Wall clock time and date at job start Mon Mar 30 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30549 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48495 * 109.47473 * 239.99818 * 3 2 1 5 5 H 1.48493 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46541 * 120.00017 * 3 2 1 7 7 C 1.40326 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.41827 * 120.00029 * 359.97438 * 7 2 1 10 10 O 1.21816 * 120.00396 * 0.02562 * 9 7 2 11 11 C 1.47540 * 119.99869 * 180.02562 * 9 7 2 12 12 C 1.39844 * 120.20466 * 359.97438 * 11 9 7 13 13 C 1.37699 * 119.89938 * 180.02562 * 12 11 9 14 14 C 1.38685 * 120.32229 * 0.02562 * 13 12 11 15 15 C 1.38094 * 120.41810 * 359.97438 * 14 13 12 16 16 C 1.38670 * 120.09024 * 359.97438 * 15 14 13 17 17 O 1.35629 * 120.15713 * 180.02562 * 16 15 14 18 18 C 1.42892 * 117.00508 * 354.59620 * 17 16 15 19 19 H 1.08999 * 109.52286 * 324.83109 * 18 17 16 20 20 C 1.53173 * 109.52883 * 204.70174 * 18 17 16 21 21 C 1.53172 * 109.04024 * 183.11380 * 20 18 17 22 22 C 1.53092 * 109.16628 * 56.98283 * 21 20 18 23 23 O 1.42902 * 109.41031 * 302.39639 * 22 21 20 24 24 C 1.42896 * 114.10365 * 61.15539 * 23 22 21 25 25 H 0.96999 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.04826 * 0.02562 * 12 11 9 27 27 H 1.07999 * 119.83944 * 179.72095 * 13 12 11 28 28 H 1.08001 * 119.79068 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.95286 * 179.97438 * 15 14 13 30 30 H 1.09003 * 109.54391 * 302.98471 * 20 18 17 31 31 H 1.09005 * 109.53932 * 63.24578 * 20 18 17 32 32 H 1.09001 * 109.52238 * 176.88949 * 21 20 18 33 33 H 1.08997 * 109.52549 * 297.01306 * 21 20 18 34 34 H 1.09003 * 109.47793 * 62.37245 * 22 21 20 35 35 H 1.08996 * 109.48335 * 182.40772 * 22 21 20 36 36 H 1.08999 * 109.48395 * 178.85667 * 24 23 22 37 37 H 1.08995 * 109.48055 * 58.82207 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.0933 1.6964 -1.2124 5 1 1.2746 2.7464 0.0006 6 1 3.0932 1.6962 1.2126 7 6 2.0071 -1.2153 -0.0005 8 1 3.0870 -1.2153 -0.0001 9 6 1.2979 -2.4435 -0.0005 10 8 0.0797 -2.4435 -0.0005 11 6 2.0355 -3.7213 -0.0005 12 6 3.4340 -3.7263 -0.0011 13 6 4.1161 -4.9225 -0.0016 14 6 3.4230 -6.1237 -0.0022 15 6 2.0421 -6.1342 -0.0016 16 6 1.3378 -4.9396 0.0000 17 8 -0.0185 -4.9483 0.0010 18 6 -0.6593 -6.2198 -0.1195 19 1 -0.0728 -6.8625 -0.7761 20 6 -2.0620 -6.0328 -0.7057 21 6 -2.7672 -7.3915 -0.7575 22 6 -2.8012 -7.9941 0.6494 23 8 -1.4672 -8.1123 1.1478 24 6 -0.7747 -6.8676 1.2629 25 1 -0.4850 0.8401 0.0004 26 1 3.9781 -2.7934 -0.0011 27 1 5.1961 -4.9252 -0.0066 28 1 3.9667 -7.0569 -0.0030 29 1 1.5100 -7.0739 -0.0025 30 1 -2.6322 -5.3497 -0.0761 31 1 -1.9845 -5.6235 -1.7131 32 1 -3.7859 -7.2595 -1.1220 33 1 -2.2243 -8.0584 -1.4273 34 1 -3.3793 -7.3462 1.3084 35 1 -3.2639 -8.9802 0.6114 36 1 0.2225 -7.0424 1.6668 37 1 -1.3263 -6.2051 1.9298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:16 Heat of formation + Delta-G solvation = -101.810465 kcal Electronic energy + Delta-G solvation = -21468.133085 eV Core-core repulsion = 18175.692727 eV Total energy + Delta-G solvation = -3292.440358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11821 -38.68805 -36.77099 -35.96796 -33.24606 -32.59270 -30.79733 -30.26614 -28.92476 -26.65297 -25.06090 -23.64646 -22.86479 -21.47156 -20.20681 -19.54774 -17.60644 -16.66952 -16.33899 -16.14097 -15.44345 -15.16664 -15.00920 -14.49888 -14.03520 -13.99663 -13.52908 -13.29779 -12.94596 -12.67205 -12.61531 -12.28397 -11.92844 -11.49655 -11.38150 -11.27562 -11.11254 -11.00733 -10.85826 -10.81373 -10.51970 -10.32974 -10.12813 -10.07195 -9.42980 -8.92433 -8.19327 -7.43581 -7.34076 -6.21932 -4.82458 1.81527 2.06754 3.09697 3.14872 3.16763 3.49992 4.02112 4.04542 4.09963 4.66444 4.75900 4.82819 4.90337 4.97611 5.14667 5.31213 5.34695 5.43174 5.57552 5.62377 5.71296 5.75397 5.81491 5.88549 5.93759 5.95188 6.16087 6.19083 6.28587 6.38668 6.70499 6.92229 6.95723 7.07745 7.18035 7.31136 7.49596 8.08409 8.13671 8.85889 8.91188 10.39595 10.62893 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.005403 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.040505 B = 5181.145903 C = 6322.496427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.081 3.919 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.391 3.609 10 O -0.519 6.519 11 C -0.136 4.136 12 C -0.059 4.059 13 C -0.175 4.175 14 C -0.092 4.092 15 C -0.231 4.231 16 C 0.147 3.853 17 O -0.258 6.258 18 C 0.047 3.953 19 H 0.074 0.926 20 C -0.117 4.117 21 C -0.150 4.150 22 C 0.055 3.945 23 O -0.379 6.379 24 C 0.038 3.962 25 H 0.273 0.727 26 H 0.135 0.865 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -12.099 -0.250 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.284 3.716 10 O -0.406 6.406 11 C -0.137 4.137 12 C -0.077 4.077 13 C -0.193 4.193 14 C -0.110 4.110 15 C -0.249 4.249 16 C 0.100 3.900 17 O -0.170 6.170 18 C -0.010 4.010 19 H 0.092 0.908 20 C -0.155 4.155 21 C -0.188 4.188 22 C -0.022 4.022 23 O -0.298 6.298 24 C -0.039 4.039 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.180 -12.061 -0.184 12.120 hybrid contribution 0.678 0.763 -0.129 1.029 sum -0.502 -11.298 -0.313 11.314 Atomic orbital electron populations 1.69964 1.07446 1.27955 1.31380 1.25957 0.94605 1.00794 0.92808 0.86471 0.80110 0.80794 0.79782 1.18972 1.20353 1.18968 1.20873 0.94741 0.91632 1.48078 0.91031 1.17983 0.88625 0.85330 0.79620 1.90544 1.14564 1.88108 1.47405 1.21565 0.93876 0.95637 1.02672 1.21409 0.93017 0.98017 0.95279 1.20959 0.99299 0.92672 1.06388 1.20820 0.93294 0.97614 0.99309 1.21166 0.95434 0.96657 1.11683 1.19434 0.82523 0.93420 0.94587 1.86522 1.15964 1.27928 1.86581 1.22973 0.94902 0.85891 0.97250 0.90780 1.21596 0.93789 0.97236 1.02843 1.22196 1.01605 0.96795 0.98225 1.22650 0.84162 1.01509 0.93833 1.87924 1.26713 1.29592 1.85529 1.23175 0.98221 0.85916 0.96592 0.91613 0.84753 0.86733 0.86855 0.86079 0.90220 0.90343 0.90163 0.90999 0.92826 0.88791 0.88334 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.48 11.73 55.57 0.65 -20.83 16 2 C 0.08 2.20 5.50 -17.31 -0.10 2.11 16 3 Si 0.90 19.44 29.56 -169.99 -5.03 14.41 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.52 -14.50 8.86 -37.43 -0.33 -14.83 16 8 H 0.07 1.79 6.02 -52.49 -0.32 1.47 16 9 C 0.39 11.30 6.91 -34.42 -0.24 11.06 16 10 O -0.52 -16.69 13.72 -16.75 -0.23 -16.92 16 11 C -0.14 -3.29 5.90 -104.69 -0.62 -3.91 16 12 C -0.06 -1.20 9.43 -39.18 -0.37 -1.57 16 13 C -0.17 -2.97 10.02 -39.61 -0.40 -3.37 16 14 C -0.09 -1.50 10.04 -39.47 -0.40 -1.89 16 15 C -0.23 -4.13 8.27 -39.47 -0.33 -4.45 16 16 C 0.15 3.23 6.62 -38.61 -0.26 2.97 16 17 O -0.26 -5.77 7.89 -40.42 -0.32 -6.09 16 18 C 0.05 0.80 2.31 -26.59 -0.06 0.74 16 19 H 0.07 1.18 6.32 -51.93 -0.33 0.85 16 20 C -0.12 -1.75 5.68 -26.55 -0.15 -1.90 16 21 C -0.15 -1.67 6.14 -26.59 -0.16 -1.84 16 22 C 0.06 0.61 6.84 37.21 0.25 0.87 16 23 O -0.38 -5.32 10.76 -35.23 -0.38 -5.70 16 24 C 0.04 0.58 6.13 37.21 0.23 0.81 16 25 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 26 H 0.13 2.61 6.20 -52.49 -0.33 2.29 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.89 5.40 -52.49 -0.28 1.60 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.49 6.90 -51.93 -0.36 1.13 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -33.50 305.87 -8.16 -41.66 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.55 Total: 4.07 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -2.92 Total: -15.21 kcal Atomic # 7 Polarization: -21.48 SS G_CDS: 0.65 Total: -20.83 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.93 Total: -28.71 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.50 -8.16 -41.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.152 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds