Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30541 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47418 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47119 * 300.00163 * 3 2 1 6 6 H 1.48501 * 109.47290 * 60.00197 * 3 2 1 7 7 C 1.40323 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.41831 * 119.99571 * 359.97438 * 7 2 1 10 10 O 1.21804 * 120.00143 * 0.02562 * 9 7 2 11 11 C 1.47539 * 119.99655 * 179.97438 * 9 7 2 12 12 C 1.39841 * 120.20356 * 359.97438 * 11 9 7 13 13 C 1.37711 * 119.89623 * 180.02562 * 12 11 9 14 14 C 1.38684 * 120.32213 * 0.02562 * 13 12 11 15 15 C 1.38089 * 120.41843 * 359.70305 * 14 13 12 16 16 C 1.38672 * 120.09181 * 0.55269 * 15 14 13 17 17 O 1.35626 * 120.16219 * 179.75219 * 16 15 14 18 18 C 1.42901 * 117.00310 * 359.72128 * 17 16 15 19 19 C 1.52998 * 109.47412 * 180.02562 * 18 17 16 20 20 H 1.08998 * 110.67785 * 52.02979 * 19 18 17 21 21 C 1.54991 * 110.61844 * 175.00149 * 19 18 17 22 22 C 1.54817 * 102.09285 * 155.52077 * 21 19 18 23 23 C 1.54096 * 104.18822 * 339.11830 * 22 21 19 24 24 O 1.43749 * 107.29556 * 357.96748 * 23 22 21 25 25 H 0.96998 * 120.00060 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.05370 * 359.97438 * 12 11 9 27 27 H 1.07998 * 119.83562 * 179.97438 * 13 12 11 28 28 H 1.07998 * 119.78920 * 179.97438 * 14 13 12 29 29 H 1.07993 * 119.95716 * 180.30067 * 15 14 13 30 30 H 1.08996 * 109.47237 * 59.99687 * 18 17 16 31 31 H 1.09004 * 109.46663 * 299.99918 * 18 17 16 32 32 H 1.08996 * 110.90945 * 37.32016 * 21 19 18 33 33 H 1.09004 * 110.90588 * 273.71282 * 21 19 18 34 34 H 1.09004 * 110.48829 * 97.79579 * 22 21 19 35 35 H 1.08996 * 110.48865 * 220.43897 * 22 21 19 36 36 H 1.08997 * 109.88493 * 117.39400 * 23 22 21 37 37 H 1.09004 * 109.87903 * 238.55227 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.6994 1.3465 0.0006 5 1 1.8806 2.3965 -1.2125 6 1 1.8807 2.3965 1.2125 7 6 2.0071 -1.2152 0.0005 8 1 3.0871 -1.2152 0.0001 9 6 1.2979 -2.4435 0.0016 10 8 0.0799 -2.4435 0.0016 11 6 2.0357 -3.7212 0.0016 12 6 3.4341 -3.7261 0.0000 13 6 4.1162 -4.9223 -0.0005 14 6 3.4232 -6.1236 0.0000 15 6 2.0424 -6.1341 0.0073 16 6 1.3379 -4.9396 0.0025 17 8 -0.0183 -4.9483 0.0045 18 6 -0.6590 -6.2257 0.0055 19 6 -2.1770 -6.0349 0.0071 20 1 -2.4815 -5.3645 -0.7966 21 6 -2.8988 -7.4007 -0.1182 22 6 -4.2752 -7.1003 0.5239 23 6 -4.0214 -5.8554 1.3959 24 8 -2.6249 -5.5332 1.2848 25 1 -0.4850 0.8400 0.0004 26 1 3.9782 -2.7933 -0.0017 27 1 5.1962 -4.9250 -0.0022 28 1 3.9669 -7.0567 -0.0008 29 1 1.5102 -7.0738 0.0125 30 1 -0.3612 -6.7808 0.8949 31 1 -0.3638 -6.7807 -0.8850 32 1 -2.3696 -8.1731 0.4397 33 1 -3.0117 -7.6865 -1.1641 34 1 -5.0158 -6.8826 -0.2456 35 1 -4.5995 -7.9384 1.1406 36 1 -4.6239 -5.0215 1.0358 37 1 -4.2698 -6.0735 2.4346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = -122.590320 kcal Electronic energy + Delta-G solvation = -21127.885985 eV Core-core repulsion = 17834.544544 eV Total energy + Delta-G solvation = -3293.341440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17224 -40.25116 -38.53690 -37.77178 -34.71396 -33.21444 -32.28198 -31.96560 -30.36133 -28.72885 -26.74581 -24.57013 -23.38369 -22.33239 -22.18671 -21.38763 -19.00819 -18.45777 -17.84449 -17.33095 -17.15537 -16.66088 -16.21489 -16.05832 -15.73420 -15.24997 -14.95578 -14.70858 -14.51144 -14.21577 -14.02899 -13.25396 -13.19555 -13.07371 -12.73490 -12.70188 -12.68730 -12.36599 -12.33542 -12.04573 -11.99269 -11.81462 -11.78631 -11.56294 -10.98087 -10.69937 -9.72694 -9.44981 -8.97356 -8.26291 -7.00564 0.27631 0.62111 1.36481 1.37406 1.55830 2.22288 2.30595 2.34962 2.85114 2.93200 3.55300 3.73866 3.81437 3.90792 3.98075 4.02163 4.05803 4.17104 4.28274 4.34741 4.40884 4.46261 4.57633 4.64913 4.76827 4.82676 4.85679 4.89348 5.02722 5.17447 5.18354 5.24407 5.42390 5.55315 5.72180 5.93971 5.97968 6.09078 6.66000 6.75165 6.92224 8.35863 8.57980 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.005651 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.667231 B = 4953.598830 C = 6596.362821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.021 3.979 3 Si 0.997 3.003 4 H -0.241 1.241 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.364 3.636 10 O -0.573 6.573 11 C -0.197 4.197 12 C -0.063 4.063 13 C -0.168 4.168 14 C -0.070 4.070 15 C -0.224 4.224 16 C 0.127 3.873 17 O -0.312 6.312 18 C 0.054 3.946 19 C 0.071 3.929 20 H 0.053 0.947 21 C -0.132 4.132 22 C -0.144 4.144 23 C 0.029 3.971 24 O -0.407 6.407 25 H 0.279 0.721 26 H 0.133 0.867 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.152 0.848 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -15.872 -0.710 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.197 4.197 3 Si 0.815 3.185 4 H -0.164 1.164 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.111 0.889 9 C 0.261 3.739 10 O -0.465 6.465 11 C -0.199 4.199 12 C -0.081 4.081 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.243 4.243 16 C 0.080 3.920 17 O -0.225 6.225 18 C -0.021 4.021 19 C 0.013 3.987 20 H 0.072 0.928 21 C -0.169 4.169 22 C -0.181 4.181 23 C -0.047 4.047 24 O -0.327 6.327 25 H 0.089 0.911 26 H 0.151 0.849 27 H 0.176 0.824 28 H 0.184 0.816 29 H 0.170 0.830 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.426 -15.581 -0.553 15.596 hybrid contribution -0.182 0.978 -0.045 0.996 sum -0.608 -14.602 -0.599 14.627 Atomic orbital electron populations 1.70166 1.10072 1.29408 1.32829 1.27300 0.95476 1.05635 0.91266 0.84998 0.79724 0.74960 0.78824 1.16404 1.18905 1.19082 1.21459 0.95953 0.92311 1.48552 0.88903 1.18810 0.88502 0.88208 0.78366 1.90499 1.16779 1.89556 1.49667 1.21279 0.95688 0.94733 1.08183 1.21478 0.91373 0.99925 0.95359 1.21387 1.01318 0.91380 1.04528 1.21452 0.92598 0.99379 0.95389 1.21455 0.96470 0.95811 1.10556 1.19734 0.82672 0.94485 0.95103 1.86455 1.16927 1.31651 1.87471 1.23109 0.91513 0.84574 1.02889 1.23284 0.92647 0.96357 0.86394 0.92848 1.23098 0.95373 0.94474 1.03960 1.22930 0.97548 0.97830 0.99798 1.23421 0.81782 0.97435 1.02085 1.89019 1.25666 1.81221 1.36821 0.91122 0.84929 0.82435 0.81556 0.83024 0.90748 0.88343 0.88545 0.87445 0.89220 0.87718 0.93334 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -50.55 11.73 21.88 0.26 -50.30 16 2 C 0.02 1.20 5.50 85.39 0.47 1.67 16 3 Si 1.00 41.77 29.56 68.60 2.03 43.80 16 4 H -0.24 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.55 -33.13 8.86 23.67 0.21 -32.92 16 8 H 0.09 4.94 6.02 -2.91 -0.02 4.92 16 9 C 0.36 23.37 6.91 25.61 0.18 23.55 16 10 O -0.57 -41.85 13.71 16.19 0.22 -41.63 16 11 C -0.20 -10.37 5.90 -19.91 -0.12 -10.49 16 12 C -0.06 -2.64 9.43 22.53 0.21 -2.43 16 13 C -0.17 -5.24 10.02 22.25 0.22 -5.02 16 14 C -0.07 -1.99 10.03 22.34 0.22 -1.76 16 15 C -0.22 -7.62 9.03 22.34 0.20 -7.42 16 16 C 0.13 5.96 6.71 22.90 0.15 6.11 16 17 O -0.31 -15.73 8.22 -67.72 -0.56 -16.29 16 18 C 0.05 1.87 4.48 71.98 0.32 2.19 16 19 C 0.07 2.36 3.63 31.27 0.11 2.47 16 20 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 21 C -0.13 -2.61 6.59 31.90 0.21 -2.40 16 22 C -0.14 -2.62 7.01 31.59 0.22 -2.40 16 23 C 0.03 0.80 7.70 72.35 0.56 1.36 16 24 O -0.41 -16.09 11.22 -148.98 -1.67 -17.76 16 25 H 0.28 15.81 8.29 -92.71 -0.77 15.04 16 26 H 0.13 5.36 6.20 -2.92 -0.02 5.34 16 27 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.15 3.97 6.30 -2.91 -0.02 3.95 16 30 H 0.07 2.32 7.65 -2.39 -0.02 2.30 16 31 H 0.10 2.67 7.67 -2.38 -0.02 2.65 16 32 H 0.10 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -90.38 312.74 4.54 -85.85 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.08 Total: 23.81 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.18 Total: -27.49 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.26 Total: -50.30 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: -2.01 Total: -75.67 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -90.38 4.54 -85.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.744 kcal (2) G-P(sol) polarization free energy of solvation -90.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds