Wall clock time and date at job start Mon Mar 30 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00432 * 2 1 4 4 N 1.46501 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.34716 * 125.81406 * 359.97438 * 4 3 2 6 6 C 1.37869 * 107.38441 * 179.97438 * 5 4 3 7 7 C 1.47995 * 126.36251 * 180.02562 * 6 5 4 8 8 C 1.39929 * 119.89446 * 309.72678 * 7 6 5 9 9 C 1.36231 * 120.14127 * 179.71787 * 8 7 6 10 10 C 1.40972 * 119.91867 * 0.53885 * 9 8 7 11 11 C 1.41019 * 120.10133 * 179.76563 * 10 9 8 12 12 H 1.08001 * 120.00056 * 24.68288 * 11 10 9 13 13 C 1.39931 * 119.99964 * 204.68862 * 11 10 9 14 14 N 1.30848 * 119.99734 * 17.98309 * 13 11 10 15 15 Si 1.86795 * 120.00243 * 197.98298 * 13 11 10 16 16 H 1.48498 * 109.47464 * 90.00068 * 15 13 11 17 17 H 1.48500 * 109.47193 * 210.00138 * 15 13 11 18 18 H 1.48499 * 109.47211 * 329.99837 * 15 13 11 19 19 C 1.40884 * 119.79382 * 359.73464 * 10 9 8 20 20 C 1.36442 * 119.85723 * 0.02562 * 19 10 9 21 21 F 1.35095 * 119.96153 * 179.97438 * 20 19 10 22 22 C 1.41089 * 107.26643 * 0.02562 * 6 5 4 23 23 N 1.30546 * 108.12762 * 359.97438 * 22 6 5 24 24 H 1.09005 * 109.46766 * 59.99881 * 1 2 3 25 25 H 1.08994 * 109.47671 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47376 * 300.00221 * 1 2 3 27 27 H 1.09008 * 109.46942 * 60.00046 * 3 2 1 28 28 H 1.08995 * 109.47117 * 300.00351 * 3 2 1 29 29 H 1.07999 * 126.31133 * 359.71585 * 5 4 3 30 30 H 1.08008 * 119.93274 * 359.97438 * 8 7 6 31 31 H 1.07997 * 120.03952 * 180.27098 * 9 8 7 32 32 H 0.97004 * 120.00255 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.06913 * 180.02562 * 19 10 9 34 34 H 1.08008 * 125.93519 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1896 -0.0006 5 6 4.1702 0.0383 -0.0006 6 6 5.5085 0.3695 -0.0019 7 6 6.6466 -0.5767 -0.0029 8 6 6.6881 -1.6187 0.9301 9 6 7.7303 -2.4959 0.9300 10 6 8.7749 -2.3466 -0.0048 11 6 9.8581 -3.2495 -0.0052 12 1 9.7318 -4.2446 0.3951 13 6 11.0967 -2.8561 -0.5240 14 7 11.3665 -1.5854 -0.6808 15 14 12.3650 -4.1449 -0.9928 16 1 12.1735 -4.5344 -2.4129 17 1 13.7289 -3.5858 -0.8124 18 1 12.2010 -5.3391 -0.1256 19 6 8.7329 -1.2930 -0.9391 20 6 7.6823 -0.4224 -0.9344 21 9 7.6402 0.5890 -1.8290 22 6 5.5914 1.7779 -0.0021 23 7 4.3768 2.2563 -0.0015 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8463 -0.8899 29 1 3.7586 -0.9601 0.0041 30 1 5.8900 -1.7302 1.6493 31 1 7.7585 -3.3021 1.6481 32 1 12.2252 -1.3125 -1.0401 33 1 9.5305 -1.1747 -1.6576 34 1 6.5017 2.3593 -0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245221564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:37 Heat of formation + Delta-G solvation = -8.249296 kcal Electronic energy + Delta-G solvation = -20184.449480 eV Core-core repulsion = 16804.898685 eV Total energy + Delta-G solvation = -3379.550795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.46172 -42.00071 -39.23777 -38.88425 -35.71387 -33.60982 -32.39206 -30.95279 -30.18621 -28.26427 -27.18302 -25.83824 -23.34620 -22.88586 -21.67858 -21.16022 -19.46980 -18.55152 -17.66399 -17.47010 -17.32688 -16.61622 -16.38644 -16.17257 -16.07232 -15.42372 -15.38371 -14.83493 -14.42962 -14.25142 -13.92358 -13.67935 -13.50603 -13.37938 -12.98320 -12.76167 -12.60310 -12.40171 -12.06278 -11.87032 -11.74090 -11.41511 -11.13581 -11.04616 -10.34181 -9.80942 -9.32648 -8.83818 -8.65152 -6.36873 0.63346 0.95575 1.04131 1.21206 1.40803 1.48330 1.55160 1.92001 2.20336 2.68253 2.76221 3.60404 3.78165 3.88764 3.98081 4.07178 4.09774 4.41795 4.45780 4.52965 4.56887 4.68787 4.84993 4.86440 4.96767 5.08339 5.21170 5.29228 5.48198 5.71655 5.74609 5.92757 6.02253 6.03759 6.08890 6.30584 6.60759 6.75525 6.85706 6.93035 8.26473 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.035645 B = 0.003830 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.343034 B = 7309.359191 C = 7795.374105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.421 6.421 3 C 0.315 3.685 4 N -0.382 5.382 5 C 0.076 3.924 6 C -0.185 4.185 7 C -0.176 4.176 8 C -0.047 4.047 9 C -0.238 4.238 10 C 0.104 3.896 11 C -0.483 4.483 12 H 0.090 0.910 13 C 0.033 3.967 14 N -0.816 5.816 15 Si 0.987 3.013 16 H -0.264 1.264 17 H -0.269 1.269 18 H -0.252 1.252 19 C -0.231 4.231 20 C 0.111 3.889 21 F -0.165 7.165 22 C 0.054 3.946 23 N -0.311 5.311 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.191 0.809 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.291 0.709 33 H 0.107 0.893 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.571 1.727 1.276 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.339 6.339 3 C 0.156 3.844 4 N -0.165 5.165 5 C -0.071 4.071 6 C -0.196 4.196 7 C -0.179 4.179 8 C -0.065 4.065 9 C -0.258 4.258 10 C 0.101 3.899 11 C -0.512 4.512 12 H 0.108 0.892 13 C -0.184 4.184 14 N -0.441 5.441 15 Si 0.807 3.193 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.175 1.175 19 C -0.251 4.251 20 C 0.092 3.908 21 F -0.144 7.144 22 C -0.131 4.131 23 N -0.134 5.134 24 H 0.081 0.919 25 H 0.126 0.874 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.208 0.792 30 H 0.146 0.854 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.203 2.846 1.187 16.494 hybrid contribution 1.284 -0.591 -0.490 1.496 sum -14.919 2.256 0.697 15.105 Atomic orbital electron populations 1.23043 0.75820 1.05100 1.02098 1.87722 1.23881 1.26469 1.95856 1.22213 0.73130 0.85630 1.03430 1.48547 1.06580 1.04109 1.57298 1.22967 0.90720 0.92971 1.00481 1.19096 0.92244 0.92530 1.15735 1.17538 0.95896 1.01802 1.02654 1.20477 0.97240 0.92779 0.96023 1.20950 0.98380 1.03874 1.02563 1.17735 0.92622 0.90827 0.88675 1.19909 0.94806 1.00448 1.35989 0.89210 1.26912 1.01529 0.97870 0.92059 1.69900 1.24222 1.18406 1.31564 0.85124 0.76114 0.78425 0.79633 1.18837 1.19372 1.17497 1.20857 0.99025 1.00874 1.04366 1.17592 0.96702 0.86911 0.89639 1.91307 1.96817 1.59173 1.67114 1.24133 0.95691 0.94259 0.99041 1.76969 0.98769 1.10327 1.27376 0.91928 0.87423 0.91725 0.88763 0.89151 0.79246 0.85410 0.86748 0.89823 0.87506 0.79806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.26 9.83 -148.98 -1.47 -9.73 16 3 C 0.31 6.48 7.65 127.77 0.98 7.46 16 4 N -0.38 -11.83 4.00 -461.71 -1.84 -13.67 16 5 C 0.08 2.58 10.81 84.16 0.91 3.49 16 6 C -0.18 -7.41 5.39 -20.08 -0.11 -7.52 16 7 C -0.18 -8.01 5.79 -19.82 -0.11 -8.12 16 8 C -0.05 -2.02 9.64 22.21 0.21 -1.81 16 9 C -0.24 -11.21 9.73 22.47 0.22 -10.99 16 10 C 0.10 5.54 5.57 -21.28 -0.12 5.42 16 11 C -0.48 -25.14 9.03 23.36 0.21 -24.93 16 12 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 13 C 0.03 1.62 5.13 85.25 0.44 2.06 16 14 N -0.82 -42.57 10.96 21.83 0.24 -42.33 16 15 Si 0.99 37.04 29.60 68.60 2.03 39.08 16 16 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 17 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 18 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 19 C -0.23 -12.59 8.60 22.50 0.19 -12.39 16 20 C 0.11 5.63 7.20 22.32 0.16 5.79 16 21 F -0.17 -8.19 16.35 44.97 0.74 -7.45 16 22 C 0.05 2.06 11.42 85.58 0.98 3.03 16 23 N -0.31 -10.99 12.51 -56.35 -0.70 -11.69 16 24 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.19 5.72 7.77 -2.91 -0.02 5.70 16 30 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 31 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.29 13.72 8.30 -92.70 -0.77 12.95 16 33 H 0.11 6.16 6.16 -2.91 -0.02 6.14 16 34 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 Total: -1.00 -64.25 306.53 5.32 -58.93 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 1.12 Total: 23.79 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 5.21 Total: -36.92 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -2.31 Total: -67.70 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.47 Total: -9.73 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.74 Total: -7.45 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.08 kcal Total: -64.25 5.32 -58.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245221564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.682 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds