Wall clock time and date at job start Mon Mar 30 2020 01:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47098 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46822 * 120.00276 * 3 2 1 6 6 H 1.48500 * 109.47439 * 240.00042 * 3 2 1 7 7 C 1.40347 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99893 * 4.84687 * 7 2 1 9 9 C 1.41758 * 119.99908 * 184.85071 * 7 2 1 10 10 O 1.21820 * 120.00087 * 6.84750 * 9 7 2 11 11 C 1.47577 * 119.99913 * 186.84522 * 9 7 2 12 12 C 1.39949 * 120.09070 * 359.72606 * 11 9 7 13 13 C 1.37594 * 119.90448 * 179.71768 * 12 11 9 14 14 C 1.39168 * 120.09303 * 0.55786 * 13 12 11 15 15 O 1.35660 * 119.90805 * 179.70020 * 14 13 12 16 16 C 1.42898 * 116.99821 * 0.02562 * 15 14 13 17 17 C 1.52997 * 109.47184 * 180.02562 * 16 15 14 18 18 H 1.09004 * 110.27552 * 54.30074 * 17 16 15 19 19 C 1.54940 * 110.31276 * 176.39430 * 17 16 15 20 20 C 1.55410 * 100.89721 * 155.29022 * 19 17 16 21 21 C 1.54382 * 102.30872 * 325.99019 * 20 19 17 22 22 O 1.43243 * 107.58832 * 21.28405 * 21 20 19 23 23 C 1.39168 * 120.18606 * 359.71701 * 14 13 12 24 24 C 1.37593 * 120.09255 * 0.02562 * 23 14 13 25 25 H 0.96998 * 119.99606 * 174.91456 * 1 2 3 26 26 H 1.08000 * 120.04894 * 0.02562 * 12 11 9 27 27 H 1.07996 * 119.95428 * 180.29843 * 13 12 11 28 28 H 1.08997 * 109.47431 * 300.00308 * 16 15 14 29 29 H 1.09003 * 109.46919 * 60.00478 * 16 15 14 30 30 H 1.09000 * 111.12441 * 273.28122 * 19 17 16 31 31 H 1.09000 * 111.12803 * 37.43923 * 19 17 16 32 32 H 1.09001 * 110.88670 * 207.75236 * 20 19 17 33 33 H 1.09000 * 110.93409 * 84.24983 * 20 19 17 34 34 H 1.09003 * 109.83321 * 261.77486 * 21 20 19 35 35 H 1.09001 * 109.83602 * 140.79820 * 21 20 19 36 36 H 1.08001 * 119.95053 * 179.97438 * 23 14 13 37 37 H 1.08004 * 120.04597 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 1.2743 2.7464 0.0006 5 1 3.0931 1.6963 1.2125 6 1 3.0931 1.6965 -1.2125 7 6 2.0071 -1.2154 -0.0005 8 1 1.4700 -2.1490 -0.0800 9 6 3.4208 -1.2176 0.1033 10 8 4.0174 -0.1774 0.3180 11 6 4.1699 -2.4800 -0.0487 12 6 3.4860 -3.6770 -0.2896 13 6 4.1887 -4.8509 -0.4365 14 6 5.5766 -4.8509 -0.3342 15 8 6.2651 -6.0114 -0.4736 16 6 5.5013 -7.1928 -0.7240 17 6 6.4431 -8.3919 -0.8502 18 1 7.0829 -8.4639 0.0293 19 6 5.6297 -9.6980 -1.0319 20 6 6.6700 -10.5931 -1.7611 21 6 7.4382 -9.5688 -2.6238 22 8 7.2411 -8.2761 -2.0391 23 6 6.2601 -3.6637 -0.0890 24 6 5.5656 -2.4846 0.0539 25 1 -0.4849 -0.8368 -0.0745 26 1 2.4087 -3.6786 -0.3651 27 1 3.6621 -5.7743 -0.6272 28 1 4.8095 -7.3600 0.1016 29 1 4.9394 -7.0726 -1.6502 30 1 5.3497 -10.1237 -0.0683 31 1 4.7513 -9.5304 -1.6552 32 1 6.1738 -11.3338 -2.3882 33 1 7.3368 -11.0762 -1.0468 34 1 7.0492 -9.5773 -3.6420 35 1 8.5004 -9.8136 -2.6305 36 1 7.3372 -3.6681 -0.0099 37 1 6.0968 -1.5637 0.2446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233526772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:13 Heat of formation + Delta-G solvation = -121.317978 kcal Electronic energy + Delta-G solvation = -20297.587425 eV Core-core repulsion = 17004.301158 eV Total energy + Delta-G solvation = -3293.286267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16547 -39.33287 -37.78422 -36.04600 -33.17373 -32.59445 -31.49372 -30.53130 -29.47823 -26.82219 -25.82909 -22.70665 -22.47682 -21.97703 -21.08854 -19.59259 -17.95949 -17.66921 -17.34456 -16.38579 -15.72417 -15.47749 -15.18940 -14.70381 -14.31529 -13.98643 -13.74312 -13.53991 -13.32915 -12.91884 -12.71500 -12.32198 -12.23875 -12.17027 -12.09445 -11.68637 -11.62084 -11.36382 -11.22550 -10.73806 -10.43103 -10.36010 -10.16903 -9.80014 -9.28933 -9.13023 -8.55148 -7.81394 -7.64879 -7.08403 -5.22577 1.66387 1.88037 3.16817 3.40045 3.45209 3.63153 3.93734 4.02694 4.03396 4.41127 4.46101 4.48760 4.52864 4.74775 4.80085 4.88973 5.10479 5.12843 5.25207 5.27677 5.31118 5.36529 5.45026 5.47816 5.53907 5.69942 5.76029 5.91765 5.98840 6.15740 6.50547 6.70583 6.71469 6.87037 7.18214 7.22490 7.50257 7.71697 7.77381 8.28716 8.55626 9.83158 10.03604 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.003187 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.835493 B = 8784.713334 C = 9220.240764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.053 3.947 3 Si 1.132 2.868 4 H -0.323 1.323 5 H -0.277 1.277 6 H -0.287 1.287 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.383 3.617 10 O -0.587 6.587 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.223 4.223 14 C 0.120 3.880 15 O -0.310 6.310 16 C 0.062 3.938 17 C 0.084 3.916 18 H 0.082 0.918 19 C -0.149 4.149 20 C -0.155 4.155 21 C 0.047 3.953 22 O -0.370 6.370 23 C -0.163 4.163 24 C -0.050 4.050 25 H 0.282 0.718 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -21.145 -2.715 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.168 4.168 3 Si 0.964 3.036 4 H -0.255 1.255 5 H -0.205 1.205 6 H -0.214 1.214 7 C -0.591 4.591 8 H 0.095 0.905 9 C 0.288 3.712 10 O -0.488 6.488 11 C -0.140 4.140 12 C -0.069 4.069 13 C -0.241 4.241 14 C 0.075 3.925 15 O -0.224 6.224 16 C -0.014 4.014 17 C 0.026 3.974 18 H 0.100 0.900 19 C -0.187 4.187 20 C -0.192 4.192 21 C -0.030 4.030 22 O -0.289 6.289 23 C -0.182 4.182 24 C -0.069 4.069 25 H 0.093 0.907 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.714 -19.055 -2.634 21.549 hybrid contribution -0.367 -2.547 -0.117 2.576 sum 9.347 -21.601 -2.751 23.697 Atomic orbital electron populations 1.70580 1.08123 1.32693 1.31316 1.27666 0.95286 1.05997 0.87878 0.82289 0.71490 0.70129 0.79644 1.25513 1.20455 1.21412 1.22079 0.93911 0.96331 1.46782 0.90530 1.18248 0.89423 0.85620 0.77953 1.90006 1.71323 1.32844 1.54610 1.21252 0.93918 0.97012 1.01858 1.21313 1.00245 0.90943 0.94407 1.21117 0.92735 0.99435 1.10848 1.19170 0.90465 0.85599 0.97230 1.85998 1.35713 1.14081 1.86601 1.22897 0.93704 0.83391 1.01389 1.23005 0.91874 0.92882 0.89635 0.90033 1.23261 0.98869 0.94353 1.02216 1.23130 0.98023 0.98532 0.99541 1.23157 0.99999 0.82684 0.97115 1.88556 1.72231 1.27892 1.40264 1.20314 0.99865 0.90096 1.07886 1.21230 0.93876 0.97025 0.94739 0.90670 0.85168 0.86222 0.90773 0.91345 0.89259 0.89808 0.89752 0.90310 0.91217 0.91305 0.85710 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.19 13.64 55.57 0.76 -21.43 16 2 C 0.05 1.48 5.52 -17.31 -0.10 1.39 16 3 Si 1.13 29.36 25.98 -169.99 -4.42 24.94 16 4 H -0.32 -8.01 7.11 56.52 0.40 -7.61 16 5 H -0.28 -7.42 6.76 56.52 0.38 -7.04 16 6 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.56 -15.52 9.27 -37.45 -0.35 -15.87 16 8 H 0.08 2.03 6.25 -52.49 -0.33 1.71 16 9 C 0.38 10.38 6.74 -34.43 -0.23 10.15 16 10 O -0.59 -16.99 11.92 5.08 0.06 -16.93 16 11 C -0.14 -3.21 5.89 -104.81 -0.62 -3.83 16 12 C -0.05 -1.03 9.43 -39.18 -0.37 -1.40 16 13 C -0.22 -3.83 9.01 -39.47 -0.36 -4.19 16 14 C 0.12 2.10 6.70 -38.89 -0.26 1.84 16 15 O -0.31 -4.89 10.12 -19.41 -0.20 -5.08 16 16 C 0.06 0.73 4.44 37.16 0.16 0.89 16 17 C 0.08 0.84 3.72 -25.71 -0.10 0.74 16 18 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 19 C -0.15 -0.99 6.58 -24.43 -0.16 -1.16 16 20 C -0.15 -0.90 7.02 -24.73 -0.17 -1.08 16 21 C 0.05 0.38 7.80 37.88 0.30 0.68 16 22 O -0.37 -4.49 11.04 -35.96 -0.40 -4.89 16 23 C -0.16 -2.95 9.97 -39.47 -0.39 -3.35 16 24 C -0.05 -1.04 9.59 -39.18 -0.38 -1.42 16 25 H 0.28 7.41 8.72 -40.82 -0.36 7.06 16 26 H 0.13 2.58 6.21 -52.49 -0.33 2.25 16 27 H 0.12 1.67 6.28 -52.49 -0.33 1.34 16 28 H 0.07 0.74 7.65 -51.93 -0.40 0.34 16 29 H 0.07 0.80 7.65 -51.93 -0.40 0.40 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 37 H 0.13 2.74 7.65 -52.48 -0.40 2.34 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -32.17 310.72 -7.25 -39.42 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.73 Total: -4.11 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -3.02 Total: -16.59 kcal Atomic # 7 Polarization: -22.19 SS G_CDS: 0.76 Total: -21.43 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.53 Total: -26.91 kcal Atomic # 14 Polarization: 29.36 SS G_CDS: -4.42 Total: 24.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.17 -7.25 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.899 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds