Wall clock time and date at job start Mon Mar 30 2020 01:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46799 * 2 1 4 4 C 1.34898 * 125.89903 * 125.00015 * 3 2 1 5 5 C 1.36467 * 107.59845 * 180.02562 * 4 3 2 6 6 C 1.48429 * 126.22079 * 179.97438 * 5 4 3 7 7 C 1.39217 * 120.13174 * 310.01762 * 6 5 4 8 8 C 1.38017 * 119.97352 * 179.97438 * 7 6 5 9 9 C 1.38635 * 120.23686 * 359.97438 * 8 7 6 10 10 F 1.35108 * 119.87164 * 179.97438 * 9 8 7 11 11 C 1.38339 * 120.25715 * 0.04261 * 9 8 7 12 12 C 1.38700 * 120.02644 * 359.95571 * 11 9 8 13 13 O 1.35690 * 120.12076 * 180.29553 * 12 11 9 14 14 C 1.34814 * 116.99834 * 354.40871 * 13 12 11 15 15 H 1.08007 * 120.00124 * 5.07587 * 14 13 12 16 16 C 1.38627 * 119.99976 * 185.06923 * 14 13 12 17 17 N 1.31577 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00063 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47223 * 60.00173 * 18 16 14 20 20 H 1.48503 * 109.47129 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46826 * 300.00181 * 18 16 14 22 22 C 1.40857 * 107.55271 * 0.23930 * 5 4 3 23 23 N 1.30684 * 108.10942 * 359.59451 * 22 5 4 24 24 H 1.09001 * 109.47225 * 60.00354 * 1 2 3 25 25 H 1.09003 * 109.46632 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47375 * 299.99788 * 1 2 3 27 27 H 1.08998 * 109.47375 * 240.00212 * 2 1 3 28 28 H 1.09001 * 109.47225 * 119.99646 * 2 1 3 29 29 H 1.07998 * 126.19688 * 359.97438 * 4 3 2 30 30 H 1.08008 * 120.00701 * 359.96349 * 7 6 5 31 31 H 1.08007 * 119.87856 * 180.02562 * 8 7 6 32 32 H 1.08006 * 119.98667 * 179.97438 * 11 9 8 33 33 H 0.96998 * 120.00120 * 179.97438 * 17 16 14 34 34 H 1.08000 * 125.94809 * 179.72934 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8728 1.9181 0.8951 5 6 3.0724 3.2218 0.5444 6 6 3.9406 4.1969 1.2506 7 6 3.8282 4.3631 2.6282 8 6 4.6374 5.2704 3.2815 9 6 5.5638 6.0179 2.5709 10 9 6.3519 6.9043 3.2178 11 6 5.6834 5.8608 1.2016 12 6 4.8756 4.9521 0.5341 13 8 4.9954 4.7921 -0.8079 14 6 5.8356 5.6273 -1.4513 15 1 6.4379 6.3260 -0.8893 16 6 5.9268 5.5894 -2.8340 17 7 5.1929 4.7386 -3.5186 18 14 7.0915 6.7463 -3.7254 19 1 8.4822 6.4984 -3.2673 20 1 7.0020 6.5084 -5.1885 21 1 6.7159 8.1521 -3.4290 22 6 2.3000 3.4753 -0.6059 23 7 1.6780 2.3723 -0.9287 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3176 1.4087 1.7372 30 1 3.1078 3.7824 3.1854 31 1 4.5493 5.3978 4.3504 32 1 6.4062 6.4457 0.6523 33 1 5.2564 4.7123 -4.4862 34 1 2.2350 4.4168 -1.1310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240648878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:17 Heat of formation + Delta-G solvation = 27.606046 kcal Electronic energy + Delta-G solvation = -20580.151030 eV Core-core repulsion = 17202.155039 eV Total energy + Delta-G solvation = -3377.995991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.24710 -40.61125 -38.84972 -36.29443 -34.20970 -32.34905 -31.08326 -29.77269 -29.23944 -27.25654 -25.39950 -23.64826 -22.16947 -21.73339 -20.02450 -19.71566 -18.22359 -17.45928 -16.67072 -15.45864 -15.22143 -15.10482 -14.96117 -14.74250 -14.23234 -13.95085 -13.62624 -13.45425 -13.26625 -13.09946 -12.43299 -12.37407 -12.20926 -11.98696 -11.76450 -11.42380 -11.26662 -11.12978 -10.75903 -10.68190 -10.48043 -10.05275 -9.56436 -8.89435 -8.84902 -8.43961 -7.76593 -7.05008 -6.49912 -4.08937 1.80862 2.20019 2.47594 2.93497 3.12192 3.13081 3.15696 3.50500 3.92677 4.40537 4.67965 4.91461 4.99817 5.04190 5.16684 5.23602 5.27492 5.45072 5.54886 5.59342 5.75795 5.78532 5.98169 6.05568 6.11791 6.28304 6.47955 6.55043 6.84431 6.90203 6.99248 7.11614 7.29920 7.33823 7.51796 7.69782 7.92869 8.29777 8.94061 9.60841 10.65727 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.006854 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.168866 B = 4084.319160 C = 6162.827632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 N -0.382 5.382 4 C 0.046 3.954 5 C -0.161 4.161 6 C -0.092 4.092 7 C -0.043 4.043 8 C -0.247 4.247 9 C 0.137 3.863 10 F -0.153 7.153 11 C -0.271 4.271 12 C 0.182 3.818 13 O -0.153 6.153 14 C -0.397 4.397 15 H 0.092 0.908 16 C 0.045 3.955 17 N -0.851 5.851 18 Si 0.939 3.061 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.269 1.269 22 C 0.091 3.909 23 N -0.303 5.303 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.167 0.833 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.272 0.728 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 -6.054 8.354 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 N -0.165 5.165 4 C -0.099 4.099 5 C -0.172 4.172 6 C -0.094 4.094 7 C -0.062 4.062 8 C -0.267 4.267 9 C 0.118 3.882 10 F -0.132 7.132 11 C -0.291 4.291 12 C 0.126 3.874 13 O -0.054 6.054 14 C -0.473 4.473 15 H 0.110 0.890 16 C -0.161 4.161 17 N -0.484 5.484 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.095 4.095 23 N -0.123 5.123 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.185 0.815 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.055 -6.984 7.096 11.653 hybrid contribution 1.544 1.173 0.265 1.957 sum -4.511 -5.811 7.361 10.407 Atomic orbital electron populations 1.22042 0.94289 1.02238 1.03548 1.21517 0.95618 0.78307 1.03197 1.48403 1.36580 1.09905 1.21626 1.22380 0.96525 0.94348 0.96674 1.18580 1.05265 0.93108 1.00281 1.17197 0.99043 1.01337 0.91871 1.20482 0.97156 0.96320 0.92221 1.20427 1.02622 1.04109 0.99556 1.17491 0.91029 0.89548 0.90127 1.91409 1.73080 1.66827 1.81909 1.20972 1.07789 1.07562 0.92825 1.19009 0.91337 0.91553 0.85485 1.84022 1.57084 1.51104 1.13180 1.21323 1.19614 1.16702 0.89679 0.89040 1.25277 0.97822 0.97593 0.95424 1.70049 1.37082 1.33456 1.07796 0.85805 0.79732 0.79733 0.78363 1.19460 1.20243 1.19370 1.23961 0.93794 0.97050 0.94736 1.77160 1.25253 0.96895 1.13041 0.91082 0.91244 0.92263 0.90268 0.89225 0.81535 0.86118 0.86410 0.84360 0.91835 0.80092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.09 37.16 0.37 -1.26 16 2 C 0.14 1.53 7.22 -4.04 -0.03 1.50 16 3 N -0.38 -6.27 3.67 -61.08 -0.22 -6.49 16 4 C 0.05 0.76 11.32 -16.84 -0.19 0.57 16 5 C -0.16 -3.18 5.31 -105.35 -0.56 -3.74 16 6 C -0.09 -1.87 5.77 -104.70 -0.60 -2.47 16 7 C -0.04 -0.74 9.69 -39.30 -0.38 -1.12 16 8 C -0.25 -4.31 10.01 -39.52 -0.40 -4.70 16 9 C 0.14 2.70 7.29 -39.40 -0.29 2.41 16 10 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 11 C -0.27 -5.94 9.14 -39.37 -0.36 -6.30 16 12 C 0.18 4.26 6.63 -38.78 -0.26 4.00 16 13 O -0.15 -4.12 8.67 0.28 0.00 -4.12 16 14 C -0.40 -10.72 9.49 30.88 0.29 -10.42 16 15 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 16 C 0.04 1.19 5.49 -17.52 -0.10 1.10 16 17 N -0.85 -24.15 13.67 55.48 0.76 -23.39 16 18 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 C 0.09 1.93 11.32 -17.05 -0.19 1.73 16 23 N -0.30 -6.04 12.38 30.81 0.38 -5.66 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.14 3.06 5.64 -52.48 -0.30 2.77 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.18 3.94 8.06 -52.49 -0.42 3.52 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -30.85 307.31 -5.63 -36.47 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.51 Total: 5.01 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.68 Total: -18.71 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.92 Total: -35.55 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.00 Total: -4.12 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.85 -5.63 -36.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240648878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.077 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds