Wall clock time and date at job start Mon Mar 30 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00501 * 2 1 4 4 N 1.46497 * 109.47716 * 180.02562 * 3 2 1 5 5 C 1.34858 * 125.89268 * 359.97438 * 4 3 2 6 6 C 1.36428 * 107.60455 * 179.76297 * 5 4 3 7 7 C 1.48484 * 126.21892 * 180.28098 * 6 5 4 8 8 C 1.38599 * 120.01187 * 129.72315 * 7 6 5 9 9 C 1.40562 * 119.66679 * 179.82084 * 8 7 6 10 10 C 1.41331 * 120.16426 * 180.18384 * 9 8 7 11 11 H 1.07997 * 119.99808 * 330.43195 * 10 9 8 12 12 C 1.39890 * 120.00427 * 150.43613 * 10 9 8 13 13 N 1.30863 * 120.00079 * 161.72319 * 12 10 9 14 14 Si 1.86806 * 120.00030 * 341.72149 * 12 10 9 15 15 H 1.48500 * 109.46775 * 95.41557 * 14 12 10 16 16 H 1.48499 * 109.46988 * 215.41918 * 14 12 10 17 17 H 1.48502 * 109.46656 * 335.41818 * 14 12 10 18 18 C 1.40855 * 119.67768 * 0.44835 * 9 8 7 19 19 C 1.37566 * 120.01266 * 359.77872 * 18 9 8 20 20 C 1.38753 * 120.33773 * 359.97438 * 19 18 9 21 21 F 1.35100 * 119.83617 * 179.97438 * 20 19 18 22 22 C 1.40838 * 107.56213 * 0.24208 * 6 5 4 23 23 N 1.30679 * 108.09975 * 359.97438 * 22 6 5 24 24 H 1.08999 * 109.46841 * 300.00488 * 1 2 3 25 25 H 1.09000 * 109.46910 * 59.99968 * 1 2 3 26 26 H 1.08996 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47186 * 59.99604 * 3 2 1 28 28 H 1.09001 * 109.46820 * 300.00263 * 3 2 1 29 29 H 1.07995 * 126.19265 * 0.02664 * 5 4 3 30 30 H 1.08007 * 120.16907 * 0.02562 * 8 7 6 31 31 H 0.97005 * 119.99675 * 179.97438 * 13 12 10 32 32 H 1.08005 * 119.99253 * 179.75022 * 18 9 8 33 33 H 1.07995 * 119.83224 * 179.97438 * 19 18 9 34 34 H 1.07993 * 125.95153 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1897 -0.0006 5 6 4.1726 0.0382 -0.0006 6 6 5.4977 0.3627 -0.0067 7 6 6.6348 -0.5921 -0.0148 8 6 7.6542 -0.4484 -0.9428 9 6 8.7290 -1.3542 -0.9415 10 6 9.7760 -1.2152 -1.8806 11 1 9.5783 -0.7808 -2.8493 12 6 11.0685 -1.6402 -1.5553 13 7 11.9460 -1.8506 -2.5030 14 14 11.5418 -1.9075 0.2320 15 1 11.3744 -3.3416 0.5791 16 1 12.9587 -1.5114 0.4333 17 1 10.6682 -1.0819 1.1040 18 6 8.7548 -2.4045 -0.0033 19 6 7.7336 -2.5376 0.9088 20 6 6.6749 -1.6407 0.9114 21 9 5.6772 -1.7813 1.8114 22 6 5.5911 1.7680 -0.0048 23 7 4.3787 2.2555 0.0015 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.7603 -0.9599 -0.0006 30 1 7.6245 0.3575 -1.6612 31 1 12.8424 -2.1450 -2.2774 32 1 9.5762 -3.1058 -0.0004 33 1 7.7561 -3.3442 1.6266 34 1 6.5055 2.3427 -0.0087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245222988.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:41 Heat of formation + Delta-G solvation = -6.447557 kcal Electronic energy + Delta-G solvation = -20327.341988 eV Core-core repulsion = 16947.869322 eV Total energy + Delta-G solvation = -3379.472666 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.32557 -42.18606 -39.40183 -38.94888 -35.53836 -33.89117 -32.64084 -31.88919 -30.01369 -28.02099 -26.75833 -26.29712 -23.84560 -22.77693 -21.77394 -21.40636 -19.41649 -18.46634 -18.12458 -17.51734 -17.31451 -17.07146 -16.56528 -16.07460 -15.74638 -15.46258 -15.43777 -14.94743 -14.62567 -14.41522 -14.06213 -13.85597 -13.69699 -13.60987 -13.38563 -12.72924 -12.51686 -12.40787 -12.16331 -11.93824 -11.88955 -11.44616 -11.15471 -10.99426 -10.42635 -10.04896 -9.45950 -8.89607 -8.88128 -6.47764 0.44959 0.65386 0.88992 1.14415 1.30601 1.43509 1.52890 1.80069 2.15067 2.53575 2.70501 3.40006 3.67954 3.80495 3.93374 4.00668 4.04601 4.18614 4.23433 4.43278 4.50966 4.59617 4.64835 4.77186 4.83095 4.85149 5.02349 5.22646 5.42172 5.48117 5.66000 5.71552 5.80409 5.87157 5.96506 6.20473 6.34814 6.65868 6.69023 6.80167 8.18320 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.031532 B = 0.004305 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.769101 B = 6502.077683 C = 6871.395400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.423 6.423 3 C 0.313 3.687 4 N -0.384 5.384 5 C 0.096 3.904 6 C -0.217 4.217 7 C 0.003 3.997 8 C -0.178 4.178 9 C 0.074 3.926 10 C -0.474 4.474 11 H 0.063 0.937 12 C 0.052 3.948 13 N -0.843 5.843 14 Si 0.958 3.042 15 H -0.255 1.255 16 H -0.277 1.277 17 H -0.251 1.251 18 C -0.227 4.227 19 C -0.102 4.102 20 C -0.033 4.033 21 F -0.160 7.160 22 C 0.068 3.932 23 N -0.305 5.305 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.180 0.820 30 H 0.115 0.885 31 H 0.295 0.705 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.368 3.567 6.338 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.342 6.342 3 C 0.154 3.846 4 N -0.166 5.166 5 C -0.052 4.052 6 C -0.228 4.228 7 C 0.001 3.999 8 C -0.198 4.198 9 C 0.071 3.929 10 C -0.503 4.503 11 H 0.081 0.919 12 C -0.164 4.164 13 N -0.469 5.469 14 Si 0.781 3.219 15 H -0.180 1.180 16 H -0.204 1.204 17 H -0.175 1.175 18 C -0.247 4.247 19 C -0.121 4.121 20 C -0.053 4.053 21 F -0.139 7.139 22 C -0.117 4.117 23 N -0.127 5.127 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.197 0.803 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.154 0.846 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.981 4.427 6.218 19.534 hybrid contribution 0.820 -0.834 0.293 1.206 sum -17.161 3.593 6.510 18.703 Atomic orbital electron populations 1.23046 0.75725 1.05076 1.02196 1.87730 1.23996 1.26611 1.95877 1.22274 0.73006 0.85620 1.03676 1.48692 1.06769 1.03937 1.57249 1.22522 0.91075 0.92991 0.98573 1.18946 0.92227 0.93518 1.18099 1.17852 0.93683 0.93240 0.95091 1.21025 0.96286 1.01039 1.01425 1.17803 0.93085 0.90536 0.91432 1.19429 0.93256 1.36613 1.01005 0.91917 1.26783 0.95933 0.90462 1.03229 1.69732 1.06777 1.33539 1.36843 0.85592 0.77357 0.80457 0.78468 1.17975 1.20376 1.17469 1.20997 1.00793 1.01035 1.01833 1.20771 0.93247 0.98657 0.99435 1.17421 0.90360 1.02068 0.95486 1.91311 1.60088 1.95983 1.66528 1.24300 0.96374 0.93149 0.97923 1.77126 0.98606 1.10097 1.26859 0.91713 0.91698 0.87567 0.88710 0.88668 0.80254 0.86725 0.89433 0.87143 0.84645 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.39 9.84 -148.98 -1.47 -9.85 16 3 C 0.31 6.20 7.65 127.77 0.98 7.18 16 4 N -0.38 -11.35 4.00 -462.85 -1.85 -13.20 16 5 C 0.10 3.21 10.19 83.81 0.85 4.07 16 6 C -0.22 -8.10 5.36 -20.33 -0.11 -8.21 16 7 C 0.00 0.15 5.75 -20.04 -0.12 0.03 16 8 C -0.18 -8.14 9.45 22.92 0.22 -7.92 16 9 C 0.07 3.68 5.10 -21.31 -0.11 3.57 16 10 C -0.47 -25.66 9.56 23.43 0.22 -25.43 16 11 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 12 C 0.05 2.67 5.40 85.24 0.46 3.13 16 13 N -0.84 -44.88 13.93 21.82 0.30 -44.57 16 14 Si 0.96 41.17 24.51 68.60 1.68 42.85 16 15 H -0.25 -10.26 6.70 99.48 0.67 -9.59 16 16 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.25 -11.06 6.87 99.48 0.68 -10.38 16 18 C -0.23 -10.48 7.16 22.75 0.16 -10.32 16 19 C -0.10 -4.29 9.99 22.23 0.22 -4.07 16 20 C -0.03 -1.42 7.26 22.81 0.17 -1.25 16 21 F -0.16 -6.46 16.33 44.97 0.73 -5.72 16 22 C 0.07 2.31 11.93 85.50 1.02 3.33 16 23 N -0.30 -9.82 12.54 -56.46 -0.71 -10.53 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.18 5.75 7.77 -2.91 -0.02 5.72 16 30 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 31 H 0.30 14.08 8.30 -92.70 -0.77 13.31 16 32 H 0.11 4.99 4.72 -2.91 -0.01 4.97 16 33 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 34 H 0.20 5.93 8.06 -2.91 -0.02 5.91 16 Total: -1.00 -62.78 301.39 4.97 -57.81 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.06 Total: 17.52 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 5.22 Total: -34.30 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -2.26 Total: -68.31 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.47 Total: -9.85 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.73 Total: -5.72 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.68 Total: 42.85 kcal Total: -62.78 4.97 -57.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245222988.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.358 kcal (2) G-P(sol) polarization free energy of solvation -62.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds