Wall clock time and date at job start Mon Mar 30 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30549 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48495 * 109.47473 * 239.99818 * 3 2 1 5 5 H 1.48493 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46541 * 120.00017 * 3 2 1 7 7 C 1.40326 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.41827 * 120.00029 * 359.97438 * 7 2 1 10 10 O 1.21816 * 120.00396 * 0.02562 * 9 7 2 11 11 C 1.47540 * 119.99869 * 180.02562 * 9 7 2 12 12 C 1.39844 * 120.20466 * 359.97438 * 11 9 7 13 13 C 1.37699 * 119.89938 * 180.02562 * 12 11 9 14 14 C 1.38685 * 120.32229 * 0.02562 * 13 12 11 15 15 C 1.38094 * 120.41810 * 359.97438 * 14 13 12 16 16 C 1.38670 * 120.09024 * 359.97438 * 15 14 13 17 17 O 1.35629 * 120.15713 * 180.02562 * 16 15 14 18 18 C 1.42892 * 117.00508 * 354.59620 * 17 16 15 19 19 H 1.08999 * 109.52286 * 324.83109 * 18 17 16 20 20 C 1.53173 * 109.52883 * 204.70174 * 18 17 16 21 21 C 1.53172 * 109.04024 * 183.11380 * 20 18 17 22 22 C 1.53092 * 109.16628 * 56.98283 * 21 20 18 23 23 O 1.42902 * 109.41031 * 302.39639 * 22 21 20 24 24 C 1.42896 * 114.10365 * 61.15539 * 23 22 21 25 25 H 0.96999 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.04826 * 0.02562 * 12 11 9 27 27 H 1.07999 * 119.83944 * 179.72095 * 13 12 11 28 28 H 1.08001 * 119.79068 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.95286 * 179.97438 * 15 14 13 30 30 H 1.09003 * 109.54391 * 302.98471 * 20 18 17 31 31 H 1.09005 * 109.53932 * 63.24578 * 20 18 17 32 32 H 1.09001 * 109.52238 * 176.88949 * 21 20 18 33 33 H 1.08997 * 109.52549 * 297.01306 * 21 20 18 34 34 H 1.09003 * 109.47793 * 62.37245 * 22 21 20 35 35 H 1.08996 * 109.48335 * 182.40772 * 22 21 20 36 36 H 1.08999 * 109.48395 * 178.85667 * 24 23 22 37 37 H 1.08995 * 109.48055 * 58.82207 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.0933 1.6964 -1.2124 5 1 1.2746 2.7464 0.0006 6 1 3.0932 1.6962 1.2126 7 6 2.0071 -1.2153 -0.0005 8 1 3.0870 -1.2153 -0.0001 9 6 1.2979 -2.4435 -0.0005 10 8 0.0797 -2.4435 -0.0005 11 6 2.0355 -3.7213 -0.0005 12 6 3.4340 -3.7263 -0.0011 13 6 4.1161 -4.9225 -0.0016 14 6 3.4230 -6.1237 -0.0022 15 6 2.0421 -6.1342 -0.0016 16 6 1.3378 -4.9396 0.0000 17 8 -0.0185 -4.9483 0.0010 18 6 -0.6593 -6.2198 -0.1195 19 1 -0.0728 -6.8625 -0.7761 20 6 -2.0620 -6.0328 -0.7057 21 6 -2.7672 -7.3915 -0.7575 22 6 -2.8012 -7.9941 0.6494 23 8 -1.4672 -8.1123 1.1478 24 6 -0.7747 -6.8676 1.2629 25 1 -0.4850 0.8401 0.0004 26 1 3.9781 -2.7934 -0.0011 27 1 5.1961 -4.9252 -0.0066 28 1 3.9667 -7.0569 -0.0030 29 1 1.5100 -7.0739 -0.0025 30 1 -2.6322 -5.3497 -0.0761 31 1 -1.9845 -5.6235 -1.7131 32 1 -3.7859 -7.2595 -1.1220 33 1 -2.2243 -8.0584 -1.4273 34 1 -3.3793 -7.3462 1.3084 35 1 -3.2639 -8.9802 0.6114 36 1 0.2225 -7.0424 1.6668 37 1 -1.3263 -6.2051 1.9298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:16 Heat of formation + Delta-G solvation = -123.201234 kcal Electronic energy + Delta-G solvation = -21469.060659 eV Core-core repulsion = 18175.692727 eV Total energy + Delta-G solvation = -3293.367932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51902 -40.01022 -38.43178 -37.78260 -34.73116 -34.34912 -32.31640 -31.58083 -30.41364 -28.67512 -26.19682 -24.86661 -24.54588 -22.85281 -21.68490 -21.10102 -19.10652 -18.48763 -17.67210 -17.44465 -17.15241 -16.51651 -16.23918 -16.08394 -15.44821 -15.29056 -14.98319 -14.95255 -14.56614 -14.05549 -13.98704 -13.82876 -13.45926 -13.26025 -12.97745 -12.75482 -12.62965 -12.29336 -12.27311 -12.14336 -12.09091 -11.90049 -11.74719 -11.35287 -10.95321 -10.58429 -9.74374 -9.46891 -8.99367 -8.27362 -7.01178 0.25271 0.58433 1.37178 1.40784 1.52554 2.19835 2.22123 2.29252 2.87741 2.92662 3.54513 3.61394 3.77154 3.80957 3.92843 3.98532 4.01656 4.06201 4.29641 4.31745 4.47110 4.55119 4.56539 4.63170 4.70858 4.77422 4.89037 4.92689 5.00862 5.15669 5.18551 5.23486 5.40979 5.54065 5.69980 5.93864 6.00317 6.08936 6.62873 6.74535 6.89898 8.34046 8.56125 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.005403 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.040505 B = 5181.145903 C = 6322.496427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.023 3.977 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.551 4.551 8 H 0.092 0.908 9 C 0.366 3.634 10 O -0.574 6.574 11 C -0.193 4.193 12 C -0.063 4.063 13 C -0.166 4.166 14 C -0.071 4.071 15 C -0.226 4.226 16 C 0.128 3.872 17 O -0.300 6.300 18 C 0.041 3.959 19 H 0.086 0.914 20 C -0.120 4.120 21 C -0.139 4.139 22 C 0.048 3.952 23 O -0.382 6.382 24 C 0.050 3.950 25 H 0.279 0.721 26 H 0.135 0.865 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.146 0.854 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -14.066 -0.425 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.582 4.582 8 H 0.110 0.890 9 C 0.264 3.736 10 O -0.466 6.466 11 C -0.195 4.195 12 C -0.081 4.081 13 C -0.183 4.183 14 C -0.089 4.089 15 C -0.244 4.244 16 C 0.082 3.918 17 O -0.213 6.213 18 C -0.016 4.016 19 H 0.104 0.896 20 C -0.158 4.158 21 C -0.176 4.176 22 C -0.028 4.028 23 O -0.301 6.301 24 C -0.028 4.028 25 H 0.089 0.911 26 H 0.153 0.847 27 H 0.176 0.824 28 H 0.182 0.818 29 H 0.164 0.836 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.182 -14.057 -0.360 14.111 hybrid contribution -0.055 1.225 -0.086 1.229 sum 1.127 -12.831 -0.446 12.889 Atomic orbital electron populations 1.70134 1.09954 1.29574 1.32577 1.27249 0.95476 1.05480 0.91268 0.85123 0.78509 0.74458 0.80639 1.17470 1.19548 1.17491 1.21405 0.95973 0.92330 1.48523 0.88955 1.18736 0.88471 0.88026 0.78382 1.90477 1.16677 1.89523 1.49950 1.21269 0.95616 0.94634 1.07965 1.21502 0.91468 0.99901 0.95233 1.21385 1.01346 0.91323 1.04285 1.21440 0.92568 0.99420 0.95447 1.21447 0.96463 0.95891 1.10644 1.19677 0.82726 0.94245 0.95193 1.86474 1.16810 1.31199 1.86843 1.23273 0.95336 0.84413 0.98531 0.89597 1.21667 0.93269 0.99459 1.01366 1.22177 1.02527 0.94142 0.98767 1.22945 0.82921 1.03492 0.93482 1.87919 1.28032 1.28394 1.85736 1.22945 0.98428 0.86163 0.95249 0.91054 0.84744 0.82414 0.81834 0.83629 0.92391 0.91668 0.87758 0.89797 0.92846 0.85362 0.88078 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.77 11.73 21.89 0.26 -48.52 16 2 C 0.02 1.30 5.50 85.39 0.47 1.77 16 3 Si 0.99 40.54 29.56 68.60 2.03 42.57 16 4 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.55 -32.06 8.86 23.67 0.21 -31.85 16 8 H 0.09 4.74 6.02 -2.91 -0.02 4.73 16 9 C 0.37 22.65 6.91 25.61 0.18 22.82 16 10 O -0.57 -40.11 13.72 16.16 0.22 -39.88 16 11 C -0.19 -9.79 5.90 -19.91 -0.12 -9.90 16 12 C -0.06 -2.54 9.43 22.53 0.21 -2.33 16 13 C -0.17 -5.04 10.02 22.25 0.22 -4.82 16 14 C -0.07 -2.00 10.04 22.34 0.22 -1.77 16 15 C -0.23 -7.67 8.27 22.34 0.18 -7.48 16 16 C 0.13 5.80 6.62 22.90 0.15 5.95 16 17 O -0.30 -14.33 7.89 -68.54 -0.54 -14.87 16 18 C 0.04 1.43 2.31 30.69 0.07 1.50 16 19 H 0.09 2.69 6.32 -2.39 -0.02 2.68 16 20 C -0.12 -3.75 5.68 30.71 0.17 -3.57 16 21 C -0.14 -2.89 6.14 30.68 0.19 -2.70 16 22 C 0.05 0.97 6.84 72.01 0.49 1.46 16 23 O -0.38 -10.14 10.76 -148.98 -1.60 -11.74 16 24 C 0.05 1.53 6.13 72.02 0.44 1.97 16 25 H 0.28 15.41 8.29 -92.71 -0.77 14.64 16 26 H 0.13 5.23 6.20 -2.91 -0.02 5.21 16 27 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.15 4.14 5.40 -2.91 -0.02 4.12 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 3.01 6.90 -2.39 -0.02 3.00 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -80.91 305.87 4.55 -76.35 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 1.09 Total: 25.03 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.10 Total: -28.95 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.26 Total: -48.52 kcal Atomic # 8 Polarization: -64.57 SS G_CDS: -1.92 Total: -66.49 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -80.91 4.55 -76.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.846 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds