Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.45720 * 2 1 4 4 C 1.54484 * 110.50872 * 122.75360 * 2 1 3 5 5 O 1.44429 * 104.80204 * 142.62625 * 4 2 1 6 6 C 1.44785 * 105.29344 * 319.44830 * 5 4 2 7 7 C 1.54481 * 104.62988 * 40.53606 * 6 5 4 8 8 H 1.08994 * 110.51586 * 217.27131 * 7 6 5 9 9 O 1.42908 * 110.50808 * 94.70164 * 7 6 5 10 10 C 1.35635 * 116.99987 * 89.06429 * 9 7 6 11 11 C 1.38668 * 120.16037 * 354.45525 * 10 9 7 12 12 C 1.38090 * 120.09139 * 179.97438 * 11 10 9 13 13 C 1.38680 * 120.41553 * 0.04935 * 12 11 10 14 14 C 1.37702 * 120.32481 * 359.97438 * 13 12 11 15 15 C 1.39844 * 119.89895 * 359.97438 * 14 13 12 16 16 C 1.47532 * 120.20411 * 180.02562 * 15 14 13 17 17 O 1.21808 * 120.00045 * 180.02562 * 16 15 14 18 18 C 1.41833 * 120.00368 * 359.97438 * 16 15 14 19 19 H 1.08005 * 119.99426 * 0.02562 * 18 16 15 20 20 C 1.40318 * 120.00291 * 180.02562 * 18 16 15 21 21 N 1.30537 * 119.99900 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00015 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46940 * 60.00354 * 22 20 18 24 24 H 1.48498 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47485 * 300.00179 * 22 20 18 26 26 H 1.09003 * 109.47394 * 182.60793 * 1 2 3 27 27 H 1.08996 * 109.47327 * 302.60637 * 1 2 3 28 28 H 1.08995 * 109.46958 * 62.60719 * 1 2 3 29 29 H 1.09003 * 110.37080 * 261.44887 * 4 2 1 30 30 H 1.08991 * 110.37632 * 23.67967 * 4 2 1 31 31 H 1.09001 * 110.42637 * 281.78211 * 6 5 4 32 32 H 1.09001 * 110.48594 * 159.33103 * 6 5 4 33 33 H 1.08000 * 119.95445 * 359.97438 * 11 10 9 34 34 H 1.08003 * 119.78913 * 180.02562 * 12 11 10 35 35 H 1.08006 * 119.83742 * 179.69972 * 13 12 11 36 36 H 1.08003 * 120.05102 * 179.97438 * 14 13 12 37 37 H 0.97000 * 119.99969 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0212 0.0000 4 6 2.0712 -0.7828 1.2169 5 8 3.2398 -1.4723 0.7220 6 6 2.8750 -1.9436 -0.5975 7 6 2.0713 -0.7799 -1.2191 8 1 1.2490 -1.1633 -1.8231 9 8 2.9242 0.0526 -2.0075 10 6 3.0733 -0.2803 -3.3139 11 6 2.5079 -1.4477 -3.8042 12 6 2.6602 -1.7850 -5.1346 13 6 3.3784 -0.9627 -5.9897 14 6 3.9474 0.2003 -5.5209 15 6 3.8007 0.5554 -4.1762 16 6 4.4071 1.8002 -3.6669 17 8 4.2774 2.1056 -2.4949 18 6 5.1420 2.6407 -4.5416 19 1 5.2574 2.3696 -5.5807 20 6 5.7192 3.8243 -4.0570 21 7 5.5802 4.1516 -2.8010 22 14 6.6865 4.9316 -5.2092 23 1 5.8045 5.3884 -6.3132 24 1 7.1887 6.1098 -4.4578 25 1 7.8347 4.1772 -5.7729 26 1 -0.3634 -1.0266 0.0468 27 1 -0.3634 0.5537 0.8657 28 1 -0.3633 0.4728 -0.9124 29 1 2.3464 -0.0965 2.0177 30 1 1.3278 -1.4976 1.5695 31 1 2.2544 -2.8367 -0.5243 32 1 3.7669 -2.1478 -1.1898 33 1 1.9478 -2.0940 -3.1447 34 1 2.2174 -2.6952 -5.5114 35 1 3.4957 -1.2380 -7.0274 36 1 4.5062 0.8373 -6.1906 37 1 5.9789 4.9700 -2.4661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = -95.955917 kcal Electronic energy + Delta-G solvation = -21570.347748 eV Core-core repulsion = 18278.161262 eV Total energy + Delta-G solvation = -3292.186486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19308 -38.66981 -36.52955 -35.94599 -33.24337 -32.57292 -30.61983 -29.45759 -28.63846 -26.63952 -26.11918 -23.13806 -22.92003 -21.44007 -20.22417 -19.51627 -17.67282 -16.62649 -16.20641 -15.97375 -15.47041 -15.28015 -14.54038 -14.49897 -14.02503 -13.81807 -13.33171 -13.27134 -13.13072 -12.68450 -12.42681 -12.14239 -11.84340 -11.63285 -11.39765 -11.34945 -11.17265 -10.93203 -10.87346 -10.83874 -10.42005 -10.38278 -10.19814 -10.06519 -9.59587 -8.90915 -8.21350 -7.43922 -7.32094 -6.19907 -4.80616 1.80205 2.05433 3.10898 3.16081 3.17907 3.67637 4.00723 4.05968 4.09565 4.53862 4.68710 4.86194 4.98382 5.03028 5.27326 5.29926 5.37202 5.43977 5.50541 5.57391 5.68684 5.70467 5.78978 5.90097 5.91995 5.95612 6.07019 6.17419 6.28052 6.39159 6.69067 6.79658 6.92893 6.95309 7.16806 7.32358 7.48461 8.09696 8.14217 8.87636 8.92820 10.41655 10.64952 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.005988 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.398465 B = 4674.525736 C = 5802.955492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 H 0.108 0.892 4 C 0.052 3.948 5 O -0.366 6.366 6 C 0.026 3.974 7 C 0.048 3.952 8 H 0.083 0.917 9 O -0.252 6.252 10 C 0.147 3.853 11 C -0.231 4.231 12 C -0.092 4.092 13 C -0.175 4.175 14 C -0.059 4.059 15 C -0.134 4.134 16 C 0.390 3.610 17 O -0.517 6.517 18 C -0.522 4.522 19 H 0.071 0.929 20 C 0.081 3.919 21 N -0.738 5.738 22 Si 0.904 3.096 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.265 1.265 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -9.855 0.871 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 H 0.126 0.874 4 C -0.025 4.025 5 O -0.285 6.285 6 C -0.051 4.051 7 C -0.010 4.010 8 H 0.101 0.899 9 O -0.164 6.164 10 C 0.100 3.900 11 C -0.250 4.250 12 C -0.111 4.111 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.136 4.136 16 C 0.283 3.717 17 O -0.404 6.404 18 C -0.554 4.554 19 H 0.089 0.911 20 C -0.142 4.142 21 N -0.367 5.367 22 Si 0.728 3.272 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.190 1.190 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.118 -9.483 1.852 12.620 hybrid contribution 0.126 0.194 -0.984 1.011 sum -7.992 -9.290 0.868 12.285 Atomic orbital electron populations 1.21779 0.93487 1.01742 1.02755 1.22615 0.96210 1.02727 0.92810 0.87377 1.23489 0.87893 0.94756 0.96399 1.89229 1.35115 1.73681 1.30426 1.24026 1.00564 0.95488 0.84986 1.23858 0.92798 0.91447 0.92862 0.89942 1.86594 1.62240 1.50159 1.17394 1.19454 0.94424 0.92445 0.83668 1.21069 1.07811 0.98712 0.97388 1.20800 0.98548 0.98840 0.92880 1.20955 1.02348 0.96636 0.99406 1.21421 0.96432 0.95281 0.94547 1.21580 1.00030 0.99515 0.92498 1.17986 0.81798 0.82807 0.89066 1.90554 1.58749 1.72806 1.18278 1.20865 1.31355 1.05575 0.97559 0.91061 1.25951 0.95280 0.97948 0.95010 1.69960 1.31997 1.20589 1.14106 0.86475 0.80376 0.79452 0.80869 1.19002 1.20349 1.18972 0.92626 0.91741 0.91872 0.88753 0.92319 0.91587 0.88317 0.86496 0.86893 0.86732 0.84735 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.96 37.16 0.33 -1.24 16 2 C -0.12 -1.86 3.53 -89.05 -0.31 -2.17 16 3 H 0.11 1.94 8.00 -51.93 -0.42 1.53 16 4 C 0.05 0.70 7.19 37.94 0.27 0.97 16 5 O -0.37 -6.27 11.66 -35.23 -0.41 -6.68 16 6 C 0.03 0.41 6.97 37.93 0.26 0.67 16 7 C 0.05 0.80 2.58 -25.16 -0.07 0.73 16 8 H 0.08 1.18 5.87 -51.93 -0.31 0.87 16 9 O -0.25 -5.71 7.86 -40.44 -0.32 -6.03 16 10 C 0.15 3.22 6.68 -38.61 -0.26 2.96 16 11 C -0.23 -4.02 8.85 -39.48 -0.35 -4.37 16 12 C -0.09 -1.47 10.03 -39.47 -0.40 -1.86 16 13 C -0.18 -2.95 10.02 -39.61 -0.40 -3.34 16 14 C -0.06 -1.19 9.43 -39.18 -0.37 -1.56 16 15 C -0.13 -3.27 5.90 -104.69 -0.62 -3.89 16 16 C 0.39 11.36 6.91 -34.42 -0.24 11.13 16 17 O -0.52 -16.83 13.71 -16.74 -0.23 -17.06 16 18 C -0.52 -14.61 8.86 -37.43 -0.33 -14.94 16 19 H 0.07 1.79 6.02 -52.48 -0.32 1.48 16 20 C 0.08 2.21 5.50 -17.32 -0.10 2.12 16 21 N -0.74 -21.67 11.73 55.56 0.65 -21.02 16 22 Si 0.90 19.59 29.56 -169.99 -5.03 14.57 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.63 8.09 -51.93 -0.42 1.21 16 33 H 0.12 1.68 5.85 -52.49 -0.31 1.37 16 34 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.13 2.62 6.20 -52.48 -0.33 2.29 16 37 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -34.67 310.19 -7.80 -42.47 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.59 Total: 3.88 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.56 Total: -14.80 kcal Atomic # 7 Polarization: -21.67 SS G_CDS: 0.65 Total: -21.02 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.96 Total: -29.77 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.67 -7.80 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.484 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds