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds