Wall clock time and date at job start Mon Mar 30 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86809 * 119.99415 * 2 1 4 4 H 1.48495 * 109.46814 * 240.00320 * 3 2 1 5 5 H 1.48497 * 109.47251 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46877 * 120.00274 * 3 2 1 7 7 C 1.40341 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.41754 * 119.99826 * 359.97438 * 7 2 1 10 10 O 1.21819 * 120.00392 * 359.97438 * 9 7 2 11 11 C 1.47577 * 119.99947 * 180.02562 * 9 7 2 12 12 C 1.39946 * 120.09180 * 180.02562 * 11 9 7 13 13 C 1.37119 * 119.90296 * 180.02562 * 12 11 9 14 14 C 1.39166 * 120.09626 * 359.97438 * 13 12 11 15 15 O 1.35653 * 119.90953 * 179.97438 * 14 13 12 16 16 C 1.42907 * 117.00309 * 185.36252 * 15 14 13 17 17 H 1.08998 * 109.51737 * 35.32846 * 16 15 14 18 18 C 1.53180 * 109.52190 * 155.45411 * 16 15 14 19 19 C 1.53180 * 109.10691 * 176.83928 * 18 16 15 20 20 C 1.53101 * 109.15746 * 303.15784 * 19 18 16 21 21 O 1.42899 * 109.49054 * 57.47140 * 20 19 18 22 22 C 1.42900 * 114.09754 * 298.88712 * 21 20 19 23 23 C 1.39161 * 120.18620 * 0.26159 * 14 13 12 24 24 C 1.37125 * 120.09625 * 359.48368 * 23 14 13 25 25 H 0.96995 * 120.00868 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05139 * 359.97438 * 12 11 9 27 27 H 1.08006 * 119.95657 * 179.97438 * 13 12 11 28 28 H 1.08996 * 109.54503 * 296.75218 * 18 16 15 29 29 H 1.09000 * 109.54408 * 56.93104 * 18 16 15 30 30 H 1.09001 * 109.52088 * 62.96981 * 19 18 16 31 31 H 1.08994 * 109.52109 * 183.15418 * 19 18 16 32 32 H 1.09000 * 109.40354 * 297.48953 * 20 19 18 33 33 H 1.09003 * 109.49096 * 177.51171 * 20 19 18 34 34 H 1.09000 * 109.48210 * 301.17683 * 22 21 20 35 35 H 1.09001 * 109.48051 * 181.14292 * 22 21 20 36 36 H 1.07997 * 119.95522 * 179.71922 * 23 14 13 37 37 H 1.07996 * 120.05448 * 180.25748 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6179 0.0000 4 1 3.0928 1.6966 -1.2125 5 1 1.2741 2.7465 0.0006 6 1 3.0930 1.6966 1.2125 7 6 2.0071 -1.2153 -0.0005 8 1 3.0872 -1.2152 -0.0010 9 6 1.2984 -2.4430 -0.0005 10 8 0.0803 -2.4432 0.0004 11 6 2.0364 -3.7210 -0.0005 12 6 1.3387 -4.9341 -0.0011 13 6 2.0283 -6.1193 -0.0006 14 6 3.4200 -6.1170 0.0000 15 8 4.0984 -7.2917 0.0010 16 6 5.5206 -7.2195 0.1205 17 1 5.7893 -6.3923 0.7775 18 6 6.0523 -8.5315 0.7057 19 6 7.5822 -8.4744 0.7560 20 6 8.1214 -8.2027 -0.6509 21 8 7.5639 -6.9845 -1.1481 22 6 6.1395 -6.9985 -1.2621 23 6 4.1177 -4.9129 0.0055 24 6 3.4359 -3.7231 -0.0003 25 1 -0.4851 0.8399 0.0004 26 1 0.2588 -4.9369 -0.0011 27 1 1.4907 -7.0561 -0.0006 28 1 5.6591 -8.6673 1.7131 29 1 5.7391 -9.3647 0.0766 30 1 7.8950 -7.6731 1.4256 31 1 7.9705 -9.4260 1.1190 32 1 7.8440 -9.0252 -1.3101 33 1 9.2075 -8.1170 -0.6139 34 1 5.8362 -7.8053 -1.9294 35 1 5.7977 -6.0453 -1.6653 36 1 5.1976 -4.9154 0.0105 37 1 3.9781 -2.7891 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233526363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:22 Heat of formation + Delta-G solvation = -106.712354 kcal Electronic energy + Delta-G solvation = -20730.641736 eV Core-core repulsion = 17437.988816 eV Total energy + Delta-G solvation = -3292.652920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41866 -38.86705 -37.40399 -35.71031 -33.54616 -32.69190 -31.19716 -30.19083 -29.32223 -26.63868 -25.38395 -24.01394 -22.41640 -22.05341 -20.45078 -19.53718 -18.00671 -16.76552 -16.64866 -16.48395 -15.61103 -15.37979 -15.32680 -14.30511 -14.23160 -14.08983 -13.80326 -13.28279 -13.11161 -12.93406 -12.71453 -12.62025 -12.31125 -11.76104 -11.65989 -11.46975 -11.28628 -11.17241 -11.11029 -10.78815 -10.57466 -10.46431 -10.36772 -9.93451 -9.67643 -8.97503 -8.46849 -7.49154 -7.48119 -6.31156 -4.91649 1.81518 2.00492 3.06430 3.11813 3.11946 3.13900 3.74093 3.99891 4.01486 4.41588 4.49677 4.54729 4.65331 4.67882 4.86068 5.04856 5.24757 5.29078 5.36690 5.41407 5.45212 5.52692 5.61215 5.79387 5.80666 5.82597 5.92609 6.08881 6.13137 6.29407 6.62486 6.82319 6.85074 7.04076 7.23759 7.33861 7.37087 7.80961 8.01966 8.78065 8.83316 10.30463 10.52463 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.003823 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.598167 B = 7321.915909 C = 8119.123913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.080 3.920 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.389 3.611 10 O -0.544 6.544 11 C -0.135 4.135 12 C -0.057 4.057 13 C -0.161 4.161 14 C 0.107 3.893 15 O -0.309 6.309 16 C 0.053 3.947 17 H 0.083 0.917 18 C -0.118 4.118 19 C -0.152 4.152 20 C 0.054 3.946 21 O -0.374 6.374 22 C 0.037 3.963 23 C -0.222 4.222 24 C -0.056 4.056 25 H 0.275 0.725 26 H 0.132 0.868 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.560 -13.968 0.261 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.091 0.909 9 C 0.285 3.715 10 O -0.434 6.434 11 C -0.136 4.136 12 C -0.075 4.075 13 C -0.179 4.179 14 C 0.063 3.937 15 O -0.224 6.224 16 C -0.004 4.004 17 H 0.101 0.899 18 C -0.156 4.156 19 C -0.190 4.190 20 C -0.023 4.023 21 O -0.293 6.293 22 C -0.040 4.040 23 C -0.240 4.240 24 C -0.074 4.074 25 H 0.086 0.914 26 H 0.150 0.850 27 H 0.139 0.861 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.836 -13.957 0.195 19.654 hybrid contribution 0.604 0.647 0.126 0.894 sum 14.441 -13.311 0.322 19.642 Atomic orbital electron populations 1.69945 1.07548 1.28225 1.30674 1.26007 0.94641 1.01000 0.92726 0.86436 0.80114 0.80564 0.79878 1.18866 1.20246 1.18894 1.20905 0.94887 0.91685 1.47403 0.90853 1.18057 0.88434 0.85835 0.79183 1.90502 1.15036 1.88533 1.49294 1.21844 0.94072 0.97860 0.99853 1.21112 1.00495 0.90756 0.95154 1.20182 0.90485 0.98820 1.08451 1.19141 0.91653 0.84043 0.98871 1.85987 1.18758 1.29107 1.88551 1.22966 0.79710 0.99778 0.97923 0.89901 1.21644 0.95061 0.96476 1.02417 1.22205 0.94920 1.03275 0.98596 1.22665 0.98730 0.87306 0.93572 1.87996 1.19600 1.36225 1.85432 1.23177 0.80857 1.03922 0.96049 1.21101 0.99558 0.92499 1.10876 1.21251 0.94149 0.97130 0.94892 0.91417 0.85008 0.86063 0.90401 0.90701 0.90614 0.90009 0.92932 0.88524 0.92074 0.87794 0.86018 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.20 11.73 55.57 0.65 -20.55 16 2 C 0.08 2.14 5.50 -17.31 -0.10 2.05 16 3 Si 0.91 19.22 29.56 -169.99 -5.03 14.20 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.52 -14.22 8.86 -37.45 -0.33 -14.56 16 8 H 0.07 1.81 6.01 -52.48 -0.32 1.50 16 9 C 0.39 11.06 6.91 -34.43 -0.24 10.82 16 10 O -0.54 -17.36 14.89 5.08 0.08 -17.28 16 11 C -0.13 -3.19 5.89 -104.81 -0.62 -3.81 16 12 C -0.06 -1.21 9.57 -39.35 -0.38 -1.59 16 13 C -0.16 -2.93 9.95 -39.64 -0.39 -3.33 16 14 C 0.11 1.85 6.62 -38.89 -0.26 1.60 16 15 O -0.31 -4.66 9.79 -18.66 -0.18 -4.84 16 16 C 0.05 0.64 2.31 -26.59 -0.06 0.58 16 17 H 0.08 1.04 6.30 -51.93 -0.33 0.71 16 18 C -0.12 -1.11 5.68 -26.55 -0.15 -1.26 16 19 C -0.15 -1.14 6.14 -26.59 -0.16 -1.30 16 20 C 0.05 0.44 6.84 37.21 0.25 0.69 16 21 O -0.37 -4.30 10.77 -35.23 -0.38 -4.68 16 22 C 0.04 0.43 6.12 37.21 0.23 0.66 16 23 C -0.22 -3.85 8.22 -39.64 -0.33 -4.17 16 24 C -0.06 -1.14 9.41 -39.34 -0.37 -1.51 16 25 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 26 H 0.13 2.85 7.65 -52.49 -0.40 2.45 16 27 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.31 6.89 -51.93 -0.36 0.95 16 36 H 0.12 1.80 5.38 -52.49 -0.28 1.52 16 37 H 0.13 2.56 6.19 -52.49 -0.33 2.24 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -32.65 307.84 -7.65 -40.29 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.53 Total: 3.34 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.90 Total: -15.12 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.65 Total: -20.55 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.49 Total: -26.80 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.65 -7.65 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.420 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds