Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99756 * 2 1 4 4 N 1.46500 * 109.47513 * 179.97438 * 3 2 1 5 5 C 1.34705 * 125.81298 * 359.97438 * 4 3 2 6 6 C 1.37826 * 107.39632 * 180.02562 * 5 4 3 7 7 C 1.48021 * 126.36597 * 180.02562 * 6 5 4 8 8 C 1.40032 * 119.86126 * 180.02562 * 7 6 5 9 9 C 1.36187 * 120.18019 * 179.97438 * 8 7 6 10 10 C 1.40936 * 119.90102 * 0.02562 * 9 8 7 11 11 C 1.40950 * 120.13704 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00141 * 205.36239 * 11 10 9 13 13 C 1.39928 * 119.99894 * 25.36763 * 11 10 9 14 14 N 1.30869 * 120.00315 * 26.60218 * 13 11 10 15 15 Si 1.86800 * 120.00071 * 206.60173 * 13 11 10 16 16 H 1.48502 * 109.47324 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47509 * 299.99900 * 15 13 11 18 18 H 1.48502 * 109.47250 * 60.00007 * 15 13 11 19 19 C 1.41184 * 119.72918 * 0.26078 * 10 9 8 20 20 F 1.35097 * 120.09452 * 179.74765 * 19 10 9 21 21 C 1.36543 * 119.81178 * 359.48061 * 19 10 9 22 22 C 1.41081 * 107.27109 * 0.26549 * 6 5 4 23 23 N 1.30560 * 108.12244 * 359.55686 * 22 6 5 24 24 H 1.09007 * 109.46754 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47470 * 300.00046 * 1 2 3 26 26 H 1.08994 * 109.46895 * 60.00475 * 1 2 3 27 27 H 1.09002 * 109.47217 * 59.99817 * 3 2 1 28 28 H 1.09000 * 109.47120 * 300.00177 * 3 2 1 29 29 H 1.08004 * 126.30238 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.91023 * 359.97438 * 8 7 6 31 31 H 1.07997 * 120.04862 * 180.02562 * 9 8 7 32 32 H 0.96998 * 119.99623 * 5.88430 * 14 13 11 33 33 H 1.08000 * 119.94815 * 180.25967 * 21 19 10 34 34 H 1.08003 * 125.93971 * 179.73095 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 3.4706 1.1900 0.0006 5 6 4.1703 0.0389 0.0016 6 6 5.5082 0.3698 0.0025 7 6 6.6464 -0.5765 0.0032 8 6 7.9589 -0.0884 0.0046 9 6 9.0110 -0.9532 0.0058 10 6 8.7779 -2.3431 0.0050 11 6 9.8630 -3.2427 0.0057 12 1 9.7398 -4.2378 -0.3954 13 6 11.1000 -2.8463 0.5262 14 7 11.1556 -1.9161 1.4450 15 14 12.6720 -3.6451 -0.0905 16 1 13.8375 -3.0528 0.6138 17 1 12.6224 -5.1053 0.1749 18 1 12.8059 -3.4116 -1.5509 19 6 7.4530 -2.8308 -0.0025 20 9 7.2211 -4.1618 -0.0084 21 6 6.4066 -1.9536 0.0017 22 6 5.5913 1.7782 0.0082 23 7 4.3766 2.2567 0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.7586 -0.9596 0.0017 30 1 8.1374 0.9768 0.0048 31 1 10.0223 -0.5744 0.0073 32 1 10.3372 -1.5619 1.8266 33 1 5.3923 -2.3243 0.0002 34 1 6.5015 2.3595 0.0144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245220223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = -16.192039 kcal Electronic energy + Delta-G solvation = -20095.715713 eV Core-core repulsion = 16715.820495 eV Total energy + Delta-G solvation = -3379.895219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.29095 -42.08410 -39.45849 -38.93390 -36.07839 -33.58089 -32.32630 -31.20608 -30.07712 -28.25803 -27.12216 -25.82107 -23.48735 -23.29127 -21.41047 -21.23387 -19.97227 -18.76135 -17.62575 -17.49492 -16.91118 -16.81340 -16.64926 -16.12095 -15.73016 -15.51403 -15.41943 -14.92945 -14.65773 -14.43416 -14.02929 -13.84928 -13.60852 -13.27910 -12.99823 -12.70359 -12.64758 -12.43905 -11.95797 -11.78520 -11.77518 -11.41390 -11.16816 -10.95688 -10.40323 -10.23104 -9.58614 -9.26958 -8.73853 -6.42287 0.41738 0.79632 0.97355 1.18470 1.51376 1.55547 1.81978 2.01091 2.31382 2.71223 2.72651 3.44932 3.69807 3.86206 3.93842 4.01090 4.05055 4.21771 4.40261 4.45279 4.49845 4.59623 4.62594 4.72989 4.81888 4.97088 5.09672 5.36686 5.41227 5.60702 5.68783 5.77419 5.89446 5.97629 6.03170 6.06286 6.24190 6.66372 6.74063 6.79209 7.94816 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.034069 B = 0.003838 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.660357 B = 7293.422951 C = 7994.331981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.423 6.423 3 C 0.314 3.686 4 N -0.382 5.382 5 C 0.060 3.940 6 C -0.181 4.181 7 C -0.113 4.113 8 C -0.073 4.073 9 C -0.210 4.210 10 C 0.044 3.956 11 C -0.544 4.544 12 H 0.067 0.933 13 C 0.009 3.991 14 N -0.800 5.800 15 Si 1.117 2.883 16 H -0.265 1.265 17 H -0.262 1.262 18 H -0.261 1.261 19 C -0.061 4.061 20 F -0.171 7.171 21 C -0.102 4.102 22 C 0.056 3.944 23 N -0.309 5.309 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.182 0.818 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.287 0.713 33 H 0.123 0.877 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 6.353 -2.243 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.342 6.342 3 C 0.155 3.845 4 N -0.165 5.165 5 C -0.086 4.086 6 C -0.192 4.192 7 C -0.116 4.116 8 C -0.091 4.091 9 C -0.229 4.229 10 C 0.040 3.960 11 C -0.571 4.571 12 H 0.086 0.914 13 C -0.209 4.209 14 N -0.422 5.422 15 Si 0.933 3.067 16 H -0.189 1.189 17 H -0.186 1.186 18 H -0.186 1.186 19 C -0.080 4.080 20 F -0.150 7.150 21 C -0.121 4.121 22 C -0.129 4.129 23 N -0.131 5.131 24 H 0.124 0.876 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.199 0.801 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.150 7.304 -2.053 16.056 hybrid contribution -1.461 -1.132 0.007 1.849 sum -15.611 6.172 -2.046 16.912 Atomic orbital electron populations 1.23040 0.75815 1.05028 1.02174 1.87726 1.23914 1.26687 1.95869 1.22234 0.73271 0.85524 1.03498 1.48512 1.06576 1.04054 1.57395 1.22836 0.91251 0.92914 1.01626 1.19171 0.91752 0.93036 1.15200 1.17379 0.91344 0.90123 1.12723 1.20694 0.91278 0.99188 0.97962 1.20661 0.98475 0.91951 1.11833 1.18030 0.91378 0.94182 0.92377 1.20651 0.97357 1.01300 1.37842 0.91437 1.28471 1.06160 0.94195 0.92049 1.70588 1.34723 1.20156 1.16701 0.83013 0.70185 0.76209 0.77293 1.18892 1.18631 1.18600 1.17652 0.94591 0.76546 1.19254 1.91239 1.95295 1.32938 1.95572 1.20477 0.96955 0.92896 1.01793 1.24269 0.96161 0.93463 0.99036 1.76991 0.98930 1.10317 1.26890 0.87631 0.91750 0.91715 0.88915 0.88842 0.80123 0.85122 0.87748 0.90083 0.85918 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.25 9.84 -148.98 -1.47 -9.71 16 3 C 0.31 6.11 7.65 127.77 0.98 7.09 16 4 N -0.38 -11.03 4.00 -461.74 -1.84 -12.88 16 5 C 0.06 1.96 10.30 84.15 0.87 2.83 16 6 C -0.18 -6.54 6.08 -20.08 -0.12 -6.67 16 7 C -0.11 -4.80 5.90 -19.87 -0.12 -4.92 16 8 C -0.07 -3.15 9.51 22.23 0.21 -2.94 16 9 C -0.21 -10.50 7.92 22.45 0.18 -10.32 16 10 C 0.04 2.39 5.30 -21.23 -0.11 2.28 16 11 C -0.54 -30.18 8.68 23.34 0.20 -29.98 16 12 H 0.07 3.79 7.80 -2.91 -0.02 3.77 16 13 C 0.01 0.47 4.90 85.25 0.42 0.88 16 14 N -0.80 -42.30 12.31 21.83 0.27 -42.03 16 15 Si 1.12 42.90 30.01 68.60 2.06 44.96 16 16 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 17 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 18 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 19 C -0.06 -3.17 7.26 22.60 0.16 -3.00 16 20 F -0.17 -9.04 16.70 44.97 0.75 -8.29 16 21 C -0.10 -4.63 9.47 22.25 0.21 -4.42 16 22 C 0.06 1.80 11.42 85.58 0.98 2.77 16 23 N -0.31 -9.66 12.51 -56.36 -0.71 -10.36 16 24 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.18 5.45 7.01 -2.91 -0.02 5.43 16 30 H 0.13 4.71 7.03 -2.91 -0.02 4.69 16 31 H 0.10 5.34 6.52 -2.91 -0.02 5.32 16 32 H 0.29 15.74 6.79 -92.71 -0.63 15.11 16 33 H 0.12 4.90 7.01 -2.91 -0.02 4.88 16 34 H 0.21 5.42 7.33 -2.91 -0.02 5.39 16 Total: -1.00 -65.99 302.24 5.43 -60.55 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 1.27 Total: 22.56 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 5.10 Total: -44.80 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -2.28 Total: -65.27 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.47 Total: -9.71 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 0.75 Total: -8.29 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.06 Total: 44.96 kcal Total: -65.99 5.43 -60.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245220223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.362 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds