Wall clock time and date at job start Mon Mar 30 2020 01:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30542 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47413 * 264.99295 * 3 2 1 5 5 H 1.48498 * 109.46933 * 144.99025 * 3 2 1 6 6 H 1.48502 * 109.47045 * 24.99242 * 3 2 1 7 7 C 1.40343 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00008 * 187.04471 * 7 2 1 9 9 C 1.41769 * 119.99784 * 7.04576 * 7 2 1 10 10 O 1.21817 * 120.00334 * 7.46021 * 9 7 2 11 11 C 1.47566 * 119.99660 * 187.46013 * 9 7 2 12 12 C 1.39955 * 120.09573 * 359.72302 * 11 9 7 13 13 C 1.37593 * 119.90287 * 179.76704 * 12 11 9 14 14 C 1.39161 * 120.09826 * 0.48909 * 13 12 11 15 15 O 1.35652 * 119.90715 * 179.76294 * 14 13 12 16 16 C 1.42899 * 117.00341 * 0.02562 * 15 14 13 17 17 C 1.53005 * 109.47482 * 179.97438 * 16 15 14 18 18 H 1.08995 * 109.82165 * 305.70467 * 17 16 15 19 19 C 1.54379 * 109.83014 * 184.81303 * 17 16 15 20 20 C 1.55454 * 102.18664 * 219.18488 * 19 17 16 21 21 C 1.54956 * 100.98939 * 34.03779 * 20 19 17 22 22 O 1.43244 * 109.82849 * 66.58874 * 17 16 15 23 23 C 1.39170 * 120.18598 * 359.78493 * 14 13 12 24 24 C 1.37596 * 120.09093 * 359.95840 * 23 14 13 25 25 H 0.96994 * 119.99081 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.04417 * 359.97438 * 12 11 9 27 27 H 1.08003 * 119.94747 * 180.25273 * 13 12 11 28 28 H 1.08999 * 109.47147 * 300.00023 * 16 15 14 29 29 H 1.09001 * 109.46989 * 59.99507 * 16 15 14 30 30 H 1.08997 * 110.84723 * 337.32156 * 19 17 16 31 31 H 1.08999 * 110.84838 * 100.94526 * 19 17 16 32 32 H 1.09002 * 111.05443 * 276.12895 * 20 19 17 33 33 H 1.08998 * 111.18859 * 152.00983 * 20 19 17 34 34 H 1.08994 * 110.30667 * 204.69343 * 21 20 19 35 35 H 1.08999 * 110.38698 * 82.56958 * 21 20 19 36 36 H 1.07992 * 119.95265 * 179.97438 * 23 14 13 37 37 H 1.08002 * 120.04340 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.5928 1.9853 -1.3947 5 1 3.4800 1.4729 0.8032 6 1 1.3880 2.6809 0.5915 7 6 2.0071 -1.2154 -0.0005 8 1 3.0809 -1.2190 0.1142 9 6 1.3062 -2.4384 -0.1517 10 8 0.1172 -2.4304 -0.4165 11 6 2.0171 -3.7212 0.0118 12 6 3.3844 -3.7328 0.3103 13 6 4.0422 -4.9311 0.4665 14 6 3.3523 -6.1305 0.3182 15 8 4.0057 -7.3098 0.4684 16 6 5.3991 -7.2445 0.7784 17 6 5.9595 -8.6622 0.9095 18 1 5.3725 -9.2261 1.6343 19 6 7.4342 -8.6026 1.3625 20 6 8.0813 -9.7402 0.5237 21 6 7.2547 -9.6500 -0.7838 22 8 5.9219 -9.3191 -0.3629 23 6 1.9938 -6.1236 0.0158 24 6 1.3272 -4.9297 -0.1370 25 1 -0.4848 0.8401 0.0004 26 1 3.9215 -2.8025 0.4211 27 1 5.0964 -4.9409 0.7009 28 1 5.9244 -6.7180 -0.0184 29 1 5.5375 -6.7111 1.7189 30 1 7.8774 -7.6381 1.1148 31 1 7.5208 -8.8081 2.4294 32 1 7.9473 -10.7080 1.0071 33 1 9.1362 -9.5402 0.3362 34 1 7.2607 -10.6089 -1.3020 35 1 7.6522 -8.8683 -1.4311 36 1 1.4622 -7.0566 -0.0989 37 1 0.2729 -4.9252 -0.3713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:14 Heat of formation + Delta-G solvation = -128.586934 kcal Electronic energy + Delta-G solvation = -20281.916488 eV Core-core repulsion = 16988.315015 eV Total energy + Delta-G solvation = -3293.601473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24137 -40.27284 -39.12016 -37.43038 -34.79671 -33.22929 -32.46879 -31.71909 -30.84891 -28.64827 -26.82095 -24.26035 -23.64887 -22.63816 -22.01956 -21.27320 -19.17122 -18.61320 -18.10629 -17.49002 -17.14610 -16.64898 -16.39509 -15.97840 -15.52275 -15.36376 -14.82344 -14.54799 -14.46800 -14.33822 -14.15138 -13.62343 -13.25753 -13.18468 -13.06806 -12.74703 -12.67120 -12.43573 -12.30586 -12.16246 -12.04890 -11.78467 -11.69060 -11.60076 -10.99020 -10.52218 -9.96516 -9.61522 -9.04996 -8.39034 -7.06172 0.21761 0.46093 1.38092 1.40042 1.55563 2.14315 2.19454 2.22130 2.84403 2.89326 3.52568 3.72983 3.73279 3.88317 3.94029 3.99240 4.11852 4.17629 4.26774 4.32802 4.39826 4.50583 4.53068 4.62078 4.74846 4.81572 4.90814 4.94959 5.03708 5.08707 5.19622 5.25155 5.31221 5.43585 5.73042 5.79639 5.97250 6.08106 6.48234 6.69387 6.79953 8.24223 8.48071 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.003248 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.913019 B = 8618.227025 C = 9249.239542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.023 3.977 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.242 1.242 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.368 3.632 10 O -0.604 6.604 11 C -0.182 4.182 12 C -0.052 4.052 13 C -0.210 4.210 14 C 0.129 3.871 15 O -0.319 6.319 16 C 0.039 3.961 17 C 0.078 3.922 18 H 0.087 0.913 19 C -0.142 4.142 20 C -0.147 4.147 21 C 0.034 3.966 22 O -0.404 6.404 23 C -0.165 4.165 24 C -0.066 4.066 25 H 0.283 0.717 26 H 0.140 0.860 27 H 0.160 0.840 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.704 -14.768 3.853 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.196 4.196 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.165 1.165 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.116 0.884 9 C 0.268 3.732 10 O -0.499 6.499 11 C -0.183 4.183 12 C -0.070 4.070 13 C -0.228 4.228 14 C 0.083 3.917 15 O -0.233 6.233 16 C -0.036 4.036 17 C 0.021 3.979 18 H 0.105 0.895 19 C -0.179 4.179 20 C -0.185 4.185 21 C -0.042 4.042 22 O -0.324 6.324 23 C -0.184 4.184 24 C -0.084 4.084 25 H 0.094 0.906 26 H 0.158 0.842 27 H 0.178 0.822 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.159 0.841 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.737 -14.989 3.611 25.045 hybrid contribution -0.148 0.890 -0.092 0.907 sum 19.589 -14.099 3.519 24.390 Atomic orbital electron populations 1.70071 1.10171 1.30082 1.31727 1.27327 0.95485 1.05771 0.91019 0.85026 0.79049 0.74358 0.79947 1.18455 1.16463 1.19330 1.21429 0.96794 0.92354 1.47038 0.88435 1.18801 0.87653 0.88418 0.78317 1.90426 1.19173 1.89878 1.50401 1.21479 0.96059 0.96360 1.04427 1.21397 0.92683 0.98617 0.94318 1.21411 1.01531 0.90929 1.08943 1.19219 0.91789 0.85039 0.95645 1.86015 1.24566 1.27475 1.85229 1.23606 0.78763 0.99221 1.01966 1.22926 0.98165 0.90681 0.86160 0.89479 1.23164 0.91103 1.00975 1.02654 1.23296 1.01180 0.99471 0.94521 1.23654 0.81729 1.01236 0.97556 1.88536 1.28964 1.78278 1.36597 1.20410 0.92470 0.98238 1.07274 1.21110 0.99605 0.91473 0.96258 0.90646 0.84186 0.82245 0.91195 0.88895 0.88984 0.87480 0.89622 0.87611 0.88957 0.91924 0.84077 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.70 11.83 21.89 0.26 -47.44 16 2 C 0.02 1.25 5.48 85.40 0.47 1.71 16 3 Si 1.00 39.30 29.57 68.60 2.03 41.33 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.24 -8.65 7.11 99.48 0.71 -7.94 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.55 -30.90 8.83 23.66 0.21 -30.69 16 8 H 0.10 4.83 6.07 -2.91 -0.02 4.82 16 9 C 0.37 22.30 6.88 25.61 0.18 22.48 16 10 O -0.60 -41.76 14.99 -4.72 -0.07 -41.83 16 11 C -0.18 -9.11 5.89 -19.99 -0.12 -9.23 16 12 C -0.05 -2.10 9.43 22.53 0.21 -1.89 16 13 C -0.21 -6.90 9.01 22.34 0.20 -6.70 16 14 C 0.13 4.46 6.70 22.72 0.15 4.61 16 15 O -0.32 -9.72 10.11 -87.34 -0.88 -10.61 16 16 C 0.04 0.83 4.27 71.98 0.31 1.14 16 17 C 0.08 1.41 3.81 31.06 0.12 1.53 16 18 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.14 -1.38 6.56 31.91 0.21 -1.18 16 20 C -0.15 -1.28 7.16 32.11 0.23 -1.05 16 21 C 0.03 0.49 7.78 72.65 0.57 1.06 16 22 O -0.40 -9.30 11.00 -146.65 -1.61 -10.91 16 23 C -0.17 -6.34 9.97 22.34 0.22 -6.12 16 24 C -0.07 -3.04 9.59 22.53 0.22 -2.83 16 25 H 0.28 15.19 8.29 -92.71 -0.77 14.43 16 26 H 0.14 5.30 6.22 -2.91 -0.02 5.28 16 27 H 0.16 3.85 6.28 -2.91 -0.02 3.83 16 28 H 0.07 1.42 7.65 -2.39 -0.02 1.40 16 29 H 0.09 1.56 7.65 -2.39 -0.02 1.54 16 30 H 0.09 0.74 7.85 -2.39 -0.02 0.72 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.14 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.11 5.47 7.65 -2.91 -0.02 5.45 16 Total: -1.00 -79.59 314.71 3.97 -75.62 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 1.08 Total: 21.01 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.17 Total: -27.16 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.26 Total: -47.44 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -2.57 Total: -63.35 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -79.59 3.97 -75.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.964 kcal (2) G-P(sol) polarization free energy of solvation -79.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds