Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00324 * 2 1 4 4 N 1.46497 * 109.47421 * 180.02562 * 3 2 1 5 5 C 1.34842 * 125.89719 * 359.97438 * 4 3 2 6 6 C 1.36426 * 107.60857 * 180.02562 * 5 4 3 7 7 C 1.48500 * 126.21789 * 180.02562 * 6 5 4 8 8 C 1.39786 * 119.96241 * 359.97438 * 7 6 5 9 9 C 1.38251 * 120.42316 * 179.97438 * 8 7 6 10 10 C 1.38050 * 120.34239 * 0.02562 * 9 8 7 11 11 F 1.35104 * 120.04477 * 180.02562 * 10 9 8 12 12 C 1.41029 * 119.90987 * 0.02562 * 10 9 8 13 13 C 1.41316 * 120.20925 * 179.97438 * 12 10 9 14 14 H 1.07993 * 120.00090 * 335.36894 * 13 12 10 15 15 C 1.39918 * 119.99898 * 155.64736 * 13 12 10 16 16 N 1.30852 * 119.99842 * 342.07875 * 15 13 12 17 17 Si 1.86800 * 119.99825 * 162.08272 * 15 13 12 18 18 H 1.48502 * 109.47082 * 59.99900 * 17 15 13 19 19 H 1.48504 * 109.46759 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47188 * 299.99452 * 17 15 13 21 21 C 1.38610 * 119.95568 * 180.27898 * 7 6 5 22 22 C 1.40839 * 107.55977 * 0.26331 * 6 5 4 23 23 N 1.30677 * 108.09957 * 359.55545 * 22 6 5 24 24 H 1.09002 * 109.47328 * 59.99811 * 1 2 3 25 25 H 1.08996 * 109.47184 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46979 * 299.99856 * 1 2 3 27 27 H 1.08998 * 109.47087 * 59.99651 * 3 2 1 28 28 H 1.09006 * 109.46845 * 299.99851 * 3 2 1 29 29 H 1.08000 * 126.19354 * 0.02562 * 5 4 3 30 30 H 1.07995 * 119.78563 * 0.02562 * 8 7 6 31 31 H 1.08005 * 119.82867 * 180.02562 * 9 8 7 32 32 H 0.97005 * 119.99679 * 179.97438 * 16 15 13 33 33 H 1.07994 * 120.17568 * 359.97438 * 21 7 6 34 34 H 1.08001 * 125.94678 * 179.73445 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4706 1.1897 -0.0006 5 6 4.1725 0.0384 -0.0006 6 6 5.4976 0.3629 -0.0007 7 6 6.6348 -0.5921 -0.0013 8 6 6.3906 -1.9685 -0.0013 9 6 7.4422 -2.8660 -0.0023 10 6 8.7461 -2.4126 -0.0029 11 9 9.7691 -3.2951 -0.0045 12 6 9.0088 -1.0270 -0.0019 13 6 10.3411 -0.5559 -0.0019 14 1 11.1337 -1.1777 0.3871 15 6 10.6325 0.7185 -0.5006 16 7 9.7724 1.3310 -1.2734 17 14 12.2494 1.5454 -0.0632 18 1 13.3788 0.7069 -0.5392 19 1 12.3151 2.8789 -0.7133 20 1 12.3398 1.7075 1.4102 21 6 7.9371 -0.1176 0.0045 22 6 5.5910 1.7682 0.0054 23 7 4.3785 2.2556 -0.0007 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.7603 -0.9598 -0.0006 30 1 5.3741 -2.3330 -0.0012 31 1 7.2425 -3.9275 -0.0027 32 1 9.9742 2.2147 -1.6189 33 1 8.1275 0.9455 0.0091 34 1 6.5054 2.3428 0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245220144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = -9.328370 kcal Electronic energy + Delta-G solvation = -20242.368198 eV Core-core repulsion = 16862.770611 eV Total energy + Delta-G solvation = -3379.597588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.12867 -42.16034 -39.20276 -38.79285 -35.68063 -33.69185 -32.39150 -31.50039 -29.63112 -27.88227 -27.17133 -26.14121 -23.51804 -23.07869 -21.52493 -21.05087 -19.18661 -18.43507 -17.83416 -17.46954 -17.31333 -16.92678 -16.28785 -15.91618 -15.77912 -15.51782 -15.51027 -14.58631 -14.31736 -14.19926 -13.99550 -13.60341 -13.47196 -13.31875 -13.20498 -12.70296 -12.64336 -12.44016 -12.14639 -12.01504 -11.58528 -11.28388 -11.14923 -11.05688 -10.38649 -10.10454 -9.45064 -8.71650 -8.35719 -6.37191 0.47861 0.96945 1.00226 1.19489 1.39631 1.48784 1.52629 2.02529 2.22286 2.74900 2.79826 3.66301 3.71032 3.96577 4.01275 4.08120 4.13666 4.30324 4.46194 4.51175 4.54165 4.67337 4.79637 4.82120 4.86799 5.07189 5.23689 5.40093 5.43840 5.65916 5.78754 5.87549 6.02647 6.09057 6.13077 6.24326 6.60808 6.73530 6.82683 6.94083 8.30385 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.004654 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.118096 B = 6014.864294 C = 7186.261045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.420 6.420 3 C 0.314 3.686 4 N -0.384 5.384 5 C 0.090 3.910 6 C -0.204 4.204 7 C 0.001 3.999 8 C -0.206 4.206 9 C -0.116 4.116 10 C -0.072 4.072 11 F -0.173 7.173 12 C 0.060 3.940 13 C -0.498 4.498 14 H 0.068 0.932 15 C 0.043 3.957 16 N -0.812 5.812 17 Si 0.981 3.019 18 H -0.265 1.265 19 H -0.260 1.260 20 H -0.260 1.260 21 C -0.156 4.156 22 C 0.062 3.938 23 N -0.308 5.308 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.196 0.804 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.293 0.707 33 H 0.120 0.880 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 2.240 1.805 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.338 6.338 3 C 0.155 3.845 4 N -0.167 5.167 5 C -0.057 4.057 6 C -0.215 4.215 7 C -0.001 4.001 8 C -0.225 4.225 9 C -0.135 4.135 10 C -0.092 4.092 11 F -0.153 7.153 12 C 0.058 3.942 13 C -0.527 4.527 14 H 0.086 0.914 15 C -0.173 4.173 16 N -0.437 5.437 17 Si 0.801 3.199 18 H -0.189 1.189 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.176 4.176 22 C -0.123 4.123 23 N -0.131 5.131 24 H 0.081 0.919 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.213 0.787 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.264 3.342 1.643 17.661 hybrid contribution 1.560 -0.509 -0.010 1.641 sum -15.703 2.833 1.633 16.040 Atomic orbital electron populations 1.23045 0.75807 1.05126 1.02084 1.87713 1.23873 1.26387 1.95862 1.22234 0.73008 0.85697 1.03520 1.48686 1.06683 1.04089 1.57250 1.22638 0.90691 0.93286 0.99063 1.19126 0.92714 0.93051 1.16640 1.18089 0.90990 0.92197 0.98789 1.20530 0.97906 0.91220 1.12862 1.20717 0.90517 1.00022 1.02230 1.18262 0.84276 0.87114 1.19590 1.91220 1.60063 1.68421 1.95562 1.17879 0.95210 0.89829 0.91330 1.19628 0.93743 1.01365 1.37958 0.91361 1.26641 1.02450 0.96591 0.91638 1.69846 1.37507 1.14391 1.21974 0.85278 0.77058 0.77764 0.79801 1.18928 1.18417 1.18413 1.21128 0.90184 0.99328 1.06920 1.24116 0.95824 0.94170 0.98237 1.77124 0.98566 1.10309 1.27071 0.91894 0.87361 0.91816 0.88797 0.88981 0.78682 0.84852 0.85216 0.89657 0.86265 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -7.80 9.84 -148.98 -1.47 -9.26 16 3 C 0.31 6.21 7.65 127.77 0.98 7.19 16 4 N -0.38 -11.57 4.00 -462.85 -1.85 -13.42 16 5 C 0.09 2.96 10.25 83.81 0.86 3.82 16 6 C -0.20 -8.11 6.04 -20.33 -0.12 -8.23 16 7 C 0.00 0.04 5.87 -20.08 -0.12 -0.07 16 8 C -0.21 -8.69 9.57 22.65 0.22 -8.47 16 9 C -0.12 -5.24 9.99 22.23 0.22 -5.02 16 10 C -0.07 -3.84 7.31 22.91 0.17 -3.67 16 11 F -0.17 -9.24 16.70 44.97 0.75 -8.49 16 12 C 0.06 3.38 5.58 -21.27 -0.12 3.27 16 13 C -0.50 -28.05 8.78 23.43 0.21 -27.84 16 14 H 0.07 3.86 7.73 -2.91 -0.02 3.84 16 15 C 0.04 2.20 5.13 85.25 0.44 2.64 16 16 N -0.81 -41.77 10.97 21.82 0.24 -41.53 16 17 Si 0.98 38.74 29.59 68.60 2.03 40.77 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 C -0.16 -8.11 8.21 22.92 0.19 -7.92 16 22 C 0.06 2.39 11.41 85.50 0.98 3.37 16 23 N -0.31 -10.79 12.54 -56.46 -0.71 -11.50 16 24 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.20 5.44 6.98 -2.91 -0.02 5.42 16 30 H 0.13 4.56 6.99 -2.91 -0.02 4.54 16 31 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 32 H 0.29 13.49 8.30 -92.70 -0.77 12.72 16 33 H 0.12 6.29 5.14 -2.91 -0.01 6.28 16 34 H 0.19 7.01 7.33 -2.91 -0.02 6.99 16 Total: -1.00 -66.66 302.98 5.26 -61.39 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.13 Total: 21.41 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 5.14 Total: -39.38 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -2.32 Total: -66.45 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -1.47 Total: -9.26 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.75 Total: -8.49 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -66.66 5.26 -61.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245220144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.066 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds