Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30541 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47418 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47119 * 300.00163 * 3 2 1 6 6 H 1.48501 * 109.47290 * 60.00197 * 3 2 1 7 7 C 1.40323 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.41831 * 119.99571 * 359.97438 * 7 2 1 10 10 O 1.21804 * 120.00143 * 0.02562 * 9 7 2 11 11 C 1.47539 * 119.99655 * 179.97438 * 9 7 2 12 12 C 1.39841 * 120.20356 * 359.97438 * 11 9 7 13 13 C 1.37711 * 119.89623 * 180.02562 * 12 11 9 14 14 C 1.38684 * 120.32213 * 0.02562 * 13 12 11 15 15 C 1.38089 * 120.41843 * 359.70305 * 14 13 12 16 16 C 1.38672 * 120.09181 * 0.55269 * 15 14 13 17 17 O 1.35626 * 120.16219 * 179.75219 * 16 15 14 18 18 C 1.42901 * 117.00310 * 359.72128 * 17 16 15 19 19 C 1.52998 * 109.47412 * 180.02562 * 18 17 16 20 20 H 1.08998 * 110.67785 * 52.02979 * 19 18 17 21 21 C 1.54991 * 110.61844 * 175.00149 * 19 18 17 22 22 C 1.54817 * 102.09285 * 155.52077 * 21 19 18 23 23 C 1.54096 * 104.18822 * 339.11830 * 22 21 19 24 24 O 1.43749 * 107.29556 * 357.96748 * 23 22 21 25 25 H 0.96998 * 120.00060 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.05370 * 359.97438 * 12 11 9 27 27 H 1.07998 * 119.83562 * 179.97438 * 13 12 11 28 28 H 1.07998 * 119.78920 * 179.97438 * 14 13 12 29 29 H 1.07993 * 119.95716 * 180.30067 * 15 14 13 30 30 H 1.08996 * 109.47237 * 59.99687 * 18 17 16 31 31 H 1.09004 * 109.46663 * 299.99918 * 18 17 16 32 32 H 1.08996 * 110.90945 * 37.32016 * 21 19 18 33 33 H 1.09004 * 110.90588 * 273.71282 * 21 19 18 34 34 H 1.09004 * 110.48829 * 97.79579 * 22 21 19 35 35 H 1.08996 * 110.48865 * 220.43897 * 22 21 19 36 36 H 1.08997 * 109.88493 * 117.39400 * 23 22 21 37 37 H 1.09004 * 109.87903 * 238.55227 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.6994 1.3465 0.0006 5 1 1.8806 2.3965 -1.2125 6 1 1.8807 2.3965 1.2125 7 6 2.0071 -1.2152 0.0005 8 1 3.0871 -1.2152 0.0001 9 6 1.2979 -2.4435 0.0016 10 8 0.0799 -2.4435 0.0016 11 6 2.0357 -3.7212 0.0016 12 6 3.4341 -3.7261 0.0000 13 6 4.1162 -4.9223 -0.0005 14 6 3.4232 -6.1236 0.0000 15 6 2.0424 -6.1341 0.0073 16 6 1.3379 -4.9396 0.0025 17 8 -0.0183 -4.9483 0.0045 18 6 -0.6590 -6.2257 0.0055 19 6 -2.1770 -6.0349 0.0071 20 1 -2.4815 -5.3645 -0.7966 21 6 -2.8988 -7.4007 -0.1182 22 6 -4.2752 -7.1003 0.5239 23 6 -4.0214 -5.8554 1.3959 24 8 -2.6249 -5.5332 1.2848 25 1 -0.4850 0.8400 0.0004 26 1 3.9782 -2.7933 -0.0017 27 1 5.1962 -4.9250 -0.0022 28 1 3.9669 -7.0567 -0.0008 29 1 1.5102 -7.0738 0.0125 30 1 -0.3612 -6.7808 0.8949 31 1 -0.3638 -6.7807 -0.8850 32 1 -2.3696 -8.1731 0.4397 33 1 -3.0117 -7.6865 -1.1641 34 1 -5.0158 -6.8826 -0.2456 35 1 -4.5995 -7.9384 1.1406 36 1 -4.6239 -5.0215 1.0358 37 1 -4.2698 -6.0735 2.4346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -98.083021 kcal Electronic energy + Delta-G solvation = -21126.823268 eV Core-core repulsion = 17834.544544 eV Total energy + Delta-G solvation = -3292.278724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72276 -38.95246 -36.76889 -35.89690 -32.54516 -32.11815 -30.92664 -30.45051 -28.87555 -26.68135 -25.51884 -22.87137 -22.03698 -21.28234 -20.82245 -19.57011 -17.47364 -16.68380 -16.40740 -15.91492 -15.50314 -15.35942 -14.78740 -14.44885 -14.34015 -13.70505 -13.55053 -13.21463 -13.04103 -12.47872 -12.39205 -11.81069 -11.72169 -11.49807 -11.35008 -11.32028 -11.24733 -10.98914 -10.84365 -10.76002 -10.43489 -10.40407 -10.20841 -9.99418 -9.45814 -8.87967 -8.15071 -7.37184 -7.25921 -6.14905 -4.75315 1.86773 2.13486 3.10723 3.19346 3.23771 3.70318 3.95583 4.09652 4.15447 4.50324 4.73872 4.78302 4.90389 5.17208 5.23048 5.28606 5.42394 5.43820 5.50043 5.55296 5.62498 5.71295 5.75245 5.84960 5.95592 5.96230 5.98950 6.10423 6.24705 6.40274 6.75524 6.97928 7.00129 7.07654 7.22545 7.37304 7.54665 8.15613 8.19959 8.92693 8.98491 10.46702 10.70798 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.005651 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.667231 B = 4953.598830 C = 6596.362821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.081 3.919 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.390 3.610 10 O -0.513 6.513 11 C -0.136 4.136 12 C -0.059 4.059 13 C -0.177 4.177 14 C -0.093 4.093 15 C -0.230 4.230 16 C 0.150 3.850 17 O -0.262 6.262 18 C 0.061 3.939 19 C 0.083 3.917 20 H 0.084 0.916 21 C -0.147 4.147 22 C -0.154 4.154 23 C 0.043 3.957 24 O -0.358 6.358 25 H 0.271 0.729 26 H 0.135 0.865 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -13.301 -0.501 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.090 0.910 9 C 0.283 3.717 10 O -0.400 6.400 11 C -0.138 4.138 12 C -0.077 4.077 13 C -0.195 4.195 14 C -0.111 4.111 15 C -0.249 4.249 16 C 0.104 3.896 17 O -0.173 6.173 18 C -0.015 4.015 19 C 0.025 3.975 20 H 0.102 0.898 21 C -0.185 4.185 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.276 6.276 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.881 -12.979 -0.341 13.299 hybrid contribution 0.562 0.302 -0.128 0.651 sum -2.319 -12.677 -0.469 12.896 Atomic orbital electron populations 1.69990 1.07423 1.27652 1.31648 1.25956 0.94581 1.00766 0.92872 0.86377 0.80828 0.81649 0.78393 1.18453 1.19979 1.19963 1.20927 0.94751 0.91613 1.48114 0.90982 1.18012 0.88682 0.85342 0.79680 1.90566 1.14506 1.88056 1.46899 1.21578 0.93864 0.95708 1.02610 1.21404 0.93010 0.97992 0.95276 1.20942 0.99237 0.92688 1.06646 1.20791 0.93286 0.97559 0.99503 1.21065 0.95414 0.96384 1.12068 1.19430 0.82489 0.93453 0.94264 1.86510 1.15891 1.27721 1.87165 1.22730 0.91339 0.86365 1.01099 1.23090 0.92540 0.93817 0.88051 0.89840 1.23107 0.95847 0.97575 1.01990 1.22927 0.97608 0.98864 0.99769 1.23145 0.84102 0.95877 1.00274 1.89071 1.22917 1.80024 1.35628 0.91776 0.84766 0.86792 0.86954 0.86525 0.91912 0.91404 0.90342 0.89881 0.90598 0.90542 0.92242 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -22.02 11.73 55.57 0.65 -21.37 16 2 C 0.08 2.24 5.50 -17.32 -0.10 2.15 16 3 Si 0.90 19.86 29.56 -169.99 -5.03 14.84 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.52 -14.89 8.86 -37.42 -0.33 -15.22 16 8 H 0.07 1.85 6.02 -52.49 -0.32 1.54 16 9 C 0.39 11.62 6.91 -34.42 -0.24 11.38 16 10 O -0.51 -17.13 13.71 -16.74 -0.23 -17.36 16 11 C -0.14 -3.40 5.90 -104.69 -0.62 -4.02 16 12 C -0.06 -1.23 9.43 -39.17 -0.37 -1.60 16 13 C -0.18 -3.08 10.02 -39.61 -0.40 -3.48 16 14 C -0.09 -1.54 10.03 -39.47 -0.40 -1.94 16 15 C -0.23 -4.20 9.03 -39.48 -0.36 -4.56 16 16 C 0.15 3.44 6.71 -38.60 -0.26 3.18 16 17 O -0.26 -6.18 8.22 -41.24 -0.34 -6.52 16 18 C 0.06 1.04 4.48 37.16 0.17 1.20 16 19 C 0.08 1.32 3.63 -25.68 -0.09 1.23 16 20 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 21 C -0.15 -1.60 6.59 -24.72 -0.16 -1.77 16 22 C -0.15 -1.54 7.01 -25.20 -0.18 -1.72 16 23 C 0.04 0.57 7.70 37.73 0.29 0.86 16 24 O -0.36 -6.62 11.22 -35.23 -0.40 -7.01 16 25 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 26 H 0.13 2.69 6.20 -52.49 -0.33 2.36 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.76 6.30 -52.49 -0.33 1.43 16 30 H 0.06 0.99 7.65 -51.93 -0.40 0.60 16 31 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 32 H 0.08 0.77 8.06 -51.93 -0.42 0.36 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -36.14 312.74 -8.36 -44.50 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.70 Total: 2.50 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -3.04 Total: -14.29 kcal Atomic # 7 Polarization: -22.02 SS G_CDS: 0.65 Total: -21.37 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.96 Total: -30.89 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.14 -8.36 -44.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.580 kcal (2) G-P(sol) polarization free energy of solvation -36.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds