Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99854 * 2 1 4 4 N 1.46497 * 109.47084 * 179.97438 * 3 2 1 5 5 C 1.34710 * 125.81286 * 359.97438 * 4 3 2 6 6 C 1.37884 * 107.38606 * 179.70504 * 5 4 3 7 7 C 1.47913 * 126.36880 * 180.28992 * 6 5 4 8 8 C 1.39063 * 120.31920 * 309.71934 * 7 6 5 9 9 C 1.38346 * 119.95975 * 179.74340 * 8 7 6 10 10 F 1.35108 * 119.69412 * 180.23580 * 9 8 7 11 11 C 1.39239 * 120.61214 * 0.51777 * 9 8 7 12 12 C 1.36330 * 120.65296 * 359.76216 * 11 9 8 13 13 C 1.40792 * 120.01538 * 359.97438 * 12 11 9 14 14 C 1.40834 * 120.29798 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99842 * 153.81657 * 14 13 12 16 16 C 1.39975 * 120.00109 * 333.80917 * 14 13 12 17 17 N 1.30845 * 120.00356 * 343.27025 * 16 14 13 18 18 Si 1.86810 * 119.99598 * 163.27245 * 16 14 13 19 19 H 1.48500 * 109.46959 * 94.63717 * 18 16 14 20 20 H 1.48501 * 109.46934 * 214.63653 * 18 16 14 21 21 H 1.48495 * 109.47162 * 334.63351 * 18 16 14 22 22 C 1.41119 * 107.25856 * 0.26373 * 6 5 4 23 23 N 1.30546 * 108.11808 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47724 * 300.00449 * 1 2 3 25 25 H 1.09004 * 109.47058 * 60.00402 * 1 2 3 26 26 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47063 * 59.99410 * 3 2 1 28 28 H 1.09000 * 109.46819 * 299.99637 * 3 2 1 29 29 H 1.07996 * 126.30509 * 359.97137 * 5 4 3 30 30 H 1.08003 * 120.02005 * 0.02562 * 8 7 6 31 31 H 1.07998 * 119.67289 * 179.74190 * 11 9 8 32 32 H 1.08001 * 119.99572 * 179.97438 * 12 11 9 33 33 H 0.96999 * 120.00147 * 179.97438 * 17 16 14 34 34 H 1.07997 * 125.93663 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 3.4706 1.1899 0.0006 5 6 4.1701 0.0387 0.0016 6 6 5.5086 0.3699 -0.0049 7 6 6.6461 -0.5756 -0.0124 8 6 6.7004 -1.6157 0.9090 9 6 7.7651 -2.4989 0.8919 10 9 7.8101 -3.5104 1.7865 11 6 8.7937 -2.3516 -0.0349 12 6 8.7687 -1.3376 -0.9458 13 6 7.6953 -0.4265 -0.9561 14 6 7.6636 0.6235 -1.8940 15 1 6.7179 1.0469 -2.1989 16 6 8.8577 1.1186 -2.4310 17 7 9.9975 0.8546 -1.8453 18 14 8.8238 2.1564 -3.9840 19 1 8.7971 3.5951 -3.6173 20 1 10.0359 1.8744 -4.7942 21 1 7.6116 1.8244 -4.7748 22 6 5.5913 1.7786 -0.0037 23 7 4.3765 2.2566 0.0037 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6884 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.7584 -0.9597 0.0025 30 1 5.9096 -1.7367 1.6346 31 1 9.6198 -3.0474 -0.0320 32 1 9.5723 -1.2330 -1.6596 33 1 10.8250 1.1974 -2.2176 34 1 6.5013 2.3601 -0.0080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245221073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = -6.747596 kcal Electronic energy + Delta-G solvation = -20500.541997 eV Core-core repulsion = 17121.056320 eV Total energy + Delta-G solvation = -3379.485677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.25742 -41.94551 -39.26579 -38.79910 -35.45661 -33.70141 -32.40008 -31.26489 -29.77795 -27.98469 -26.93116 -26.13319 -23.40588 -22.87880 -21.58894 -20.97862 -19.24684 -18.59254 -17.64247 -17.44205 -17.16086 -16.91236 -16.34768 -16.01562 -15.78933 -15.41762 -15.33518 -14.81404 -14.43480 -13.99864 -13.78250 -13.70529 -13.67244 -13.32140 -13.00679 -12.73694 -12.53900 -12.43604 -12.17880 -11.80981 -11.70981 -11.25507 -11.07581 -10.98248 -10.24391 -9.82642 -9.22255 -8.84178 -8.57187 -6.24210 0.68676 0.89652 1.08491 1.29148 1.42656 1.48854 1.55879 2.05923 2.22587 2.69225 2.79521 3.64563 3.84741 3.98810 4.06099 4.10248 4.19686 4.35478 4.39658 4.47264 4.53237 4.77975 4.84793 4.89875 5.01050 5.18827 5.24960 5.34040 5.56922 5.61208 5.81149 5.95940 6.02988 6.11352 6.16961 6.33647 6.65081 6.86353 6.93184 7.00758 8.31798 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.006620 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.301871 B = 4228.329883 C = 6015.063207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.422 6.422 3 C 0.316 3.684 4 N -0.385 5.385 5 C 0.065 3.935 6 C -0.170 4.170 7 C -0.116 4.116 8 C -0.105 4.105 9 C -0.059 4.059 10 F -0.172 7.172 11 C -0.131 4.131 12 C -0.156 4.156 13 C 0.095 3.905 14 C -0.458 4.458 15 H 0.078 0.922 16 C 0.043 3.957 17 N -0.813 5.813 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.264 1.264 22 C 0.072 3.928 23 N -0.317 5.317 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.185 0.815 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.291 0.709 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.525 1.723 0.190 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.341 6.341 3 C 0.157 3.843 4 N -0.168 5.168 5 C -0.081 4.081 6 C -0.181 4.181 7 C -0.119 4.119 8 C -0.125 4.125 9 C -0.079 4.079 10 F -0.151 7.151 11 C -0.150 4.150 12 C -0.176 4.176 13 C 0.092 3.908 14 C -0.486 4.486 15 H 0.096 0.904 16 C -0.174 4.174 17 N -0.438 5.438 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.190 1.190 21 H -0.188 1.188 22 C -0.113 4.113 23 N -0.140 5.140 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.202 0.798 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.076 2.643 0.220 14.324 hybrid contribution 0.829 -0.461 -0.365 1.016 sum -13.248 2.181 -0.144 13.427 Atomic orbital electron populations 1.23040 0.75903 1.05043 1.02090 1.87726 1.23854 1.26629 1.95849 1.22172 0.73389 0.85469 1.03249 1.48479 1.06397 1.04094 1.57869 1.22912 0.90996 0.92791 1.01424 1.19025 0.91746 0.92794 1.14558 1.17916 0.97558 0.97873 0.98542 1.20709 0.97073 0.95136 0.99540 1.17315 1.00829 0.92854 0.96892 1.91280 1.97094 1.59276 1.67469 1.20610 0.97705 0.99958 0.96772 1.20852 1.01096 0.94890 1.00752 1.17903 0.90503 0.91967 0.90441 1.19589 0.93860 1.14998 1.20159 0.90426 1.26640 0.94232 0.96780 0.99712 1.69846 1.00018 1.37085 1.36891 0.85347 0.78993 0.78624 0.77815 1.18751 1.19012 1.18841 1.24035 0.95175 0.94321 0.97741 1.76973 0.98875 1.10244 1.27893 0.91753 0.91910 0.87473 0.88958 0.89269 0.79850 0.86434 0.86675 0.86645 0.89799 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -9.28 9.83 -148.98 -1.47 -10.74 16 3 C 0.32 7.28 7.65 127.77 0.98 8.26 16 4 N -0.38 -12.95 4.00 -461.69 -1.84 -14.79 16 5 C 0.07 2.42 10.81 84.17 0.91 3.33 16 6 C -0.17 -7.31 4.97 -20.09 -0.10 -7.41 16 7 C -0.12 -5.54 5.81 -19.61 -0.11 -5.65 16 8 C -0.11 -4.83 9.68 22.49 0.22 -4.61 16 9 C -0.06 -2.79 7.31 22.54 0.16 -2.63 16 10 F -0.17 -7.73 17.26 44.97 0.78 -6.95 16 11 C -0.13 -6.25 9.94 22.07 0.22 -6.03 16 12 C -0.16 -7.96 8.62 22.45 0.19 -7.76 16 13 C 0.09 4.87 5.58 -21.11 -0.12 4.75 16 14 C -0.46 -23.00 7.74 23.33 0.18 -22.82 16 15 H 0.08 3.91 6.67 -2.91 -0.02 3.89 16 16 C 0.04 2.04 5.15 85.26 0.44 2.48 16 17 N -0.81 -39.87 11.00 21.83 0.24 -39.63 16 18 Si 0.97 36.71 29.59 68.60 2.03 38.74 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 C 0.07 3.01 10.36 85.59 0.89 3.90 16 23 N -0.32 -12.08 12.51 -56.34 -0.70 -12.79 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.18 6.14 7.77 -2.91 -0.02 6.12 16 30 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.12 6.00 6.24 -2.91 -0.02 5.98 16 33 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 34 H 0.18 7.56 7.94 -2.91 -0.02 7.54 16 Total: -1.00 -60.22 303.87 5.26 -54.96 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 1.12 Total: 23.75 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 5.11 Total: -32.54 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -2.31 Total: -67.21 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.47 Total: -10.74 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.78 Total: -6.95 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -60.22 5.26 -54.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245221073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.213 kcal (2) G-P(sol) polarization free energy of solvation -60.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds