Wall clock time and date at job start Mon Mar 30 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.45720 * 2 1 4 4 C 1.54484 * 110.50872 * 122.75360 * 2 1 3 5 5 O 1.44429 * 104.80204 * 142.62625 * 4 2 1 6 6 C 1.44785 * 105.29344 * 319.44830 * 5 4 2 7 7 C 1.54481 * 104.62988 * 40.53606 * 6 5 4 8 8 H 1.08994 * 110.51586 * 217.27131 * 7 6 5 9 9 O 1.42908 * 110.50808 * 94.70164 * 7 6 5 10 10 C 1.35635 * 116.99987 * 89.06429 * 9 7 6 11 11 C 1.38668 * 120.16037 * 354.45525 * 10 9 7 12 12 C 1.38090 * 120.09139 * 179.97438 * 11 10 9 13 13 C 1.38680 * 120.41553 * 0.04935 * 12 11 10 14 14 C 1.37702 * 120.32481 * 359.97438 * 13 12 11 15 15 C 1.39844 * 119.89895 * 359.97438 * 14 13 12 16 16 C 1.47532 * 120.20411 * 180.02562 * 15 14 13 17 17 O 1.21808 * 120.00045 * 180.02562 * 16 15 14 18 18 C 1.41833 * 120.00368 * 359.97438 * 16 15 14 19 19 H 1.08005 * 119.99426 * 0.02562 * 18 16 15 20 20 C 1.40318 * 120.00291 * 180.02562 * 18 16 15 21 21 N 1.30537 * 119.99900 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00015 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46940 * 60.00354 * 22 20 18 24 24 H 1.48498 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47485 * 300.00179 * 22 20 18 26 26 H 1.09003 * 109.47394 * 182.60793 * 1 2 3 27 27 H 1.08996 * 109.47327 * 302.60637 * 1 2 3 28 28 H 1.08995 * 109.46958 * 62.60719 * 1 2 3 29 29 H 1.09003 * 110.37080 * 261.44887 * 4 2 1 30 30 H 1.08991 * 110.37632 * 23.67967 * 4 2 1 31 31 H 1.09001 * 110.42637 * 281.78211 * 6 5 4 32 32 H 1.09001 * 110.48594 * 159.33103 * 6 5 4 33 33 H 1.08000 * 119.95445 * 359.97438 * 11 10 9 34 34 H 1.08003 * 119.78913 * 180.02562 * 12 11 10 35 35 H 1.08006 * 119.83742 * 179.69972 * 13 12 11 36 36 H 1.08003 * 120.05102 * 179.97438 * 14 13 12 37 37 H 0.97000 * 119.99969 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0212 0.0000 4 6 2.0712 -0.7828 1.2169 5 8 3.2398 -1.4723 0.7220 6 6 2.8750 -1.9436 -0.5975 7 6 2.0713 -0.7799 -1.2191 8 1 1.2490 -1.1633 -1.8231 9 8 2.9242 0.0526 -2.0075 10 6 3.0733 -0.2803 -3.3139 11 6 2.5079 -1.4477 -3.8042 12 6 2.6602 -1.7850 -5.1346 13 6 3.3784 -0.9627 -5.9897 14 6 3.9474 0.2003 -5.5209 15 6 3.8007 0.5554 -4.1762 16 6 4.4071 1.8002 -3.6669 17 8 4.2774 2.1056 -2.4949 18 6 5.1420 2.6407 -4.5416 19 1 5.2574 2.3696 -5.5807 20 6 5.7192 3.8243 -4.0570 21 7 5.5802 4.1516 -2.8010 22 14 6.6865 4.9316 -5.2092 23 1 5.8045 5.3884 -6.3132 24 1 7.1887 6.1098 -4.4578 25 1 7.8347 4.1772 -5.7729 26 1 -0.3634 -1.0266 0.0468 27 1 -0.3634 0.5537 0.8657 28 1 -0.3633 0.4728 -0.9124 29 1 2.3464 -0.0965 2.0177 30 1 1.3278 -1.4976 1.5695 31 1 2.2544 -2.8367 -0.5243 32 1 3.7669 -2.1478 -1.1898 33 1 1.9478 -2.0940 -3.1447 34 1 2.2174 -2.6952 -5.5114 35 1 3.4957 -1.2380 -7.0274 36 1 4.5062 0.8373 -6.1906 37 1 5.9789 4.9700 -2.4661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:47 Heat of formation + Delta-G solvation = -119.280518 kcal Electronic energy + Delta-G solvation = -21571.359178 eV Core-core repulsion = 18278.161262 eV Total energy + Delta-G solvation = -3293.197917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56242 -40.07527 -38.30339 -37.67591 -34.73411 -34.36754 -32.22969 -30.82965 -30.00019 -28.64838 -27.14590 -24.59063 -24.41568 -22.83185 -21.67823 -21.10776 -19.12675 -18.49087 -17.69121 -17.23670 -17.14493 -16.63627 -16.08775 -15.88924 -15.46453 -15.26594 -14.97288 -14.71299 -14.38289 -14.17402 -13.96562 -13.64665 -13.26864 -13.17791 -12.88038 -12.79593 -12.64640 -12.59196 -12.29288 -12.10336 -11.99267 -11.92901 -11.65256 -11.54476 -10.96293 -10.77196 -9.73927 -9.47041 -8.97671 -8.27609 -7.01954 0.26299 0.59797 1.35746 1.39886 1.51618 2.21277 2.29007 2.34542 2.85574 2.92738 3.36076 3.69218 3.79465 3.82922 3.94648 4.00340 4.07132 4.22104 4.29794 4.34958 4.42296 4.56374 4.57879 4.64284 4.66661 4.74366 4.87455 4.92702 5.12741 5.16675 5.21530 5.23016 5.40869 5.53941 5.68849 5.72535 5.96045 6.07715 6.66556 6.73784 6.90975 8.34027 8.56139 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.005988 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.398465 B = 4674.525736 C = 5802.955492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 H 0.057 0.943 4 C 0.053 3.947 5 O -0.402 6.402 6 C 0.030 3.970 7 C 0.036 3.964 8 H 0.110 0.890 9 O -0.301 6.301 10 C 0.127 3.873 11 C -0.224 4.224 12 C -0.070 4.070 13 C -0.168 4.168 14 C -0.064 4.064 15 C -0.196 4.196 16 C 0.364 3.636 17 O -0.575 6.575 18 C -0.553 4.553 19 H 0.092 0.908 20 C 0.022 3.978 21 N -0.794 5.794 22 Si 0.995 3.005 23 H -0.250 1.250 24 H -0.271 1.271 25 H -0.251 1.251 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -12.599 -1.274 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.148 4.148 3 H 0.075 0.925 4 C -0.024 4.024 5 O -0.321 6.321 6 C -0.047 4.047 7 C -0.020 4.020 8 H 0.128 0.872 9 O -0.214 6.214 10 C 0.080 3.920 11 C -0.242 4.242 12 C -0.087 4.087 13 C -0.186 4.186 14 C -0.082 4.082 15 C -0.198 4.198 16 C 0.262 3.738 17 O -0.467 6.467 18 C -0.583 4.583 19 H 0.110 0.890 20 C -0.196 4.196 21 N -0.423 5.423 22 Si 0.814 3.186 23 H -0.174 1.174 24 H -0.195 1.195 25 H -0.175 1.175 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.175 0.825 36 H 0.150 0.850 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.670 -12.252 -0.315 15.611 hybrid contribution 0.531 0.926 -0.304 1.110 sum -9.139 -11.325 -0.619 14.566 Atomic orbital electron populations 1.21751 0.90209 1.03948 1.02934 1.22666 0.98864 0.99963 0.93275 0.92482 1.23690 0.87736 0.95394 0.95538 1.89179 1.37374 1.74283 1.31306 1.24128 1.00232 0.96448 0.83877 1.24297 0.93064 0.91676 0.92999 0.87199 1.86542 1.63827 1.52652 1.18400 1.19721 0.94950 0.93810 0.83475 1.21438 1.06872 0.97073 0.98866 1.21455 0.95982 0.99637 0.91652 1.21385 1.00797 0.94770 1.01603 1.21490 0.96949 0.96965 0.92821 1.21257 1.03993 0.99420 0.95087 1.18774 0.81551 0.84843 0.88596 1.90488 1.60989 1.74863 1.20349 1.21408 1.31864 1.06457 0.98613 0.88969 1.27278 0.95947 0.99531 0.96865 1.70141 1.33577 1.21616 1.17011 0.85112 0.78673 0.76755 0.78100 1.17358 1.19534 1.17491 0.89362 0.90263 0.92979 0.88834 0.88016 0.86771 0.90495 0.83009 0.81539 0.82506 0.84989 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.96 71.98 0.65 -2.09 16 2 C -0.13 -3.94 3.53 -9.78 -0.03 -3.97 16 3 H 0.06 2.30 8.00 -2.39 -0.02 2.28 16 4 C 0.05 1.39 7.19 72.49 0.52 1.91 16 5 O -0.40 -13.87 11.66 -148.98 -1.74 -15.61 16 6 C 0.03 0.88 6.97 72.49 0.51 1.39 16 7 C 0.04 1.20 2.58 31.61 0.08 1.28 16 8 H 0.11 2.90 5.87 -2.39 -0.01 2.89 16 9 O -0.30 -14.55 7.86 -68.61 -0.54 -15.09 16 10 C 0.13 5.73 6.68 22.90 0.15 5.88 16 11 C -0.22 -7.22 8.85 22.34 0.20 -7.03 16 12 C -0.07 -1.87 10.03 22.34 0.22 -1.64 16 13 C -0.17 -5.05 10.02 22.25 0.22 -4.82 16 14 C -0.06 -2.61 9.43 22.53 0.21 -2.40 16 15 C -0.20 -10.02 5.90 -19.91 -0.12 -10.14 16 16 C 0.36 22.97 6.91 25.61 0.18 23.15 16 17 O -0.57 -41.10 13.71 16.18 0.22 -40.88 16 18 C -0.55 -32.68 8.86 23.67 0.21 -32.47 16 19 H 0.09 4.82 6.02 -2.91 -0.02 4.80 16 20 C 0.02 1.23 5.50 85.39 0.47 1.70 16 21 N -0.79 -49.82 11.73 21.88 0.26 -49.57 16 22 Si 1.00 41.26 29.56 68.60 2.03 43.29 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 26 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.10 1.83 7.82 -2.39 -0.02 1.81 16 31 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 33 H 0.15 3.72 5.85 -2.91 -0.02 3.70 16 34 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.13 5.21 6.20 -2.91 -0.02 5.19 16 37 H 0.28 15.72 8.29 -92.71 -0.77 14.95 16 Total: -1.00 -87.11 310.19 4.78 -82.33 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.08 Total: 24.76 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.47 Total: -29.24 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.26 Total: -49.57 kcal Atomic # 8 Polarization: -69.52 SS G_CDS: -2.05 Total: -71.57 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -87.11 4.78 -82.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.948 kcal (2) G-P(sol) polarization free energy of solvation -87.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds