Wall clock time and date at job start Mon Mar 30 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48495 * 109.47098 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46822 * 120.00276 * 3 2 1 6 6 H 1.48500 * 109.47439 * 240.00042 * 3 2 1 7 7 C 1.40347 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99893 * 4.84687 * 7 2 1 9 9 C 1.41758 * 119.99908 * 184.85071 * 7 2 1 10 10 O 1.21820 * 120.00087 * 6.84750 * 9 7 2 11 11 C 1.47577 * 119.99913 * 186.84522 * 9 7 2 12 12 C 1.39949 * 120.09070 * 359.72606 * 11 9 7 13 13 C 1.37594 * 119.90448 * 179.71768 * 12 11 9 14 14 C 1.39168 * 120.09303 * 0.55786 * 13 12 11 15 15 O 1.35660 * 119.90805 * 179.70020 * 14 13 12 16 16 C 1.42898 * 116.99821 * 0.02562 * 15 14 13 17 17 C 1.52997 * 109.47184 * 180.02562 * 16 15 14 18 18 H 1.09004 * 110.27552 * 54.30074 * 17 16 15 19 19 C 1.54940 * 110.31276 * 176.39430 * 17 16 15 20 20 C 1.55410 * 100.89721 * 155.29022 * 19 17 16 21 21 C 1.54382 * 102.30872 * 325.99019 * 20 19 17 22 22 O 1.43243 * 107.58832 * 21.28405 * 21 20 19 23 23 C 1.39168 * 120.18606 * 359.71701 * 14 13 12 24 24 C 1.37593 * 120.09255 * 0.02562 * 23 14 13 25 25 H 0.96998 * 119.99606 * 174.91456 * 1 2 3 26 26 H 1.08000 * 120.04894 * 0.02562 * 12 11 9 27 27 H 1.07996 * 119.95428 * 180.29843 * 13 12 11 28 28 H 1.08997 * 109.47431 * 300.00308 * 16 15 14 29 29 H 1.09003 * 109.46919 * 60.00478 * 16 15 14 30 30 H 1.09000 * 111.12441 * 273.28122 * 19 17 16 31 31 H 1.09000 * 111.12803 * 37.43923 * 19 17 16 32 32 H 1.09001 * 110.88670 * 207.75236 * 20 19 17 33 33 H 1.09000 * 110.93409 * 84.24983 * 20 19 17 34 34 H 1.09003 * 109.83321 * 261.77486 * 21 20 19 35 35 H 1.09001 * 109.83602 * 140.79820 * 21 20 19 36 36 H 1.08001 * 119.95053 * 179.97438 * 23 14 13 37 37 H 1.08004 * 120.04597 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 1.2743 2.7464 0.0006 5 1 3.0931 1.6963 1.2125 6 1 3.0931 1.6965 -1.2125 7 6 2.0071 -1.2154 -0.0005 8 1 1.4700 -2.1490 -0.0800 9 6 3.4208 -1.2176 0.1033 10 8 4.0174 -0.1774 0.3180 11 6 4.1699 -2.4800 -0.0487 12 6 3.4860 -3.6770 -0.2896 13 6 4.1887 -4.8509 -0.4365 14 6 5.5766 -4.8509 -0.3342 15 8 6.2651 -6.0114 -0.4736 16 6 5.5013 -7.1928 -0.7240 17 6 6.4431 -8.3919 -0.8502 18 1 7.0829 -8.4639 0.0293 19 6 5.6297 -9.6980 -1.0319 20 6 6.6700 -10.5931 -1.7611 21 6 7.4382 -9.5688 -2.6238 22 8 7.2411 -8.2761 -2.0391 23 6 6.2601 -3.6637 -0.0890 24 6 5.5656 -2.4846 0.0539 25 1 -0.4849 -0.8368 -0.0745 26 1 2.4087 -3.6786 -0.3651 27 1 3.6621 -5.7743 -0.6272 28 1 4.8095 -7.3600 0.1016 29 1 4.9394 -7.0726 -1.6502 30 1 5.3497 -10.1237 -0.0683 31 1 4.7513 -9.5304 -1.6552 32 1 6.1738 -11.3338 -2.3882 33 1 7.3368 -11.0762 -1.0468 34 1 7.0492 -9.5773 -3.6420 35 1 8.5004 -9.8136 -2.6305 36 1 7.3372 -3.6681 -0.0099 37 1 6.0968 -1.5637 0.2446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:12 Heat of formation + Delta-G solvation = -141.655331 kcal Electronic energy + Delta-G solvation = -20298.469319 eV Core-core repulsion = 17004.301158 eV Total energy + Delta-G solvation = -3294.168161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30922 -40.34980 -39.49745 -37.70036 -35.31572 -33.26154 -32.56624 -31.82483 -30.99175 -28.63858 -26.81194 -24.30108 -23.70231 -22.58743 -22.12944 -21.36996 -19.68800 -19.23796 -18.10045 -17.36677 -17.15537 -16.64037 -16.52436 -16.08581 -15.78692 -15.36780 -15.36542 -14.85936 -14.65812 -14.39860 -14.17825 -14.04812 -13.45668 -13.39139 -13.12601 -12.70990 -12.60662 -12.39101 -12.27285 -12.25563 -11.94644 -11.79749 -11.69270 -11.30528 -11.28550 -10.52915 -10.04014 -9.94890 -9.21330 -9.17250 -7.38114 0.04391 0.38794 1.35321 1.52757 1.92672 2.03172 2.07724 2.39579 2.71516 2.78389 3.42260 3.49133 3.72645 3.79938 3.91360 3.94579 4.05052 4.07799 4.13663 4.29418 4.37885 4.41998 4.44807 4.52384 4.66958 4.80662 4.87748 4.93852 4.99507 5.02217 5.19967 5.21956 5.27882 5.39604 5.57501 5.64446 5.73252 6.04347 6.23024 6.39851 6.42628 7.72643 7.89531 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.003187 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.835493 B = 8784.713334 C = 9220.240764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.026 3.974 3 Si 1.159 2.841 4 H -0.304 1.304 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.375 3.625 10 O -0.613 6.613 11 C -0.182 4.182 12 C -0.051 4.051 13 C -0.212 4.212 14 C 0.136 3.864 15 O -0.317 6.317 16 C 0.050 3.950 17 C 0.078 3.922 18 H 0.081 0.919 19 C -0.143 4.143 20 C -0.148 4.148 21 C 0.037 3.963 22 O -0.407 6.407 23 C -0.164 4.164 24 C -0.054 4.054 25 H 0.286 0.714 26 H 0.129 0.871 27 H 0.158 0.842 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -24.062 -2.939 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.193 4.193 3 Si 0.991 3.009 4 H -0.235 1.235 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.612 4.612 8 H 0.098 0.902 9 C 0.282 3.718 10 O -0.516 6.516 11 C -0.183 4.183 12 C -0.069 4.069 13 C -0.231 4.231 14 C 0.090 3.910 15 O -0.231 6.231 16 C -0.025 4.025 17 C 0.021 3.979 18 H 0.099 0.901 19 C -0.180 4.180 20 C -0.185 4.185 21 C -0.039 4.039 22 O -0.327 6.327 23 C -0.182 4.182 24 C -0.072 4.072 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.175 0.825 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.166 0.834 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.175 -21.996 -2.867 24.404 hybrid contribution -0.395 -1.848 -0.081 1.891 sum 9.780 -23.844 -2.948 25.940 Atomic orbital electron populations 1.70569 1.08071 1.33061 1.32043 1.28198 0.95730 1.07444 0.87943 0.81933 0.70906 0.69631 0.78472 1.23499 1.22270 1.22050 1.22258 0.94633 0.96525 1.47815 0.90157 1.18654 0.89673 0.86923 0.76598 1.89970 1.71892 1.34297 1.55409 1.20960 0.94864 0.96245 1.06274 1.21321 1.00302 0.91048 0.94233 1.21377 0.92752 0.99700 1.09252 1.19274 0.90592 0.86208 0.94903 1.86023 1.36675 1.14509 1.85899 1.23319 0.94493 0.82234 1.02423 1.23146 0.92076 0.93527 0.89138 0.90085 1.23286 0.98662 0.92547 1.03512 1.23138 0.97754 0.98099 0.99504 1.23365 1.00857 0.82083 0.97626 1.88512 1.72800 1.30302 1.41117 1.20488 1.01000 0.89544 1.07173 1.21191 0.93050 0.97959 0.95019 0.90283 0.85322 0.82481 0.88424 0.91031 0.87261 0.89329 0.87936 0.89341 0.90871 0.90851 0.83412 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.00 13.64 21.89 0.30 -44.70 16 2 C 0.03 1.46 5.52 85.40 0.47 1.93 16 3 Si 1.16 60.32 25.98 68.60 1.78 62.11 16 4 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 5 H -0.29 -16.03 6.76 99.48 0.67 -15.35 16 6 H -0.29 -15.35 7.11 99.48 0.71 -14.64 16 7 C -0.58 -32.76 9.27 23.65 0.22 -32.55 16 8 H 0.08 4.33 6.25 -2.91 -0.02 4.31 16 9 C 0.38 20.80 6.74 25.61 0.17 20.97 16 10 O -0.61 -36.39 11.92 -4.73 -0.06 -36.44 16 11 C -0.18 -8.46 5.89 -19.99 -0.12 -8.58 16 12 C -0.05 -2.00 9.43 22.53 0.21 -1.79 16 13 C -0.21 -6.73 9.01 22.34 0.20 -6.53 16 14 C 0.14 4.40 6.70 22.72 0.15 4.55 16 15 O -0.32 -9.07 10.12 -89.06 -0.90 -9.97 16 16 C 0.05 1.01 4.44 71.98 0.32 1.33 16 17 C 0.08 1.35 3.72 31.26 0.12 1.47 16 18 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 19 C -0.14 -1.38 6.58 32.09 0.21 -1.17 16 20 C -0.15 -1.23 7.02 31.89 0.22 -1.00 16 21 C 0.04 0.52 7.80 72.45 0.56 1.08 16 22 O -0.41 -9.13 11.04 -148.28 -1.64 -10.76 16 23 C -0.16 -5.66 9.97 22.34 0.22 -5.43 16 24 C -0.05 -2.22 9.59 22.53 0.22 -2.00 16 25 H 0.29 15.07 8.72 -92.71 -0.81 14.26 16 26 H 0.13 5.03 6.21 -2.91 -0.02 5.01 16 27 H 0.16 3.73 6.28 -2.91 -0.02 3.72 16 28 H 0.10 1.53 7.65 -2.39 -0.02 1.51 16 29 H 0.07 1.42 7.65 -2.39 -0.02 1.40 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.13 5.32 7.65 -2.91 -0.02 5.30 16 Total: -1.00 -69.68 310.72 3.68 -66.01 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.01 Total: 1.48 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.19 Total: -27.72 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.30 Total: -44.70 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -2.59 Total: -57.18 kcal Atomic # 14 Polarization: 60.32 SS G_CDS: 1.78 Total: 62.11 kcal Total: -69.68 3.68 -66.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.648 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds