Wall clock time and date at job start Mon Mar 30 2020 01:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00324 * 2 1 4 4 N 1.46497 * 109.47421 * 180.02562 * 3 2 1 5 5 C 1.34842 * 125.89719 * 359.97438 * 4 3 2 6 6 C 1.36426 * 107.60857 * 180.02562 * 5 4 3 7 7 C 1.48500 * 126.21789 * 180.02562 * 6 5 4 8 8 C 1.39786 * 119.96241 * 359.97438 * 7 6 5 9 9 C 1.38251 * 120.42316 * 179.97438 * 8 7 6 10 10 C 1.38050 * 120.34239 * 0.02562 * 9 8 7 11 11 F 1.35104 * 120.04477 * 180.02562 * 10 9 8 12 12 C 1.41029 * 119.90987 * 0.02562 * 10 9 8 13 13 C 1.41316 * 120.20925 * 179.97438 * 12 10 9 14 14 H 1.07993 * 120.00090 * 335.36894 * 13 12 10 15 15 C 1.39918 * 119.99898 * 155.64736 * 13 12 10 16 16 N 1.30852 * 119.99842 * 342.07875 * 15 13 12 17 17 Si 1.86800 * 119.99825 * 162.08272 * 15 13 12 18 18 H 1.48502 * 109.47082 * 59.99900 * 17 15 13 19 19 H 1.48504 * 109.46759 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47188 * 299.99452 * 17 15 13 21 21 C 1.38610 * 119.95568 * 180.27898 * 7 6 5 22 22 C 1.40839 * 107.55977 * 0.26331 * 6 5 4 23 23 N 1.30677 * 108.09957 * 359.55545 * 22 6 5 24 24 H 1.09002 * 109.47328 * 59.99811 * 1 2 3 25 25 H 1.08996 * 109.47184 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46979 * 299.99856 * 1 2 3 27 27 H 1.08998 * 109.47087 * 59.99651 * 3 2 1 28 28 H 1.09006 * 109.46845 * 299.99851 * 3 2 1 29 29 H 1.08000 * 126.19354 * 0.02562 * 5 4 3 30 30 H 1.07995 * 119.78563 * 0.02562 * 8 7 6 31 31 H 1.08005 * 119.82867 * 180.02562 * 9 8 7 32 32 H 0.97005 * 119.99679 * 179.97438 * 16 15 13 33 33 H 1.07994 * 120.17568 * 359.97438 * 21 7 6 34 34 H 1.08001 * 125.94678 * 179.73445 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4706 1.1897 -0.0006 5 6 4.1725 0.0384 -0.0006 6 6 5.4976 0.3629 -0.0007 7 6 6.6348 -0.5921 -0.0013 8 6 6.3906 -1.9685 -0.0013 9 6 7.4422 -2.8660 -0.0023 10 6 8.7461 -2.4126 -0.0029 11 9 9.7691 -3.2951 -0.0045 12 6 9.0088 -1.0270 -0.0019 13 6 10.3411 -0.5559 -0.0019 14 1 11.1337 -1.1777 0.3871 15 6 10.6325 0.7185 -0.5006 16 7 9.7724 1.3310 -1.2734 17 14 12.2494 1.5454 -0.0632 18 1 13.3788 0.7069 -0.5392 19 1 12.3151 2.8789 -0.7133 20 1 12.3398 1.7075 1.4102 21 6 7.9371 -0.1176 0.0045 22 6 5.5910 1.7682 0.0054 23 7 4.3785 2.2556 -0.0007 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.7603 -0.9598 -0.0006 30 1 5.3741 -2.3330 -0.0012 31 1 7.2425 -3.9275 -0.0027 32 1 9.9742 2.2147 -1.6189 33 1 8.1275 0.9455 0.0091 34 1 6.5054 2.3428 0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245220144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:26 Heat of formation + Delta-G solvation = 8.896001 kcal Electronic energy + Delta-G solvation = -20241.577930 eV Core-core repulsion = 16862.770611 eV Total energy + Delta-G solvation = -3378.807320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.15692 -40.77340 -38.22935 -37.15699 -33.82880 -32.38104 -30.78735 -29.66569 -28.19310 -27.07015 -25.29193 -25.07783 -21.77101 -21.45892 -20.08021 -19.43894 -17.54571 -17.03749 -16.62267 -16.35711 -15.96675 -15.17701 -14.63833 -14.44704 -14.34662 -14.01087 -13.92432 -13.37891 -12.70787 -12.68067 -12.51317 -12.42715 -11.87053 -11.67552 -11.57404 -11.39873 -11.02625 -10.92460 -10.51256 -10.39328 -10.32195 -9.87917 -9.45381 -9.25859 -9.05477 -8.50865 -7.55598 -6.89106 -6.62515 -4.39497 2.07164 2.25817 2.55815 2.79566 3.07153 3.10007 3.15998 3.63200 3.68072 3.92273 4.63698 4.69403 4.83927 4.86716 5.00228 5.18169 5.25499 5.41370 5.56348 5.91628 5.97778 6.02522 6.25376 6.32454 6.51976 6.54728 6.93667 7.05692 7.14930 7.19329 7.33437 7.55442 7.62587 7.93429 7.99824 8.07798 8.16580 8.54265 8.75225 8.85384 10.13011 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.004654 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.118096 B = 6014.864294 C = 7186.261045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.399 6.399 3 C 0.323 3.677 4 N -0.392 5.392 5 C 0.069 3.931 6 C -0.167 4.167 7 C -0.005 4.005 8 C -0.212 4.212 9 C -0.120 4.120 10 C -0.034 4.034 11 F -0.165 7.165 12 C 0.089 3.911 13 C -0.455 4.455 14 H 0.082 0.918 15 C 0.078 3.922 16 N -0.789 5.789 17 Si 0.911 3.089 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.134 4.134 22 C 0.073 3.927 23 N -0.304 5.304 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.174 0.826 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.283 0.717 33 H 0.129 0.871 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 1.845 1.725 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.317 6.317 3 C 0.162 3.838 4 N -0.176 5.176 5 C -0.076 4.076 6 C -0.178 4.178 7 C -0.006 4.006 8 C -0.231 4.231 9 C -0.139 4.139 10 C -0.054 4.054 11 F -0.144 7.144 12 C 0.086 3.914 13 C -0.484 4.484 14 H 0.100 0.900 15 C -0.140 4.140 16 N -0.413 5.413 17 Si 0.735 3.265 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.154 4.154 22 C -0.113 4.113 23 N -0.125 5.125 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.191 0.809 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.753 2.938 1.567 15.124 hybrid contribution 1.100 -0.355 0.028 1.156 sum -13.654 2.583 1.595 13.987 Atomic orbital electron populations 1.22763 0.78203 1.03825 1.00631 1.87741 1.21423 1.26902 1.95599 1.21816 0.75772 0.84693 1.01506 1.48250 1.04864 1.04968 1.59510 1.22404 0.91574 0.92011 1.01564 1.19188 0.92311 0.93060 1.13225 1.17809 0.90940 0.90930 1.00942 1.20098 0.96401 0.91834 1.14811 1.20373 0.91595 0.98181 1.03758 1.17899 0.83155 0.87183 1.17154 1.91262 1.59499 1.68406 1.95270 1.17512 0.94496 0.88788 0.90648 1.19469 0.93690 0.99690 1.35565 0.89995 1.25882 0.98889 0.96852 0.92423 1.69819 1.35833 1.13844 1.21836 0.86318 0.81741 0.78406 0.80058 1.18924 1.20212 1.18682 1.21145 0.89277 0.99878 1.05079 1.24119 0.95295 0.94257 0.97638 1.77174 0.98740 1.09613 1.26983 0.93300 0.88517 0.93319 0.90948 0.90953 0.80893 0.88595 0.88154 0.90572 0.85359 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 11.01 101.05 1.11 1.39 16 2 O -0.40 -4.44 9.84 -35.23 -0.35 -4.78 16 3 C 0.32 3.77 7.65 59.85 0.46 4.23 16 4 N -0.39 -6.43 4.00 -65.89 -0.26 -6.70 16 5 C 0.07 1.22 10.25 -16.88 -0.17 1.05 16 6 C -0.17 -3.39 6.04 -105.34 -0.64 -4.03 16 7 C 0.00 -0.10 5.87 -104.95 -0.62 -0.72 16 8 C -0.21 -4.64 9.57 -39.00 -0.37 -5.01 16 9 C -0.12 -2.75 9.99 -39.65 -0.40 -3.15 16 10 C -0.03 -0.87 7.31 -38.59 -0.28 -1.15 16 11 F -0.17 -4.25 16.70 2.25 0.04 -4.21 16 12 C 0.09 2.38 5.58 -106.80 -0.60 1.78 16 13 C -0.46 -12.20 8.78 -37.78 -0.33 -12.53 16 14 H 0.08 2.18 7.73 -52.49 -0.41 1.77 16 15 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 16 N -0.79 -19.71 10.97 55.55 0.61 -19.11 16 17 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 C -0.13 -3.37 8.21 -38.57 -0.32 -3.69 16 22 C 0.07 1.41 11.41 -17.06 -0.19 1.22 16 23 N -0.30 -5.53 12.54 30.80 0.39 -5.15 16 24 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.17 2.75 6.98 -52.49 -0.37 2.39 16 30 H 0.10 1.82 6.99 -52.49 -0.37 1.45 16 31 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 32 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 33 H 0.13 3.22 5.14 -52.49 -0.27 2.95 16 34 H 0.19 3.44 7.33 -52.49 -0.38 3.05 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -29.97 302.98 -5.94 -35.91 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -3.46 Total: 4.73 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.43 Total: -18.77 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.73 Total: -30.95 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.35 Total: -4.78 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.97 -5.94 -35.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245220144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.806 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds