Wall clock time and date at job start Mon Mar 30 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86809 * 119.99415 * 2 1 4 4 H 1.48495 * 109.46814 * 240.00320 * 3 2 1 5 5 H 1.48497 * 109.47251 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46877 * 120.00274 * 3 2 1 7 7 C 1.40341 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.41754 * 119.99826 * 359.97438 * 7 2 1 10 10 O 1.21819 * 120.00392 * 359.97438 * 9 7 2 11 11 C 1.47577 * 119.99947 * 180.02562 * 9 7 2 12 12 C 1.39946 * 120.09180 * 180.02562 * 11 9 7 13 13 C 1.37119 * 119.90296 * 180.02562 * 12 11 9 14 14 C 1.39166 * 120.09626 * 359.97438 * 13 12 11 15 15 O 1.35653 * 119.90953 * 179.97438 * 14 13 12 16 16 C 1.42907 * 117.00309 * 185.36252 * 15 14 13 17 17 H 1.08998 * 109.51737 * 35.32846 * 16 15 14 18 18 C 1.53180 * 109.52190 * 155.45411 * 16 15 14 19 19 C 1.53180 * 109.10691 * 176.83928 * 18 16 15 20 20 C 1.53101 * 109.15746 * 303.15784 * 19 18 16 21 21 O 1.42899 * 109.49054 * 57.47140 * 20 19 18 22 22 C 1.42900 * 114.09754 * 298.88712 * 21 20 19 23 23 C 1.39161 * 120.18620 * 0.26159 * 14 13 12 24 24 C 1.37125 * 120.09625 * 359.48368 * 23 14 13 25 25 H 0.96995 * 120.00868 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05139 * 359.97438 * 12 11 9 27 27 H 1.08006 * 119.95657 * 179.97438 * 13 12 11 28 28 H 1.08996 * 109.54503 * 296.75218 * 18 16 15 29 29 H 1.09000 * 109.54408 * 56.93104 * 18 16 15 30 30 H 1.09001 * 109.52088 * 62.96981 * 19 18 16 31 31 H 1.08994 * 109.52109 * 183.15418 * 19 18 16 32 32 H 1.09000 * 109.40354 * 297.48953 * 20 19 18 33 33 H 1.09003 * 109.49096 * 177.51171 * 20 19 18 34 34 H 1.09000 * 109.48210 * 301.17683 * 22 21 20 35 35 H 1.09001 * 109.48051 * 181.14292 * 22 21 20 36 36 H 1.07997 * 119.95522 * 179.71922 * 23 14 13 37 37 H 1.07996 * 120.05448 * 180.25748 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6179 0.0000 4 1 3.0928 1.6966 -1.2125 5 1 1.2741 2.7465 0.0006 6 1 3.0930 1.6966 1.2125 7 6 2.0071 -1.2153 -0.0005 8 1 3.0872 -1.2152 -0.0010 9 6 1.2984 -2.4430 -0.0005 10 8 0.0803 -2.4432 0.0004 11 6 2.0364 -3.7210 -0.0005 12 6 1.3387 -4.9341 -0.0011 13 6 2.0283 -6.1193 -0.0006 14 6 3.4200 -6.1170 0.0000 15 8 4.0984 -7.2917 0.0010 16 6 5.5206 -7.2195 0.1205 17 1 5.7893 -6.3923 0.7775 18 6 6.0523 -8.5315 0.7057 19 6 7.5822 -8.4744 0.7560 20 6 8.1214 -8.2027 -0.6509 21 8 7.5639 -6.9845 -1.1481 22 6 6.1395 -6.9985 -1.2621 23 6 4.1177 -4.9129 0.0055 24 6 3.4359 -3.7231 -0.0003 25 1 -0.4851 0.8399 0.0004 26 1 0.2588 -4.9369 -0.0011 27 1 1.4907 -7.0561 -0.0006 28 1 5.6591 -8.6673 1.7131 29 1 5.7391 -9.3647 0.0766 30 1 7.8950 -7.6731 1.4256 31 1 7.9705 -9.4260 1.1190 32 1 7.8440 -9.0252 -1.3101 33 1 9.2075 -8.1170 -0.6139 34 1 5.8362 -7.8053 -1.9294 35 1 5.7977 -6.0453 -1.6653 36 1 5.1976 -4.9154 0.0105 37 1 3.9781 -2.7891 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:22 Heat of formation + Delta-G solvation = -127.757858 kcal Electronic energy + Delta-G solvation = -20731.554338 eV Core-core repulsion = 17437.988816 eV Total energy + Delta-G solvation = -3293.565522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57856 -40.06147 -38.97937 -37.47630 -34.79499 -34.33321 -32.48718 -31.42030 -30.91331 -28.59129 -26.15712 -25.14992 -23.95968 -23.37729 -21.64850 -21.02350 -19.31031 -18.61332 -17.75746 -17.49557 -17.26648 -16.55822 -16.21585 -15.97042 -15.58869 -15.32534 -14.96460 -14.72996 -14.53306 -14.32409 -14.01555 -13.94906 -13.63429 -13.30558 -13.14646 -12.94408 -12.67763 -12.47485 -12.18746 -12.10321 -12.07469 -11.93840 -11.59738 -11.29328 -10.98396 -10.52415 -10.00434 -9.62839 -9.05831 -8.34881 -7.08391 0.18451 0.46093 1.38045 1.40439 1.53576 2.00035 2.19723 2.20927 2.83228 2.94392 3.57851 3.63861 3.73914 3.80804 3.89754 3.93459 4.01915 4.09147 4.25482 4.37083 4.43322 4.51694 4.56818 4.67687 4.72582 4.75380 4.87405 4.97804 5.05684 5.09611 5.18283 5.22878 5.31091 5.43758 5.72235 5.76365 5.95934 6.10558 6.44121 6.69036 6.79312 8.24391 8.48511 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.003823 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.598167 B = 7321.915909 C = 8119.123913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.545 4.545 8 H 0.096 0.904 9 C 0.364 3.636 10 O -0.600 6.600 11 C -0.178 4.178 12 C -0.066 4.066 13 C -0.158 4.158 14 C 0.128 3.872 15 O -0.307 6.307 16 C 0.045 3.955 17 H 0.081 0.919 18 C -0.117 4.117 19 C -0.146 4.146 20 C 0.045 3.955 21 O -0.391 6.391 22 C 0.040 3.960 23 C -0.210 4.210 24 C -0.053 4.053 25 H 0.282 0.718 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.153 0.847 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.072 -15.026 0.457 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.575 4.575 8 H 0.114 0.886 9 C 0.265 3.735 10 O -0.495 6.495 11 C -0.180 4.180 12 C -0.084 4.084 13 C -0.177 4.177 14 C 0.082 3.918 15 O -0.221 6.221 16 C -0.011 4.011 17 H 0.099 0.901 18 C -0.154 4.154 19 C -0.183 4.183 20 C -0.031 4.031 21 O -0.310 6.310 22 C -0.037 4.037 23 C -0.229 4.229 24 C -0.071 4.071 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.166 0.834 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.170 0.830 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.386 -15.051 0.394 22.999 hybrid contribution -0.370 0.765 0.063 0.852 sum 17.015 -14.286 0.457 22.222 Atomic orbital electron populations 1.70100 1.10030 1.29974 1.31605 1.27309 0.95514 1.05672 0.91191 0.85093 0.78523 0.74257 0.80717 1.17428 1.19395 1.17419 1.21441 0.96191 0.92287 1.47572 0.88635 1.18786 0.88207 0.88415 0.78117 1.90439 1.17178 1.89806 1.52065 1.21483 0.95512 0.96495 1.04466 1.21019 0.99912 0.91469 0.96042 1.20313 0.91280 0.98513 1.07573 1.19178 0.91511 0.84910 0.96177 1.86016 1.20678 1.27643 1.87786 1.23298 0.77762 1.01568 0.98509 0.90115 1.21704 0.96371 0.94909 1.02424 1.22201 0.93265 1.04634 0.98217 1.22946 0.99715 0.86431 0.94011 1.87980 1.19063 1.38149 1.85819 1.23061 0.81415 1.03558 0.95668 1.21296 1.00937 0.91329 1.09303 1.21254 0.92674 0.98624 0.94587 0.90715 0.86724 0.83445 0.90107 0.90039 0.90841 0.87413 0.91882 0.86699 0.91456 0.89013 0.82980 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.37 11.73 21.89 0.26 -47.12 16 2 C 0.02 1.21 5.50 85.40 0.47 1.68 16 3 Si 1.00 39.45 29.56 68.60 2.03 41.48 16 4 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.54 -30.84 8.86 23.65 0.21 -30.63 16 8 H 0.10 4.76 6.01 -2.91 -0.02 4.75 16 9 C 0.36 21.92 6.91 25.61 0.18 22.10 16 10 O -0.60 -41.06 14.89 -4.73 -0.07 -41.13 16 11 C -0.18 -8.77 5.89 -19.98 -0.12 -8.89 16 12 C -0.07 -2.93 9.57 22.42 0.21 -2.71 16 13 C -0.16 -5.66 9.95 22.23 0.22 -5.44 16 14 C 0.13 4.16 6.62 22.71 0.15 4.31 16 15 O -0.31 -8.37 9.79 -89.68 -0.88 -9.25 16 16 C 0.05 0.95 2.31 30.69 0.07 1.03 16 17 H 0.08 1.78 6.30 -2.39 -0.02 1.76 16 18 C -0.12 -1.79 5.68 30.71 0.17 -1.61 16 19 C -0.15 -1.62 6.14 30.69 0.19 -1.43 16 20 C 0.04 0.57 6.84 72.02 0.49 1.06 16 21 O -0.39 -7.89 10.77 -148.98 -1.60 -9.50 16 22 C 0.04 0.84 6.12 72.01 0.44 1.28 16 23 C -0.21 -6.92 8.22 22.23 0.18 -6.74 16 24 C -0.05 -2.15 9.41 22.42 0.21 -1.94 16 25 H 0.28 15.15 8.29 -92.71 -0.77 14.39 16 26 H 0.11 5.35 7.65 -2.91 -0.02 5.33 16 27 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 2.11 6.89 -2.39 -0.02 2.09 16 36 H 0.15 4.07 5.38 -2.91 -0.02 4.05 16 37 H 0.14 5.26 6.19 -2.91 -0.02 5.24 16 Total: -1.00 -75.21 307.84 3.91 -71.30 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 1.09 Total: 22.15 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.09 Total: -27.93 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.26 Total: -47.12 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -2.55 Total: -59.88 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -75.21 3.91 -71.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.458 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds