Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47042 * 2 1 4 4 N 1.40079 * 126.13977 * 265.00278 * 3 2 1 5 5 C 1.30898 * 108.52952 * 179.97438 * 4 3 2 6 6 C 1.39478 * 108.60846 * 359.74471 * 5 4 3 7 7 C 1.36328 * 126.14449 * 85.00598 * 3 2 1 8 8 C 1.47842 * 126.35037 * 359.97438 * 7 3 2 9 9 C 1.39475 * 120.14772 * 49.63691 * 8 7 3 10 10 C 1.37922 * 119.95229 * 180.02562 * 9 8 7 11 11 C 1.38710 * 120.26179 * 359.97438 * 10 9 8 12 12 F 1.35095 * 119.84456 * 179.97438 * 11 10 9 13 13 C 1.38348 * 120.31166 * 359.97438 * 11 10 9 14 14 C 1.38683 * 120.03732 * 0.02990 * 13 11 10 15 15 O 1.35650 * 120.12717 * 179.97438 * 14 13 11 16 16 C 1.34809 * 116.99929 * 354.34337 * 15 14 13 17 17 H 1.07997 * 120.00022 * 5.06992 * 16 15 14 18 18 C 1.38638 * 119.99980 * 185.07264 * 16 15 14 19 19 N 1.31571 * 119.99557 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47432 * 59.99996 * 20 18 16 22 22 H 1.48507 * 109.47115 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47438 * 299.99730 * 20 18 16 24 24 H 1.09002 * 109.46898 * 60.00363 * 1 2 3 25 25 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47136 * 300.00107 * 1 2 3 27 27 H 1.08998 * 109.47268 * 239.99364 * 2 1 3 28 28 H 1.09004 * 109.47303 * 119.99315 * 2 1 3 29 29 H 1.07999 * 125.69435 * 180.02562 * 5 4 3 30 30 H 1.08005 * 126.08012 * 180.30806 * 6 5 4 31 31 H 1.08001 * 120.02792 * 0.02837 * 9 8 7 32 32 H 1.07998 * 119.86528 * 180.26139 * 10 9 8 33 33 H 1.07995 * 119.97863 * 180.02562 * 13 11 10 34 34 H 0.97003 * 119.99653 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3865 2.1273 -1.1270 5 6 2.7693 3.3152 -0.7325 6 6 2.6570 3.3807 0.6562 7 6 2.1959 2.1713 1.0967 8 6 1.9315 1.7931 2.5013 9 6 2.4400 0.5994 3.0129 10 6 2.1904 0.2503 4.3237 11 6 1.4352 1.0823 5.1370 12 9 1.1954 0.7319 6.4195 13 6 0.9264 2.2694 4.6411 14 6 1.1696 2.6328 3.3250 15 8 0.6711 3.7961 2.8366 16 6 -0.1494 4.4972 3.6444 17 1 -0.3178 4.1691 4.6594 18 6 -0.7772 5.6395 3.1720 19 7 -0.5716 6.0395 1.9355 20 14 -1.9135 6.6114 4.2914 21 1 -1.1551 7.0834 5.4777 22 1 -2.4554 7.7802 3.5526 23 1 -3.0341 5.7432 4.7338 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.1105 4.1131 -1.3754 30 1 2.8944 4.2342 1.2740 31 1 3.0288 -0.0512 2.3832 32 1 2.5883 -0.6723 4.7196 33 1 0.3395 2.9133 5.2792 34 1 -1.0111 6.8385 1.6049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240700078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = 27.564496 kcal Electronic energy + Delta-G solvation = -21152.367668 eV Core-core repulsion = 17774.369876 eV Total energy + Delta-G solvation = -3377.997793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.42333 -40.55350 -38.95201 -36.48366 -34.04564 -32.50921 -31.37835 -29.51743 -28.89545 -27.68453 -25.57992 -23.58483 -22.29563 -22.02015 -20.24943 -19.41772 -18.42121 -17.49033 -16.71949 -15.51022 -15.35487 -15.12902 -14.81175 -14.44024 -14.31504 -14.15626 -13.68976 -13.52689 -13.42734 -13.12540 -12.67876 -12.36270 -12.04863 -11.83164 -11.77146 -11.46127 -11.27272 -11.02988 -10.87961 -10.79974 -10.57765 -10.10049 -9.73921 -9.01956 -8.90182 -8.24522 -7.88558 -7.31604 -6.62435 -4.22160 1.50026 2.00886 2.54487 3.03886 3.04766 3.06332 3.08726 3.55131 3.81588 4.21820 4.69873 4.86566 4.91434 5.01935 5.12971 5.24872 5.34573 5.46066 5.53012 5.60491 5.75983 5.88283 5.98359 6.21678 6.31185 6.33089 6.36156 6.63396 6.68147 6.74430 6.81314 6.96760 7.14129 7.33193 7.47357 7.62700 7.79482 8.32315 8.80078 9.43025 10.52247 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.008035 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.497724 B = 3483.800820 C = 5036.445838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.375 5.375 4 N -0.312 5.312 5 C 0.044 3.956 6 C -0.235 4.235 7 C 0.154 3.846 8 C -0.129 4.129 9 C -0.032 4.032 10 C -0.250 4.250 11 C 0.152 3.848 12 F -0.149 7.149 13 C -0.269 4.269 14 C 0.194 3.806 15 O -0.142 6.142 16 C -0.401 4.401 17 H 0.095 0.905 18 C 0.047 3.953 19 N -0.842 5.842 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.268 1.268 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.176 0.824 30 H 0.146 0.854 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -8.408 0.122 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.010 3.990 3 N -0.159 5.159 4 N -0.133 5.133 5 C -0.141 4.141 6 C -0.263 4.263 7 C 0.029 3.971 8 C -0.133 4.133 9 C -0.051 4.051 10 C -0.270 4.270 11 C 0.132 3.868 12 F -0.128 7.128 13 C -0.290 4.290 14 C 0.136 3.864 15 O -0.042 6.042 16 C -0.476 4.476 17 H 0.112 0.888 18 C -0.160 4.160 19 N -0.474 5.474 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.193 1.193 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.193 0.807 30 H 0.163 0.837 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.008 -8.958 -1.269 9.534 hybrid contribution -0.607 1.034 1.588 1.990 sum 2.401 -7.924 0.320 8.286 Atomic orbital electron populations 1.22166 0.94625 1.02341 1.03649 1.21564 0.95212 0.78743 1.03454 1.48874 1.52025 1.11629 1.03412 1.77142 1.22222 1.05800 1.08151 1.23559 1.00109 0.95148 0.95239 1.21381 1.12284 0.98072 0.94607 1.19237 0.99395 0.91520 0.86988 1.17051 1.08862 0.97126 0.90263 1.20505 0.96364 0.93985 0.94217 1.20395 1.09049 1.02566 0.94993 1.17536 0.97050 0.94094 0.78089 1.91427 1.92846 1.92077 1.36429 1.20976 1.11235 0.99324 0.97421 1.18844 0.91140 0.86380 0.90072 1.84040 1.53397 1.25543 1.41184 1.21382 1.23668 1.07127 0.95437 0.88781 1.25334 0.97423 0.96534 0.96741 1.70054 1.39698 1.23149 1.14466 0.85773 0.79625 0.78913 0.79186 1.19218 1.20054 1.19324 0.91930 0.91096 0.91472 0.89361 0.89398 0.80684 0.83663 0.86042 0.85944 0.83923 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 37.15 0.38 -2.02 16 2 C 0.13 1.88 6.91 -4.04 -0.03 1.85 16 3 N -0.37 -6.97 3.66 -57.42 -0.21 -7.18 16 4 N -0.31 -6.06 12.56 30.55 0.38 -5.68 16 5 C 0.04 0.83 11.98 -17.49 -0.21 0.62 16 6 C -0.23 -4.92 9.98 -39.67 -0.40 -5.32 16 7 C 0.15 3.15 6.17 -82.49 -0.51 2.64 16 8 C -0.13 -2.59 5.57 -104.79 -0.58 -3.18 16 9 C -0.03 -0.52 8.59 -39.24 -0.34 -0.86 16 10 C -0.25 -4.10 10.01 -39.52 -0.40 -4.49 16 11 C 0.15 2.81 7.30 -39.37 -0.29 2.52 16 12 F -0.15 -2.66 17.26 2.25 0.04 -2.62 16 13 C -0.27 -5.61 9.13 -39.38 -0.36 -5.97 16 14 C 0.19 4.40 6.63 -38.70 -0.26 4.14 16 15 O -0.14 -3.74 8.62 0.42 0.00 -3.74 16 16 C -0.40 -10.48 9.48 30.88 0.29 -10.19 16 17 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 18 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 19 N -0.84 -23.28 13.67 55.48 0.76 -22.52 16 20 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.10 5.67 -51.93 -0.29 0.81 16 29 H 0.18 2.69 8.06 -52.49 -0.42 2.27 16 30 H 0.15 3.15 8.06 -52.48 -0.42 2.73 16 31 H 0.12 1.68 6.90 -52.49 -0.36 1.31 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.14 2.98 5.64 -52.49 -0.30 2.69 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -29.49 302.59 -5.59 -35.08 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.32 Total: 6.74 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.79 Total: -19.13 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.93 Total: -35.38 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: 0.00 Total: -3.74 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.49 -5.59 -35.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240700078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.647 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds