Wall clock time and date at job start Mon Mar 30 2020 01:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99854 * 2 1 4 4 N 1.46497 * 109.47084 * 179.97438 * 3 2 1 5 5 C 1.34710 * 125.81286 * 359.97438 * 4 3 2 6 6 C 1.37884 * 107.38606 * 179.70504 * 5 4 3 7 7 C 1.47913 * 126.36880 * 180.28992 * 6 5 4 8 8 C 1.39063 * 120.31920 * 309.71934 * 7 6 5 9 9 C 1.38346 * 119.95975 * 179.74340 * 8 7 6 10 10 F 1.35108 * 119.69412 * 180.23580 * 9 8 7 11 11 C 1.39239 * 120.61214 * 0.51777 * 9 8 7 12 12 C 1.36330 * 120.65296 * 359.76216 * 11 9 8 13 13 C 1.40792 * 120.01538 * 359.97438 * 12 11 9 14 14 C 1.40834 * 120.29798 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99842 * 153.81657 * 14 13 12 16 16 C 1.39975 * 120.00109 * 333.80917 * 14 13 12 17 17 N 1.30845 * 120.00356 * 343.27025 * 16 14 13 18 18 Si 1.86810 * 119.99598 * 163.27245 * 16 14 13 19 19 H 1.48500 * 109.46959 * 94.63717 * 18 16 14 20 20 H 1.48501 * 109.46934 * 214.63653 * 18 16 14 21 21 H 1.48495 * 109.47162 * 334.63351 * 18 16 14 22 22 C 1.41119 * 107.25856 * 0.26373 * 6 5 4 23 23 N 1.30546 * 108.11808 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47724 * 300.00449 * 1 2 3 25 25 H 1.09004 * 109.47058 * 60.00402 * 1 2 3 26 26 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47063 * 59.99410 * 3 2 1 28 28 H 1.09000 * 109.46819 * 299.99637 * 3 2 1 29 29 H 1.07996 * 126.30509 * 359.97137 * 5 4 3 30 30 H 1.08003 * 120.02005 * 0.02562 * 8 7 6 31 31 H 1.07998 * 119.67289 * 179.74190 * 11 9 8 32 32 H 1.08001 * 119.99572 * 179.97438 * 12 11 9 33 33 H 0.96999 * 120.00147 * 179.97438 * 17 16 14 34 34 H 1.07997 * 125.93663 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 3.4706 1.1899 0.0006 5 6 4.1701 0.0387 0.0016 6 6 5.5086 0.3699 -0.0049 7 6 6.6461 -0.5756 -0.0124 8 6 6.7004 -1.6157 0.9090 9 6 7.7651 -2.4989 0.8919 10 9 7.8101 -3.5104 1.7865 11 6 8.7937 -2.3516 -0.0349 12 6 8.7687 -1.3376 -0.9458 13 6 7.6953 -0.4265 -0.9561 14 6 7.6636 0.6235 -1.8940 15 1 6.7179 1.0469 -2.1989 16 6 8.8577 1.1186 -2.4310 17 7 9.9975 0.8546 -1.8453 18 14 8.8238 2.1564 -3.9840 19 1 8.7971 3.5951 -3.6173 20 1 10.0359 1.8744 -4.7942 21 1 7.6116 1.8244 -4.7748 22 6 5.5913 1.7786 -0.0037 23 7 4.3765 2.2566 0.0037 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6884 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.7584 -0.9597 0.0025 30 1 5.9096 -1.7367 1.6346 31 1 9.6198 -3.0474 -0.0320 32 1 9.5723 -1.2330 -1.6596 33 1 10.8250 1.1974 -2.2176 34 1 6.5013 2.3601 -0.0080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245221073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:28 Heat of formation + Delta-G solvation = 9.369270 kcal Electronic energy + Delta-G solvation = -20499.843118 eV Core-core repulsion = 17121.056320 eV Total energy + Delta-G solvation = -3378.786797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.41820 -40.46163 -38.11103 -37.24287 -33.63933 -32.27674 -30.78153 -29.42840 -28.21801 -27.10626 -25.36463 -24.76095 -21.71692 -21.10654 -20.10069 -19.36070 -17.47318 -17.10832 -16.49963 -16.47936 -15.60667 -15.34872 -14.56873 -14.22990 -14.19320 -14.13620 -13.97012 -13.46562 -12.84208 -12.54294 -12.28348 -12.15765 -11.94156 -11.86823 -11.67907 -11.28460 -11.06035 -10.87400 -10.40630 -10.25554 -10.17869 -9.93420 -9.48321 -9.18832 -8.80592 -8.13220 -7.37414 -7.11250 -6.81083 -4.37451 2.34433 2.44489 2.65844 2.78867 3.04784 3.07922 3.14263 3.71154 3.79029 3.88110 4.50160 4.81331 4.94209 4.97247 5.11459 5.32690 5.40905 5.55754 5.67018 5.86741 6.13480 6.17231 6.27751 6.61301 6.66160 6.69962 6.97124 7.07925 7.16382 7.32818 7.45170 7.53128 7.75645 7.86521 7.97638 8.17305 8.37099 8.51316 8.77727 8.86014 10.07629 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.006620 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.301871 B = 4228.329883 C = 6015.063207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.399 6.399 3 C 0.325 3.675 4 N -0.393 5.393 5 C 0.051 3.949 6 C -0.137 4.137 7 C -0.117 4.117 8 C -0.102 4.102 9 C -0.048 4.048 10 F -0.176 7.176 11 C -0.128 4.128 12 C -0.138 4.138 13 C 0.120 3.880 14 C -0.441 4.441 15 H 0.084 0.916 16 C 0.076 3.924 17 N -0.787 5.787 18 Si 0.905 3.095 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.260 1.260 22 C 0.084 3.916 23 N -0.314 5.314 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.169 0.831 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.283 0.717 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 1.190 0.511 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.317 6.317 3 C 0.164 3.836 4 N -0.177 5.177 5 C -0.093 4.093 6 C -0.148 4.148 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.068 4.068 10 F -0.155 7.155 11 C -0.147 4.147 12 C -0.157 4.157 13 C 0.117 3.883 14 C -0.470 4.470 15 H 0.102 0.898 16 C -0.143 4.143 17 N -0.412 5.412 18 Si 0.729 3.271 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.102 4.102 23 N -0.136 5.136 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.186 0.814 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.094 0.906 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.233 2.105 0.528 12.424 hybrid contribution 0.428 -0.270 -0.524 0.729 sum -11.805 1.834 0.004 11.947 Atomic orbital electron populations 1.22747 0.78423 1.03703 1.00543 1.87751 1.21247 1.27082 1.95575 1.21761 0.76162 0.84485 1.01230 1.48059 1.04557 1.05055 1.60030 1.22770 0.91662 0.91709 1.03169 1.19023 0.91256 0.92734 1.11786 1.17679 0.97322 0.97657 0.99294 1.20509 0.96770 0.95460 0.99393 1.17178 1.00501 0.92448 0.96636 1.91279 1.97086 1.59474 1.67667 1.20453 0.97121 0.99992 0.97130 1.20890 1.00854 0.93970 1.00011 1.17573 0.89693 0.91443 0.89631 1.19525 0.93561 1.14568 1.19369 0.89792 1.25954 0.94940 0.95952 0.97423 1.69812 0.99322 1.36321 1.35714 0.86333 0.79074 0.80116 0.81558 1.19369 1.20001 1.18408 1.24133 0.94749 0.94527 0.96786 1.77043 0.99063 1.09599 1.27881 0.93415 0.93367 0.88629 0.91247 0.91168 0.81368 0.88209 0.88357 0.85662 0.90609 0.79441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 11.01 101.05 1.11 1.43 16 2 O -0.40 -4.94 9.83 -35.23 -0.35 -5.29 16 3 C 0.32 4.21 7.65 59.85 0.46 4.67 16 4 N -0.39 -6.98 4.00 -65.53 -0.26 -7.24 16 5 C 0.05 0.98 10.81 -16.42 -0.18 0.80 16 6 C -0.14 -2.95 4.97 -104.97 -0.52 -3.47 16 7 C -0.12 -2.76 5.81 -104.23 -0.61 -3.36 16 8 C -0.10 -2.35 9.68 -39.24 -0.38 -2.73 16 9 C -0.05 -1.13 7.31 -39.17 -0.29 -1.42 16 10 F -0.18 -4.02 17.26 2.25 0.04 -3.98 16 11 C -0.13 -3.01 9.94 -39.90 -0.40 -3.41 16 12 C -0.14 -3.43 8.62 -39.30 -0.34 -3.77 16 13 C 0.12 3.01 5.58 -106.55 -0.59 2.41 16 14 C -0.44 -10.89 7.74 -37.95 -0.29 -11.19 16 15 H 0.08 2.07 6.67 -52.49 -0.35 1.72 16 16 C 0.08 1.79 5.15 -17.32 -0.09 1.70 16 17 N -0.79 -19.07 11.00 55.55 0.61 -18.46 16 18 Si 0.90 17.96 29.59 -169.99 -5.03 12.93 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 C 0.08 1.74 10.36 -17.01 -0.18 1.57 16 23 N -0.31 -6.15 12.51 30.84 0.39 -5.77 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.17 2.97 7.77 -52.49 -0.41 2.56 16 30 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.13 3.16 6.24 -52.49 -0.33 2.83 16 33 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 34 H 0.19 3.79 7.94 -52.49 -0.42 3.37 16 LS Contribution 303.87 15.07 4.58 4.58 Total: -1.00 -28.34 303.87 -5.91 -34.24 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.60 Total: 5.75 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.29 Total: -16.76 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.74 Total: -31.46 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.35 Total: -5.29 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.34 -5.91 -34.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245221073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.614 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds