Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47042 * 2 1 4 4 N 1.40079 * 126.13977 * 265.00278 * 3 2 1 5 5 C 1.30898 * 108.52952 * 179.97438 * 4 3 2 6 6 C 1.39478 * 108.60846 * 359.74471 * 5 4 3 7 7 C 1.36328 * 126.14449 * 85.00598 * 3 2 1 8 8 C 1.47842 * 126.35037 * 359.97438 * 7 3 2 9 9 C 1.39475 * 120.14772 * 49.63691 * 8 7 3 10 10 C 1.37922 * 119.95229 * 180.02562 * 9 8 7 11 11 C 1.38710 * 120.26179 * 359.97438 * 10 9 8 12 12 F 1.35095 * 119.84456 * 179.97438 * 11 10 9 13 13 C 1.38348 * 120.31166 * 359.97438 * 11 10 9 14 14 C 1.38683 * 120.03732 * 0.02990 * 13 11 10 15 15 O 1.35650 * 120.12717 * 179.97438 * 14 13 11 16 16 C 1.34809 * 116.99929 * 354.34337 * 15 14 13 17 17 H 1.07997 * 120.00022 * 5.06992 * 16 15 14 18 18 C 1.38638 * 119.99980 * 185.07264 * 16 15 14 19 19 N 1.31571 * 119.99557 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47432 * 59.99996 * 20 18 16 22 22 H 1.48507 * 109.47115 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47438 * 299.99730 * 20 18 16 24 24 H 1.09002 * 109.46898 * 60.00363 * 1 2 3 25 25 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47136 * 300.00107 * 1 2 3 27 27 H 1.08998 * 109.47268 * 239.99364 * 2 1 3 28 28 H 1.09004 * 109.47303 * 119.99315 * 2 1 3 29 29 H 1.07999 * 125.69435 * 180.02562 * 5 4 3 30 30 H 1.08005 * 126.08012 * 180.30806 * 6 5 4 31 31 H 1.08001 * 120.02792 * 0.02837 * 9 8 7 32 32 H 1.07998 * 119.86528 * 180.26139 * 10 9 8 33 33 H 1.07995 * 119.97863 * 180.02562 * 13 11 10 34 34 H 0.97003 * 119.99653 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3865 2.1273 -1.1270 5 6 2.7693 3.3152 -0.7325 6 6 2.6570 3.3807 0.6562 7 6 2.1959 2.1713 1.0967 8 6 1.9315 1.7931 2.5013 9 6 2.4400 0.5994 3.0129 10 6 2.1904 0.2503 4.3237 11 6 1.4352 1.0823 5.1370 12 9 1.1954 0.7319 6.4195 13 6 0.9264 2.2694 4.6411 14 6 1.1696 2.6328 3.3250 15 8 0.6711 3.7961 2.8366 16 6 -0.1494 4.4972 3.6444 17 1 -0.3178 4.1691 4.6594 18 6 -0.7772 5.6395 3.1720 19 7 -0.5716 6.0395 1.9355 20 14 -1.9135 6.6114 4.2914 21 1 -1.1551 7.0834 5.4777 22 1 -2.4554 7.7802 3.5526 23 1 -3.0341 5.7432 4.7338 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.1105 4.1131 -1.3754 30 1 2.8944 4.2342 1.2740 31 1 3.0288 -0.0512 2.3832 32 1 2.5883 -0.6723 4.7196 33 1 0.3395 2.9133 5.2792 34 1 -1.0111 6.8385 1.6049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240700078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = 10.430794 kcal Electronic energy + Delta-G solvation = -21153.110642 eV Core-core repulsion = 17774.369876 eV Total energy + Delta-G solvation = -3378.740766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89870 -42.06286 -40.61011 -38.11686 -35.33222 -34.36507 -32.91735 -31.09282 -30.25729 -29.25813 -27.43254 -24.89922 -23.78262 -23.62699 -21.74384 -20.89305 -20.15694 -19.14083 -18.18187 -17.13777 -16.99621 -16.62712 -16.20154 -16.00985 -15.81446 -15.55077 -15.38670 -15.03987 -15.00368 -14.56139 -14.18390 -13.90099 -13.51514 -13.30728 -13.10238 -13.00183 -12.83114 -12.43313 -12.35214 -12.19991 -12.12285 -11.67008 -11.50205 -10.84475 -10.40448 -9.73986 -9.46264 -8.93689 -8.50694 -6.19686 -0.04913 0.47777 1.01746 1.34275 1.43430 1.49145 1.67483 1.98620 2.12840 2.63815 3.03423 3.17553 3.40276 3.60754 3.70831 3.90757 4.11000 4.16312 4.18311 4.32459 4.36852 4.60572 4.66786 4.77677 4.83553 4.93506 5.00055 5.10268 5.17524 5.21333 5.22789 5.30243 5.50774 5.80619 5.91082 5.95311 6.19967 6.80779 6.91470 7.64507 8.68623 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.008035 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.497724 B = 3483.800820 C = 5036.445838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.120 3.880 3 N -0.370 5.370 4 N -0.320 5.320 5 C 0.042 3.958 6 C -0.264 4.264 7 C 0.143 3.857 8 C -0.133 4.133 9 C -0.019 4.019 10 C -0.215 4.215 11 C 0.149 3.851 12 F -0.142 7.142 13 C -0.282 4.282 14 C 0.169 3.831 15 O -0.190 6.190 16 C -0.422 4.422 17 H 0.102 0.898 18 C -0.009 4.009 19 N -0.899 5.899 20 Si 1.011 2.989 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.260 1.260 24 H 0.045 0.955 25 H 0.111 0.889 26 H 0.034 0.966 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.204 0.796 30 H 0.123 0.877 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.132 0.868 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.050 -11.587 0.919 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.001 3.999 3 N -0.155 5.155 4 N -0.142 5.142 5 C -0.142 4.142 6 C -0.293 4.293 7 C 0.017 3.983 8 C -0.137 4.137 9 C -0.037 4.037 10 C -0.234 4.234 11 C 0.130 3.870 12 F -0.121 7.121 13 C -0.302 4.302 14 C 0.114 3.886 15 O -0.093 6.093 16 C -0.498 4.498 17 H 0.119 0.881 18 C -0.209 4.209 19 N -0.535 5.535 20 Si 0.830 3.170 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.184 1.184 24 H 0.064 0.936 25 H 0.129 0.871 26 H 0.053 0.947 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.220 0.780 30 H 0.142 0.858 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.150 0.850 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.775 -12.208 -0.448 12.786 hybrid contribution -0.677 1.668 1.401 2.281 sum 3.098 -10.539 0.952 11.026 Atomic orbital electron populations 1.22137 0.94731 1.04175 1.01166 1.22039 0.95097 0.76799 1.05995 1.49213 1.51134 1.12776 1.02395 1.77086 1.22391 1.06019 1.08723 1.23962 0.99671 0.95838 0.94719 1.21427 1.14057 0.98151 0.95687 1.19330 0.99318 0.91887 0.87786 1.17369 1.08345 0.97930 0.90051 1.20950 0.95274 0.92701 0.94819 1.20921 1.05663 1.02826 0.94037 1.17633 0.97161 0.93575 0.78673 1.91450 1.92799 1.91826 1.35992 1.21009 1.11786 1.00540 0.96876 1.19358 0.91675 0.86342 0.91234 1.84037 1.55526 1.27562 1.42159 1.21785 1.24258 1.07784 0.95980 0.88100 1.26463 0.98862 0.97383 0.98218 1.70195 1.42230 1.24304 1.16737 0.84759 0.77571 0.77369 0.77302 1.18109 1.19585 1.18401 0.93621 0.87061 0.94695 0.86700 0.86901 0.77968 0.85850 0.81904 0.81385 0.85019 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 10.24 71.98 0.74 -3.58 16 2 C 0.12 3.05 6.91 86.38 0.60 3.65 16 3 N -0.37 -13.29 3.66 -335.59 -1.23 -14.52 16 4 N -0.32 -12.24 12.56 -57.25 -0.72 -12.96 16 5 C 0.04 1.61 11.98 85.13 1.02 2.63 16 6 C -0.26 -11.53 9.98 22.21 0.22 -11.30 16 7 C 0.14 5.87 6.17 40.63 0.25 6.12 16 8 C -0.13 -5.24 5.57 -19.97 -0.11 -5.36 16 9 C -0.02 -0.55 8.59 22.49 0.19 -0.36 16 10 C -0.22 -5.97 10.01 22.31 0.22 -5.74 16 11 C 0.15 5.13 7.30 22.41 0.16 5.29 16 12 F -0.14 -4.64 17.26 44.97 0.78 -3.86 16 13 C -0.28 -11.79 9.13 22.40 0.20 -11.59 16 14 C 0.17 7.84 6.63 22.84 0.15 8.00 16 15 O -0.19 -10.63 8.62 -21.42 -0.18 -10.82 16 16 C -0.42 -23.38 9.48 67.92 0.64 -22.74 16 17 H 0.10 5.16 5.21 -2.91 -0.02 5.14 16 18 C -0.01 -0.47 5.49 84.83 0.47 -0.01 16 19 N -0.90 -52.93 13.67 21.61 0.30 -52.64 16 20 Si 1.01 41.47 29.55 68.60 2.03 43.50 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.11 2.27 5.67 -2.38 -0.01 2.26 16 29 H 0.20 6.24 8.06 -2.91 -0.02 6.22 16 30 H 0.12 5.81 8.06 -2.91 -0.02 5.79 16 31 H 0.16 3.47 6.90 -2.91 -0.02 3.45 16 32 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.13 5.70 5.64 -2.91 -0.02 5.69 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -69.14 302.59 6.87 -62.28 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.14 Total: 24.02 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 4.76 Total: -35.00 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -1.65 Total: -80.12 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.18 Total: -10.82 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.78 Total: -3.86 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -69.14 6.87 -62.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240700078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.706 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds