Wall clock time and date at job start Mon Mar 30 2020 01:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99819 * 2 1 4 4 N 1.46505 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.34715 * 125.81354 * 0.25001 * 4 3 2 6 6 C 1.37874 * 107.38878 * 180.13593 * 5 4 3 7 7 C 1.47927 * 126.36920 * 179.89858 * 6 5 4 8 8 C 1.39070 * 120.25736 * 309.72705 * 7 6 5 9 9 C 1.38102 * 120.17224 * 179.97438 * 8 7 6 10 10 C 1.38842 * 120.71872 * 359.97438 * 9 8 7 11 11 C 1.37708 * 120.51751 * 359.78452 * 10 9 8 12 12 F 1.35102 * 120.09410 * 180.23698 * 11 10 9 13 13 C 1.41018 * 119.79920 * 0.47215 * 11 10 9 14 14 C 1.40816 * 120.34488 * 179.78660 * 13 11 10 15 15 H 1.07998 * 120.00180 * 144.74011 * 14 13 11 16 16 C 1.40006 * 119.99734 * 324.74656 * 14 13 11 17 17 N 1.30838 * 119.99789 * 149.66178 * 16 14 13 18 18 Si 1.86794 * 120.00062 * 329.38127 * 16 14 13 19 19 H 1.48492 * 109.47236 * 270.27651 * 18 16 14 20 20 H 1.48503 * 109.47282 * 30.28003 * 18 16 14 21 21 H 1.48502 * 109.46975 * 150.27458 * 18 16 14 22 22 C 1.41115 * 107.26035 * 359.63163 * 6 5 4 23 23 N 1.30544 * 108.11957 * 0.22541 * 22 6 5 24 24 H 1.08997 * 109.46823 * 59.99995 * 1 2 3 25 25 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47248 * 300.00098 * 1 2 3 27 27 H 1.08993 * 109.47842 * 60.00129 * 3 2 1 28 28 H 1.08997 * 109.47203 * 299.99504 * 3 2 1 29 29 H 1.08002 * 126.30838 * 359.97438 * 5 4 3 30 30 H 1.07993 * 119.91398 * 359.95856 * 8 7 6 31 31 H 1.08000 * 119.64023 * 180.02562 * 9 8 7 32 32 H 1.07998 * 119.74063 * 180.02562 * 10 9 8 33 33 H 0.97002 * 119.99888 * 354.61431 * 17 16 14 34 34 H 1.08005 * 125.93704 * 180.19643 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 6 4.1702 0.0385 -0.0037 6 6 5.5086 0.3696 0.0019 7 6 6.6462 -0.5760 0.0020 8 6 6.6913 -1.6178 0.9222 9 6 7.7539 -2.4999 0.9205 10 6 8.7885 -2.3622 0.0048 11 6 8.7708 -1.3442 -0.9224 12 9 9.7796 -1.2211 -1.8126 13 6 7.6991 -0.4278 -0.9367 14 6 7.6717 0.6202 -1.8768 15 1 6.7306 0.9471 -2.2938 16 6 8.8644 1.2382 -2.2712 17 7 8.9750 1.7386 -3.4750 18 14 10.2952 1.3553 -1.0760 19 1 10.1856 2.6131 -0.2944 20 1 10.2643 0.1936 -0.1515 21 1 11.5733 1.3522 -1.8322 22 6 5.5915 1.7783 0.0010 23 7 4.3767 2.2564 0.0003 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.7586 -0.9600 -0.0077 30 1 5.8935 -1.7371 1.6402 31 1 7.7801 -3.3061 1.6386 32 1 9.6116 -3.0613 0.0173 33 1 8.2612 1.6133 -4.1198 34 1 6.5016 2.3597 0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245222465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:29 Heat of formation + Delta-G solvation = -3.469600 kcal Electronic energy + Delta-G solvation = -20845.416090 eV Core-core repulsion = 17466.072558 eV Total energy + Delta-G solvation = -3379.343532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.47779 -42.00092 -39.25337 -38.79922 -35.64157 -33.72159 -32.44737 -31.72017 -29.63306 -28.01319 -26.81320 -26.12886 -23.33058 -22.68399 -21.64721 -20.99397 -20.29543 -18.61123 -17.66621 -17.48718 -17.11806 -16.94717 -16.62346 -16.38178 -15.50415 -15.39924 -15.33746 -14.96127 -14.76128 -14.19665 -13.85506 -13.82585 -13.62167 -13.33094 -12.96758 -12.58741 -12.46576 -12.33736 -12.06098 -11.88508 -11.60509 -11.22641 -11.11321 -10.87251 -10.31084 -9.83084 -9.48955 -9.15543 -8.76538 -6.41912 0.56501 0.78581 0.99906 1.24149 1.44133 1.56338 1.70803 1.98057 2.26833 2.63096 2.75657 3.35907 3.78882 3.94565 4.04894 4.05600 4.13025 4.33165 4.45220 4.45565 4.50877 4.71795 4.77776 4.82338 4.82937 5.06159 5.17607 5.48946 5.52060 5.60136 5.66791 5.82320 5.99013 6.00365 6.12223 6.18438 6.38292 6.68223 6.80564 6.88823 7.98657 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.005803 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.504393 B = 4823.831294 C = 5595.567633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.420 6.420 3 C 0.317 3.683 4 N -0.385 5.385 5 C 0.070 3.930 6 C -0.176 4.176 7 C -0.102 4.102 8 C -0.081 4.081 9 C -0.196 4.196 10 C -0.121 4.121 11 C -0.044 4.044 12 F -0.163 7.163 13 C 0.058 3.942 14 C -0.539 4.539 15 H 0.054 0.946 16 C 0.030 3.970 17 N -0.828 5.828 18 Si 1.092 2.908 19 H -0.277 1.277 20 H -0.259 1.259 21 H -0.279 1.279 22 C 0.070 3.930 23 N -0.322 5.322 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.191 0.809 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.278 0.722 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.275 -3.941 9.080 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.338 6.338 3 C 0.157 3.843 4 N -0.169 5.169 5 C -0.077 4.077 6 C -0.187 4.187 7 C -0.104 4.104 8 C -0.100 4.100 9 C -0.215 4.215 10 C -0.140 4.140 11 C -0.064 4.064 12 F -0.142 7.142 13 C 0.055 3.945 14 C -0.567 4.567 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.451 5.451 18 Si 0.914 3.086 19 H -0.203 1.203 20 H -0.184 1.184 21 H -0.204 1.204 22 C -0.115 4.115 23 N -0.144 5.144 24 H 0.078 0.922 25 H 0.128 0.872 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.208 0.792 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.580 -2.373 9.102 15.708 hybrid contribution -0.952 -0.817 -1.227 1.755 sum -13.532 -3.190 7.875 15.978 Atomic orbital electron populations 1.23050 0.75840 1.05148 1.02055 1.87714 1.23880 1.26404 1.95845 1.22153 0.73337 0.85593 1.03176 1.48510 1.06439 1.04160 1.57745 1.22967 0.90767 0.92920 1.01017 1.19088 0.92095 0.92642 1.14866 1.18110 0.96119 0.98394 0.97780 1.21090 0.98171 0.93541 0.97155 1.20648 0.95269 1.03065 1.02512 1.20989 1.00472 0.97071 0.95418 1.18025 0.91203 1.01384 0.95806 1.91043 1.59237 1.95494 1.68474 1.17836 0.91665 0.92775 0.92252 1.20016 0.94934 1.18530 1.23222 0.92801 1.28083 1.02379 0.90510 0.97751 1.70606 1.33939 1.36759 1.03762 0.83391 0.72855 0.77438 0.74958 1.20347 1.18395 1.20404 1.24005 0.95061 0.94743 0.97650 1.76983 0.98994 1.10434 1.28028 0.92193 0.87241 0.91602 0.88657 0.89803 0.79167 0.85131 0.83797 0.85226 0.91143 0.80649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -8.93 9.83 -148.98 -1.47 -10.39 16 3 C 0.32 7.32 7.65 127.77 0.98 8.29 16 4 N -0.38 -13.03 4.00 -461.71 -1.84 -14.87 16 5 C 0.07 2.51 10.81 84.16 0.91 3.42 16 6 C -0.18 -7.41 5.00 -20.09 -0.10 -7.51 16 7 C -0.10 -4.54 5.81 -19.62 -0.11 -4.65 16 8 C -0.08 -3.05 9.69 22.44 0.22 -2.83 16 9 C -0.20 -7.00 10.02 22.38 0.22 -6.78 16 10 C -0.12 -4.91 9.99 22.29 0.22 -4.69 16 11 C -0.04 -2.18 5.07 22.83 0.12 -2.06 16 12 F -0.16 -8.43 12.93 44.97 0.58 -7.85 16 13 C 0.06 2.96 4.88 -21.08 -0.10 2.86 16 14 C -0.54 -29.88 7.67 23.33 0.18 -29.70 16 15 H 0.05 3.24 7.33 -2.91 -0.02 3.22 16 16 C 0.03 1.64 4.68 85.27 0.40 2.04 16 17 N -0.83 -47.41 13.65 21.84 0.30 -47.11 16 18 Si 1.09 51.84 25.90 68.60 1.78 53.62 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.26 -12.12 5.38 99.48 0.53 -11.59 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 C 0.07 3.03 10.56 85.59 0.90 3.93 16 23 N -0.32 -12.71 12.51 -56.34 -0.70 -13.42 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.19 5.91 7.77 -2.91 -0.02 5.88 16 30 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 32 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.28 15.86 8.73 -92.71 -0.81 15.05 16 34 H 0.18 7.69 7.94 -2.91 -0.02 7.67 16 Total: -1.00 -66.31 297.90 4.63 -61.69 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.90 Total: 14.37 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 5.08 Total: -36.04 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -2.25 Total: -75.40 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.47 Total: -10.39 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 0.58 Total: -7.85 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.78 Total: 53.62 kcal Total: -66.31 4.63 -61.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245222465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.218 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds