Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99756 * 2 1 4 4 N 1.46500 * 109.47513 * 179.97438 * 3 2 1 5 5 C 1.34705 * 125.81298 * 359.97438 * 4 3 2 6 6 C 1.37826 * 107.39632 * 180.02562 * 5 4 3 7 7 C 1.48021 * 126.36597 * 180.02562 * 6 5 4 8 8 C 1.40032 * 119.86126 * 180.02562 * 7 6 5 9 9 C 1.36187 * 120.18019 * 179.97438 * 8 7 6 10 10 C 1.40936 * 119.90102 * 0.02562 * 9 8 7 11 11 C 1.40950 * 120.13704 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00141 * 205.36239 * 11 10 9 13 13 C 1.39928 * 119.99894 * 25.36763 * 11 10 9 14 14 N 1.30869 * 120.00315 * 26.60218 * 13 11 10 15 15 Si 1.86800 * 120.00071 * 206.60173 * 13 11 10 16 16 H 1.48502 * 109.47324 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47509 * 299.99900 * 15 13 11 18 18 H 1.48502 * 109.47250 * 60.00007 * 15 13 11 19 19 C 1.41184 * 119.72918 * 0.26078 * 10 9 8 20 20 F 1.35097 * 120.09452 * 179.74765 * 19 10 9 21 21 C 1.36543 * 119.81178 * 359.48061 * 19 10 9 22 22 C 1.41081 * 107.27109 * 0.26549 * 6 5 4 23 23 N 1.30560 * 108.12244 * 359.55686 * 22 6 5 24 24 H 1.09007 * 109.46754 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47470 * 300.00046 * 1 2 3 26 26 H 1.08994 * 109.46895 * 60.00475 * 1 2 3 27 27 H 1.09002 * 109.47217 * 59.99817 * 3 2 1 28 28 H 1.09000 * 109.47120 * 300.00177 * 3 2 1 29 29 H 1.08004 * 126.30238 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.91023 * 359.97438 * 8 7 6 31 31 H 1.07997 * 120.04862 * 180.02562 * 9 8 7 32 32 H 0.96998 * 119.99623 * 5.88430 * 14 13 11 33 33 H 1.08000 * 119.94815 * 180.25967 * 21 19 10 34 34 H 1.08003 * 125.93971 * 179.73095 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 3.4706 1.1900 0.0006 5 6 4.1703 0.0389 0.0016 6 6 5.5082 0.3698 0.0025 7 6 6.6464 -0.5765 0.0032 8 6 7.9589 -0.0884 0.0046 9 6 9.0110 -0.9532 0.0058 10 6 8.7779 -2.3431 0.0050 11 6 9.8630 -3.2427 0.0057 12 1 9.7398 -4.2378 -0.3954 13 6 11.1000 -2.8463 0.5262 14 7 11.1556 -1.9161 1.4450 15 14 12.6720 -3.6451 -0.0905 16 1 13.8375 -3.0528 0.6138 17 1 12.6224 -5.1053 0.1749 18 1 12.8059 -3.4116 -1.5509 19 6 7.4530 -2.8308 -0.0025 20 9 7.2211 -4.1618 -0.0084 21 6 6.4066 -1.9536 0.0017 22 6 5.5913 1.7782 0.0082 23 7 4.3766 2.2567 0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.7586 -0.9596 0.0017 30 1 8.1374 0.9768 0.0048 31 1 10.0223 -0.5744 0.0073 32 1 10.3372 -1.5619 1.8266 33 1 5.3923 -2.3243 0.0002 34 1 6.5015 2.3595 0.0144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245220223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = 1.815496 kcal Electronic energy + Delta-G solvation = -20094.934848 eV Core-core repulsion = 16715.820495 eV Total energy + Delta-G solvation = -3379.114353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.30496 -40.74804 -38.26246 -37.48971 -34.27161 -32.31806 -30.71140 -29.37655 -28.48723 -27.37571 -25.87732 -24.40131 -21.80112 -21.62073 -19.96030 -19.71698 -18.09988 -17.44364 -16.65562 -16.61396 -15.45724 -14.97291 -14.91160 -14.48680 -14.33349 -14.11828 -13.94514 -13.64005 -13.05189 -12.74302 -12.67511 -12.44090 -12.26653 -11.83278 -11.52948 -11.24038 -11.02588 -10.95979 -10.45508 -10.38442 -10.32720 -9.95882 -9.63076 -9.16662 -9.12476 -8.57716 -7.69969 -7.37737 -7.03967 -4.47057 2.00906 2.21411 2.44840 2.70398 3.09148 3.13509 3.32473 3.60412 3.60569 3.93737 4.51795 4.65144 4.80541 4.83509 4.97041 5.10197 5.23753 5.33529 5.33652 5.73310 5.87781 6.01575 6.11508 6.24921 6.33548 6.47832 6.78828 6.95143 6.98864 7.24630 7.28072 7.51353 7.62380 7.71903 7.80189 7.93245 8.07904 8.13133 8.56999 8.69985 9.88620 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.034069 B = 0.003838 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.660357 B = 7293.422951 C = 7994.331981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.398 6.398 3 C 0.323 3.677 4 N -0.386 5.386 5 C 0.045 3.955 6 C -0.142 4.142 7 C -0.138 4.138 8 C -0.070 4.070 9 C -0.204 4.204 10 C 0.072 3.928 11 C -0.500 4.500 12 H 0.082 0.918 13 C 0.039 3.961 14 N -0.781 5.781 15 Si 1.067 2.933 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.032 4.032 20 F -0.164 7.164 21 C -0.096 4.096 22 C 0.054 3.946 23 N -0.303 5.303 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.172 0.828 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.302 0.698 33 H 0.101 0.899 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 4.853 -1.861 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.316 6.316 3 C 0.162 3.838 4 N -0.171 5.171 5 C -0.100 4.100 6 C -0.152 4.152 7 C -0.141 4.141 8 C -0.089 4.089 9 C -0.224 4.224 10 C 0.068 3.932 11 C -0.527 4.527 12 H 0.101 0.899 13 C -0.185 4.185 14 N -0.403 5.403 15 Si 0.890 3.110 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.197 1.197 19 C -0.052 4.052 20 F -0.143 7.143 21 C -0.116 4.116 22 C -0.132 4.132 23 N -0.125 5.125 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.189 0.811 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.260 5.778 -1.672 13.656 hybrid contribution -1.603 -0.823 -0.102 1.805 sum -13.863 4.956 -1.774 14.829 Atomic orbital electron populations 1.22771 0.78169 1.03879 1.00621 1.87755 1.21446 1.26831 1.95590 1.21811 0.75780 0.84752 1.01454 1.48067 1.04793 1.04887 1.59334 1.22645 0.91473 0.91865 1.03978 1.19252 0.91907 0.92509 1.11564 1.17058 0.90386 0.90016 1.16590 1.20357 0.91772 0.97747 0.98995 1.20640 0.98058 0.92202 1.11481 1.17706 0.90814 0.93162 0.91487 1.20565 0.95716 1.01395 1.35018 0.89950 1.27144 1.03672 0.94575 0.93080 1.70476 1.35836 1.18507 1.15474 0.83608 0.73720 0.76455 0.77263 1.19650 1.19911 1.19738 1.17311 0.93893 0.76356 1.17629 1.91277 1.95276 1.32359 1.95365 1.20217 0.96528 0.92633 1.02173 1.23947 0.95163 0.94177 0.99919 1.77001 0.98886 1.09881 1.26766 0.88483 0.93289 0.93304 0.90987 0.90987 0.81110 0.88422 0.86883 0.88446 0.88126 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 11.01 101.05 1.11 1.39 16 2 O -0.40 -4.50 9.84 -35.23 -0.35 -4.85 16 3 C 0.32 3.72 7.65 59.85 0.46 4.18 16 4 N -0.39 -6.20 4.00 -65.54 -0.26 -6.46 16 5 C 0.04 0.78 10.30 -16.44 -0.17 0.61 16 6 C -0.14 -2.73 6.08 -104.96 -0.64 -3.37 16 7 C -0.14 -3.01 5.90 -104.64 -0.62 -3.63 16 8 C -0.07 -1.54 9.51 -39.65 -0.38 -1.92 16 9 C -0.20 -5.01 7.92 -39.30 -0.31 -5.32 16 10 C 0.07 1.90 5.30 -106.73 -0.57 1.34 16 11 C -0.50 -13.24 8.68 -37.92 -0.33 -13.57 16 12 H 0.08 2.18 7.80 -52.49 -0.41 1.77 16 13 C 0.04 0.96 4.90 -17.33 -0.08 0.87 16 14 N -0.78 -20.02 12.31 55.55 0.68 -19.33 16 15 Si 1.07 20.98 30.01 -169.99 -5.10 15.88 16 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 19 C -0.03 -0.81 7.26 -39.08 -0.28 -1.10 16 20 F -0.16 -4.17 16.70 2.25 0.04 -4.14 16 21 C -0.10 -2.19 9.47 -39.62 -0.38 -2.57 16 22 C 0.05 0.94 11.42 -17.01 -0.19 0.74 16 23 N -0.30 -5.21 12.51 30.84 0.39 -4.83 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.17 2.80 7.01 -52.48 -0.37 2.44 16 30 H 0.10 1.86 7.03 -52.48 -0.37 1.49 16 31 H 0.11 2.81 6.52 -52.49 -0.34 2.46 16 32 H 0.30 7.93 6.79 -40.82 -0.28 7.65 16 33 H 0.10 2.06 7.01 -52.49 -0.37 1.70 16 34 H 0.18 2.73 7.33 -52.48 -0.38 2.34 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -29.86 302.24 -5.85 -35.71 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.43 Total: 5.80 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.37 Total: -22.34 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.81 Total: -30.62 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.35 Total: -4.85 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.04 Total: -4.14 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.10 Total: 15.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.86 -5.85 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245220223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.526 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds