Wall clock time and date at job start Mon Mar 30 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48502 * 109.47221 * 274.98007 * 3 2 1 5 5 H 1.48496 * 109.46779 * 34.98294 * 3 2 1 6 6 H 1.48501 * 109.46954 * 154.98238 * 3 2 1 7 7 C 1.40346 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00020 * 173.41825 * 7 2 1 9 9 C 1.41768 * 119.99871 * 353.40958 * 7 2 1 10 10 O 1.21819 * 119.99703 * 7.57202 * 9 7 2 11 11 C 1.47572 * 119.99867 * 187.57235 * 9 7 2 12 12 C 1.39947 * 120.09117 * 180.02562 * 11 9 7 13 13 C 1.37118 * 119.90320 * 180.02562 * 12 11 9 14 14 C 1.39167 * 120.09408 * 0.02562 * 13 12 11 15 15 O 1.35664 * 119.90575 * 179.97438 * 14 13 12 16 16 C 1.42898 * 117.00089 * 354.51043 * 15 14 13 17 17 H 1.09001 * 109.52176 * 324.23436 * 16 15 14 18 18 C 1.53172 * 109.52391 * 204.10712 * 16 15 14 19 19 C 1.53178 * 109.03789 * 183.11059 * 18 16 15 20 20 C 1.53100 * 109.21016 * 56.95026 * 19 18 16 21 21 O 1.42902 * 109.41187 * 302.48749 * 20 19 18 22 22 C 1.42902 * 114.15415 * 61.06471 * 21 20 19 23 23 C 1.39159 * 120.18839 * 0.25505 * 14 13 12 24 24 C 1.37125 * 120.09666 * 359.48373 * 23 14 13 25 25 H 0.97000 * 119.99627 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.04805 * 0.04398 * 12 11 9 27 27 H 1.07997 * 119.95648 * 179.97438 * 13 12 11 28 28 H 1.09006 * 109.54164 * 63.24182 * 18 16 15 29 29 H 1.09001 * 109.54549 * 302.98150 * 18 16 15 30 30 H 1.09001 * 109.52404 * 176.88167 * 19 18 16 31 31 H 1.08996 * 109.52388 * 297.01634 * 19 18 16 32 32 H 1.09003 * 109.48023 * 62.40907 * 20 19 18 33 33 H 1.09000 * 109.47666 * 182.43934 * 20 19 18 34 34 H 1.09000 * 109.47997 * 178.89135 * 22 21 20 35 35 H 1.08996 * 109.49408 * 58.85853 * 22 21 20 36 36 H 1.08007 * 119.95555 * 179.72108 * 23 14 13 37 37 H 1.08003 * 120.05151 * 180.25318 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.3816 2.1072 -1.3948 5 1 1.4934 2.6199 0.8027 6 1 3.5856 1.4120 0.5921 7 6 2.0071 -1.2154 -0.0005 8 1 3.0817 -1.2185 -0.1077 9 6 1.3052 -2.4392 0.1398 10 8 0.0872 -2.4482 0.1223 11 6 2.0502 -3.7020 0.3072 12 6 1.3593 -4.9112 0.4454 13 6 2.0554 -6.0822 0.6012 14 6 3.4468 -6.0694 0.6226 15 8 4.1317 -7.2302 0.7775 16 6 3.3633 -8.4076 1.0332 17 1 2.5066 -8.1549 1.6579 18 6 4.2347 -9.4411 1.7533 19 6 3.4247 -10.7259 1.9524 20 6 2.9329 -11.2272 0.5919 21 8 2.1562 -10.2064 -0.0380 22 6 2.8751 -8.9978 -0.2924 23 6 4.1376 -4.8685 0.4914 24 6 3.4495 -3.6935 0.3298 25 1 -0.4849 0.8401 0.0004 26 1 0.2795 -4.9220 0.4290 27 1 1.5231 -7.0158 0.7083 28 1 4.5399 -9.0485 2.7233 29 1 5.1177 -9.6564 1.1515 30 1 4.0548 -11.4859 2.4145 31 1 2.5693 -10.5211 2.5960 32 1 3.7892 -11.4713 -0.0368 33 1 2.3196 -12.1173 0.7326 34 1 2.2196 -8.2827 -0.7892 35 1 3.7312 -9.2117 -0.9322 36 1 5.2175 -4.8623 0.5130 37 1 3.9864 -2.7624 0.2239 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:20 Heat of formation + Delta-G solvation = -128.043996 kcal Electronic energy + Delta-G solvation = -20687.687959 eV Core-core repulsion = 17394.110030 eV Total energy + Delta-G solvation = -3293.577930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58762 -40.07093 -38.98485 -37.48350 -34.80271 -34.34418 -32.34599 -31.77608 -30.68926 -28.61915 -26.17175 -25.17150 -24.07385 -23.24495 -21.49403 -21.23346 -19.30789 -18.65644 -17.69567 -17.51498 -17.22129 -16.63263 -16.23182 -16.01307 -15.53979 -15.36432 -15.00365 -14.73214 -14.46840 -14.29687 -14.05002 -13.95806 -13.59631 -13.50843 -13.01404 -12.97579 -12.70962 -12.50164 -12.20031 -12.04981 -12.03560 -11.94901 -11.62730 -11.31480 -10.98828 -10.54364 -10.00036 -9.62561 -9.06267 -8.35974 -7.07080 0.18413 0.45885 1.38705 1.39324 1.57077 1.99617 2.19628 2.21872 2.83127 2.92184 3.55884 3.61722 3.72596 3.79154 3.88335 3.91739 4.00504 4.07006 4.26610 4.35567 4.43195 4.51394 4.55064 4.65784 4.71406 4.75315 4.86035 4.96310 5.05374 5.09977 5.19338 5.21268 5.30742 5.43391 5.72816 5.76106 5.97933 6.09136 6.42637 6.69625 6.79661 8.24175 8.48495 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044820 B = 0.003425 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.569887 B = 8173.392194 C = 8586.826550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.021 3.979 3 Si 0.997 3.003 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.242 1.242 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.364 3.636 10 O -0.602 6.602 11 C -0.178 4.178 12 C -0.068 4.068 13 C -0.211 4.211 14 C 0.126 3.874 15 O -0.304 6.304 16 C 0.045 3.955 17 H 0.075 0.925 18 C -0.115 4.115 19 C -0.147 4.147 20 C 0.045 3.955 21 O -0.394 6.394 22 C 0.040 3.960 23 C -0.156 4.156 24 C -0.052 4.052 25 H 0.282 0.718 26 H 0.106 0.894 27 H 0.144 0.856 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.301 -18.302 3.024 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.198 4.198 3 Si 0.815 3.185 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.116 0.884 9 C 0.264 3.736 10 O -0.497 6.497 11 C -0.179 4.179 12 C -0.086 4.086 13 C -0.229 4.229 14 C 0.081 3.919 15 O -0.218 6.218 16 C -0.011 4.011 17 H 0.093 0.907 18 C -0.152 4.152 19 C -0.184 4.184 20 C -0.031 4.031 21 O -0.313 6.313 22 C -0.037 4.037 23 C -0.174 4.174 24 C -0.071 4.071 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.161 0.839 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.582 -18.362 2.968 21.912 hybrid contribution -0.298 0.885 0.002 0.933 sum 11.285 -17.478 2.970 21.015 Atomic orbital electron populations 1.70119 1.10123 1.29905 1.31685 1.27340 0.95495 1.05767 0.91150 0.85011 0.79316 0.74535 0.79607 1.18310 1.19410 1.16523 1.21463 0.96739 0.92340 1.46846 0.88378 1.18823 0.88156 0.88294 0.78286 1.90438 1.17348 1.89115 1.52800 1.21488 0.95713 0.96393 1.04335 1.20987 0.99710 0.91941 0.95985 1.21145 0.93374 0.98834 1.09591 1.19231 0.90140 0.86383 0.96152 1.86016 1.35752 1.14078 1.85948 1.23273 0.95833 0.84157 0.97867 0.90684 1.21698 0.98544 0.93621 1.01357 1.22207 1.00899 0.96925 0.98381 1.22962 0.96720 0.90566 0.92855 1.87974 1.39187 1.23684 1.80466 1.23063 0.97772 0.87114 0.95763 1.20502 1.01256 0.88962 1.06663 1.21303 0.92441 0.98588 0.94729 0.90751 0.87545 0.83873 0.89962 0.89727 0.87248 0.91086 0.91658 0.86763 0.89473 0.91117 0.82476 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.46 11.76 21.89 0.26 -47.20 16 2 C 0.02 1.16 5.49 85.40 0.47 1.63 16 3 Si 1.00 39.27 29.57 68.60 2.03 41.30 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 7 C -0.54 -30.64 8.82 23.66 0.21 -30.43 16 8 H 0.10 4.84 6.07 -2.91 -0.02 4.83 16 9 C 0.36 21.90 6.90 25.61 0.18 22.08 16 10 O -0.60 -41.40 14.92 -4.73 -0.07 -41.47 16 11 C -0.18 -8.76 5.89 -19.99 -0.12 -8.88 16 12 C -0.07 -3.03 9.57 22.42 0.21 -2.82 16 13 C -0.21 -7.49 8.20 22.23 0.18 -7.31 16 14 C 0.13 4.12 6.61 22.71 0.15 4.27 16 15 O -0.30 -8.26 9.80 -89.80 -0.88 -9.14 16 16 C 0.05 1.00 2.31 30.68 0.07 1.07 16 17 H 0.08 1.79 6.35 -2.39 -0.02 1.78 16 18 C -0.11 -1.79 5.68 30.71 0.17 -1.62 16 19 C -0.15 -1.73 6.13 30.69 0.19 -1.54 16 20 C 0.04 0.60 6.85 72.02 0.49 1.10 16 21 O -0.39 -8.51 10.76 -148.98 -1.60 -10.11 16 22 C 0.04 0.89 6.11 72.02 0.44 1.33 16 23 C -0.16 -5.14 9.95 22.23 0.22 -4.92 16 24 C -0.05 -2.10 9.41 22.42 0.21 -1.89 16 25 H 0.28 15.10 8.29 -92.71 -0.77 14.33 16 26 H 0.11 5.09 7.65 -2.91 -0.02 5.07 16 27 H 0.14 4.37 5.35 -2.91 -0.02 4.35 16 28 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 2.18 6.81 -2.39 -0.02 2.16 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.14 5.40 6.22 -2.91 -0.02 5.38 16 Total: -1.00 -75.77 307.85 3.90 -71.87 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 1.09 Total: 22.68 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 3.08 Total: -27.93 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.26 Total: -47.20 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -2.55 Total: -60.72 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -75.77 3.90 -71.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.175 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds