Wall clock time and date at job start Mon Mar 30 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48502 * 109.47221 * 274.98007 * 3 2 1 5 5 H 1.48496 * 109.46779 * 34.98294 * 3 2 1 6 6 H 1.48501 * 109.46954 * 154.98238 * 3 2 1 7 7 C 1.40346 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00020 * 173.41825 * 7 2 1 9 9 C 1.41768 * 119.99871 * 353.40958 * 7 2 1 10 10 O 1.21819 * 119.99703 * 7.57202 * 9 7 2 11 11 C 1.47572 * 119.99867 * 187.57235 * 9 7 2 12 12 C 1.39947 * 120.09117 * 180.02562 * 11 9 7 13 13 C 1.37118 * 119.90320 * 180.02562 * 12 11 9 14 14 C 1.39167 * 120.09408 * 0.02562 * 13 12 11 15 15 O 1.35664 * 119.90575 * 179.97438 * 14 13 12 16 16 C 1.42898 * 117.00089 * 354.51043 * 15 14 13 17 17 H 1.09001 * 109.52176 * 324.23436 * 16 15 14 18 18 C 1.53172 * 109.52391 * 204.10712 * 16 15 14 19 19 C 1.53178 * 109.03789 * 183.11059 * 18 16 15 20 20 C 1.53100 * 109.21016 * 56.95026 * 19 18 16 21 21 O 1.42902 * 109.41187 * 302.48749 * 20 19 18 22 22 C 1.42902 * 114.15415 * 61.06471 * 21 20 19 23 23 C 1.39159 * 120.18839 * 0.25505 * 14 13 12 24 24 C 1.37125 * 120.09666 * 359.48373 * 23 14 13 25 25 H 0.97000 * 119.99627 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.04805 * 0.04398 * 12 11 9 27 27 H 1.07997 * 119.95648 * 179.97438 * 13 12 11 28 28 H 1.09006 * 109.54164 * 63.24182 * 18 16 15 29 29 H 1.09001 * 109.54549 * 302.98150 * 18 16 15 30 30 H 1.09001 * 109.52404 * 176.88167 * 19 18 16 31 31 H 1.08996 * 109.52388 * 297.01634 * 19 18 16 32 32 H 1.09003 * 109.48023 * 62.40907 * 20 19 18 33 33 H 1.09000 * 109.47666 * 182.43934 * 20 19 18 34 34 H 1.09000 * 109.47997 * 178.89135 * 22 21 20 35 35 H 1.08996 * 109.49408 * 58.85853 * 22 21 20 36 36 H 1.08007 * 119.95555 * 179.72108 * 23 14 13 37 37 H 1.08003 * 120.05151 * 180.25318 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.3816 2.1072 -1.3948 5 1 1.4934 2.6199 0.8027 6 1 3.5856 1.4120 0.5921 7 6 2.0071 -1.2154 -0.0005 8 1 3.0817 -1.2185 -0.1077 9 6 1.3052 -2.4392 0.1398 10 8 0.0872 -2.4482 0.1223 11 6 2.0502 -3.7020 0.3072 12 6 1.3593 -4.9112 0.4454 13 6 2.0554 -6.0822 0.6012 14 6 3.4468 -6.0694 0.6226 15 8 4.1317 -7.2302 0.7775 16 6 3.3633 -8.4076 1.0332 17 1 2.5066 -8.1549 1.6579 18 6 4.2347 -9.4411 1.7533 19 6 3.4247 -10.7259 1.9524 20 6 2.9329 -11.2272 0.5919 21 8 2.1562 -10.2064 -0.0380 22 6 2.8751 -8.9978 -0.2924 23 6 4.1376 -4.8685 0.4914 24 6 3.4495 -3.6935 0.3298 25 1 -0.4849 0.8401 0.0004 26 1 0.2795 -4.9220 0.4290 27 1 1.5231 -7.0158 0.7083 28 1 4.5399 -9.0485 2.7233 29 1 5.1177 -9.6564 1.1515 30 1 4.0548 -11.4859 2.4145 31 1 2.5693 -10.5211 2.5960 32 1 3.7892 -11.4713 -0.0368 33 1 2.3196 -12.1173 0.7326 34 1 2.2196 -8.2827 -0.7892 35 1 3.7312 -9.2117 -0.9322 36 1 5.2175 -4.8623 0.5130 37 1 3.9864 -2.7624 0.2239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:20 Heat of formation + Delta-G solvation = -106.862464 kcal Electronic energy + Delta-G solvation = -20686.769459 eV Core-core repulsion = 17394.110030 eV Total energy + Delta-G solvation = -3292.659429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41782 -38.86330 -37.40239 -35.71640 -33.54237 -32.70261 -31.08043 -30.40157 -29.20432 -26.65134 -25.36868 -24.05122 -22.44654 -22.00140 -20.34381 -19.63753 -18.00002 -16.98843 -16.58389 -16.28157 -15.57946 -15.42035 -15.33463 -14.41016 -14.15643 -14.06554 -13.81745 -13.21327 -13.20705 -12.93542 -12.76988 -12.46919 -12.30825 -11.86320 -11.67852 -11.44608 -11.26992 -11.20975 -11.09331 -10.82414 -10.49841 -10.46952 -10.35118 -9.95269 -9.66840 -8.97531 -8.46866 -7.48845 -7.48397 -6.32605 -4.90779 1.81268 2.00562 3.04087 3.12051 3.12457 3.16333 3.74231 3.99114 4.02239 4.41735 4.49959 4.54945 4.65192 4.68087 4.86468 5.05109 5.25064 5.29266 5.36707 5.41868 5.45687 5.53065 5.61352 5.78667 5.79840 5.82765 5.93002 6.06592 6.13012 6.30557 6.62832 6.83694 6.85654 7.03678 7.24018 7.33018 7.37336 7.81089 8.02952 8.78290 8.83218 10.29897 10.51831 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044820 B = 0.003425 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.569887 B = 8173.392194 C = 8586.826550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.080 3.920 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.518 4.518 8 H 0.075 0.925 9 C 0.389 3.611 10 O -0.544 6.544 11 C -0.135 4.135 12 C -0.055 4.055 13 C -0.220 4.220 14 C 0.107 3.893 15 O -0.309 6.309 16 C 0.053 3.947 17 H 0.083 0.917 18 C -0.118 4.118 19 C -0.153 4.153 20 C 0.054 3.946 21 O -0.374 6.374 22 C 0.037 3.963 23 C -0.162 4.162 24 C -0.057 4.057 25 H 0.274 0.726 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.122 0.878 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 -17.041 2.508 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.549 4.549 8 H 0.093 0.907 9 C 0.285 3.715 10 O -0.434 6.434 11 C -0.136 4.136 12 C -0.074 4.074 13 C -0.238 4.238 14 C 0.063 3.937 15 O -0.224 6.224 16 C -0.004 4.004 17 H 0.100 0.900 18 C -0.155 4.155 19 C -0.190 4.190 20 C -0.023 4.023 21 O -0.293 6.293 22 C -0.040 4.040 23 C -0.181 4.181 24 C -0.075 4.075 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.139 0.861 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.268 -17.061 2.449 19.116 hybrid contribution 0.693 0.736 0.148 1.022 sum 8.961 -16.325 2.597 18.802 Atomic orbital electron populations 1.69967 1.07590 1.28109 1.30741 1.26013 0.94624 1.01045 0.92695 0.86364 0.80616 0.81004 0.79025 1.19470 1.20103 1.18401 1.20927 0.95416 0.91826 1.46764 0.90726 1.18078 0.88388 0.85758 0.79264 1.90500 1.15124 1.87811 1.49957 1.21842 0.94189 0.97727 0.99887 1.21083 1.00460 0.91049 0.94792 1.21058 0.92739 0.99407 1.10638 1.19150 0.90558 0.85319 0.98699 1.85987 1.35585 1.14156 1.86656 1.22965 0.95393 0.84681 0.97344 0.89958 1.21641 0.98544 0.93869 1.01489 1.22206 1.00856 0.97250 0.98712 1.22669 0.96087 0.90964 0.92534 1.87992 1.38069 1.23330 1.79906 1.23185 0.97869 0.86925 0.96040 1.20236 0.99647 0.89983 1.08230 1.21287 0.94054 0.97028 0.95179 0.91493 0.85453 0.86070 0.90383 0.90681 0.90021 0.90610 0.92919 0.88513 0.87809 0.92057 0.86007 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.19 11.76 55.57 0.65 -20.54 16 2 C 0.08 2.14 5.49 -17.31 -0.10 2.04 16 3 Si 0.91 19.16 29.57 -169.99 -5.03 14.13 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.52 -14.20 8.82 -37.44 -0.33 -14.53 16 8 H 0.07 1.84 6.07 -52.49 -0.32 1.52 16 9 C 0.39 11.07 6.90 -34.43 -0.24 10.83 16 10 O -0.54 -17.40 14.92 5.08 0.08 -17.32 16 11 C -0.14 -3.19 5.89 -104.81 -0.62 -3.81 16 12 C -0.06 -1.19 9.57 -39.35 -0.38 -1.56 16 13 C -0.22 -3.93 8.20 -39.64 -0.33 -4.25 16 14 C 0.11 1.85 6.61 -38.89 -0.26 1.59 16 15 O -0.31 -4.65 9.80 -18.69 -0.18 -4.84 16 16 C 0.05 0.65 2.31 -26.59 -0.06 0.59 16 17 H 0.08 1.06 6.35 -51.93 -0.33 0.73 16 18 C -0.12 -1.12 5.68 -26.55 -0.15 -1.27 16 19 C -0.15 -1.16 6.13 -26.59 -0.16 -1.32 16 20 C 0.05 0.45 6.85 37.21 0.25 0.70 16 21 O -0.37 -4.39 10.76 -35.23 -0.38 -4.77 16 22 C 0.04 0.44 6.11 37.21 0.23 0.67 16 23 C -0.16 -2.88 9.95 -39.64 -0.39 -3.27 16 24 C -0.06 -1.16 9.41 -39.34 -0.37 -1.53 16 25 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 26 H 0.13 2.79 7.65 -52.49 -0.40 2.39 16 27 H 0.12 1.88 5.35 -52.49 -0.28 1.60 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.34 6.81 -51.93 -0.35 0.98 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.14 2.62 6.22 -52.48 -0.33 2.29 16 LS Contribution 307.85 15.07 4.64 4.64 Total: -1.00 -32.72 307.85 -7.64 -40.36 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.53 Total: 3.46 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.90 Total: -15.13 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.65 Total: -20.54 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.49 Total: -26.93 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.72 -7.64 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.501 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds