Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00209 * 2 1 4 4 N 1.46501 * 109.47221 * 179.97438 * 3 2 1 5 5 C 1.34712 * 125.81119 * 0.02562 * 4 3 2 6 6 C 1.37908 * 107.38093 * 179.97438 * 5 4 3 7 7 C 1.47899 * 126.37369 * 179.97438 * 6 5 4 8 8 C 1.39157 * 120.25178 * 309.72655 * 7 6 5 9 9 C 1.37977 * 120.13366 * 179.71908 * 8 7 6 10 10 C 1.39210 * 120.64963 * 0.55392 * 9 8 7 11 11 F 1.35105 * 119.74512 * 179.74075 * 10 9 8 12 12 C 1.37590 * 120.50665 * 359.72600 * 10 9 8 13 13 C 1.40728 * 119.84653 * 359.97438 * 12 10 9 14 14 C 1.40876 * 120.31858 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00215 * 153.28657 * 14 13 12 16 16 C 1.39995 * 119.99925 * 333.28623 * 14 13 12 17 17 N 1.30828 * 119.99949 * 344.27668 * 16 14 13 18 18 Si 1.86801 * 120.00400 * 164.28235 * 16 14 13 19 19 H 1.48499 * 109.47069 * 89.99637 * 18 16 14 20 20 H 1.48493 * 109.47403 * 210.00067 * 18 16 14 21 21 H 1.48503 * 109.46599 * 329.99721 * 18 16 14 22 22 C 1.41128 * 107.25525 * 359.97438 * 6 5 4 23 23 N 1.30543 * 108.11680 * 359.97438 * 22 6 5 24 24 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47220 * 300.00390 * 1 2 3 26 26 H 1.09001 * 109.47142 * 60.00315 * 1 2 3 27 27 H 1.08998 * 109.47251 * 59.99654 * 3 2 1 28 28 H 1.09000 * 109.46791 * 300.00003 * 3 2 1 29 29 H 1.08008 * 126.30970 * 359.70692 * 5 4 3 30 30 H 1.08007 * 119.93080 * 359.97173 * 8 7 6 31 31 H 1.08005 * 119.67824 * 180.27587 * 9 8 7 32 32 H 1.08004 * 120.07705 * 180.02562 * 12 10 9 33 33 H 0.96996 * 119.99782 * 180.02562 * 17 16 14 34 34 H 1.07996 * 125.94203 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 6 4.1702 0.0384 0.0006 6 6 5.5089 0.3697 0.0007 7 6 6.6464 -0.5755 0.0013 8 6 6.6944 -1.6141 0.9262 9 6 7.7539 -2.4980 0.9208 10 6 8.7905 -2.3576 0.0024 11 9 9.8217 -3.2305 0.0168 12 6 8.7729 -1.3370 -0.9202 13 6 7.6994 -0.4271 -0.9377 14 6 7.6710 0.6212 -1.8783 15 1 6.7260 1.0373 -2.1948 16 6 8.8678 1.1237 -2.4028 17 7 10.0046 0.8523 -1.8148 18 14 8.8417 2.1817 -3.9421 19 1 8.6996 3.6094 -3.5591 20 1 10.1089 1.9944 -4.6931 21 1 7.6955 1.7822 -4.7977 22 6 5.5915 1.7786 0.0002 23 7 4.3766 2.2565 -0.0008 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.7584 -0.9601 0.0046 30 1 5.8987 -1.7309 1.6472 31 1 7.7815 -3.3040 1.6392 32 1 9.5806 -1.2349 -1.6299 33 1 10.8337 1.2008 -2.1780 34 1 6.5014 2.3603 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245224701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = 8.590950 kcal Electronic energy + Delta-G solvation = -20489.501130 eV Core-core repulsion = 17110.680583 eV Total energy + Delta-G solvation = -3378.820548 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.59380 -40.44741 -38.10955 -37.17610 -33.71756 -32.20870 -30.52209 -29.74212 -27.94704 -27.02104 -25.54279 -24.83399 -21.55983 -21.18254 -20.13312 -19.29616 -17.58310 -17.10003 -16.49152 -16.38146 -15.80962 -14.87733 -14.68578 -14.54942 -14.26504 -14.15579 -13.86664 -13.30163 -12.91541 -12.58382 -12.51497 -12.13995 -11.86777 -11.79439 -11.57843 -11.28137 -11.10248 -10.72425 -10.43018 -10.29410 -10.23886 -9.81516 -9.59144 -9.24105 -8.79701 -7.97087 -7.54914 -7.00064 -6.72562 -4.44156 2.34608 2.44911 2.68065 2.79446 3.05611 3.09354 3.16896 3.70919 3.79170 3.88843 4.51953 4.81244 4.93861 4.96960 5.11301 5.32068 5.40738 5.56883 5.68345 5.72932 6.17425 6.27095 6.39458 6.51322 6.66930 6.70526 6.98192 7.01361 7.20615 7.33856 7.52675 7.55200 7.72008 7.84303 7.95114 8.20445 8.38513 8.52494 8.77779 8.84156 10.09014 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.006127 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.140479 B = 4568.931782 C = 6090.674295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.399 6.399 3 C 0.325 3.675 4 N -0.393 5.393 5 C 0.049 3.951 6 C -0.135 4.135 7 C -0.140 4.140 8 C -0.054 4.054 9 C -0.276 4.276 10 C 0.102 3.898 11 F -0.169 7.169 12 C -0.196 4.196 13 C 0.144 3.856 14 C -0.442 4.442 15 H 0.086 0.914 16 C 0.076 3.924 17 N -0.785 5.785 18 Si 0.906 3.094 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.260 1.260 22 C 0.083 3.917 23 N -0.314 5.314 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.169 0.831 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.283 0.717 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 1.003 1.468 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.317 6.317 3 C 0.164 3.836 4 N -0.178 5.178 5 C -0.095 4.095 6 C -0.146 4.146 7 C -0.143 4.143 8 C -0.073 4.073 9 C -0.296 4.296 10 C 0.083 3.917 11 F -0.148 7.148 12 C -0.216 4.216 13 C 0.141 3.859 14 C -0.471 4.471 15 H 0.104 0.896 16 C -0.143 4.143 17 N -0.409 5.409 18 Si 0.730 3.270 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.103 4.103 23 N -0.136 5.136 24 H 0.114 0.886 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.186 0.814 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.094 0.906 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.164 1.918 1.452 13.382 hybrid contribution 0.600 -0.252 -0.655 0.924 sum -12.564 1.665 0.797 12.699 Atomic orbital electron populations 1.22745 0.78440 1.03688 1.00543 1.87747 1.21227 1.27106 1.95575 1.21753 0.76208 0.84461 1.01203 1.48056 1.04521 1.05076 1.60109 1.22770 0.91662 0.91668 1.03429 1.19072 0.91318 0.92726 1.11487 1.17968 0.97391 0.98654 1.00294 1.20365 0.96115 0.93871 0.96911 1.20166 0.98338 1.05627 1.05507 1.17756 0.85213 0.89814 0.98883 1.91328 1.58214 1.68910 1.96371 1.21202 1.03259 0.95382 1.01769 1.17268 0.88802 0.90541 0.89298 1.19519 0.93521 1.14605 1.19465 0.89647 1.25981 0.94951 0.96097 0.97316 1.69811 0.99372 1.36074 1.35653 0.86328 0.78891 0.80239 0.81521 1.19240 1.20043 1.18415 1.24145 0.94707 0.94631 0.96858 1.77039 0.99099 1.09615 1.27886 0.88639 0.93415 0.93382 0.91265 0.91218 0.81393 0.88450 0.88332 0.85377 0.90553 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 11.01 101.05 1.11 1.42 16 2 O -0.40 -4.85 9.83 -35.23 -0.35 -5.20 16 3 C 0.32 4.16 7.65 59.85 0.46 4.62 16 4 N -0.39 -6.92 4.00 -65.52 -0.26 -7.18 16 5 C 0.05 0.92 10.81 -16.41 -0.18 0.74 16 6 C -0.14 -2.88 4.96 -104.97 -0.52 -3.40 16 7 C -0.14 -3.29 5.82 -104.21 -0.61 -3.89 16 8 C -0.05 -1.19 9.69 -39.34 -0.38 -1.57 16 9 C -0.28 -6.27 10.01 -39.32 -0.39 -6.66 16 10 C 0.10 2.52 7.28 -39.46 -0.29 2.24 16 11 F -0.17 -4.04 17.26 2.25 0.04 -4.00 16 12 C -0.20 -5.08 8.63 -38.88 -0.34 -5.42 16 13 C 0.14 3.67 5.57 -106.57 -0.59 3.08 16 14 C -0.44 -11.06 7.73 -37.93 -0.29 -11.35 16 15 H 0.09 2.12 6.70 -52.49 -0.35 1.77 16 16 C 0.08 1.82 5.17 -17.32 -0.09 1.73 16 17 N -0.78 -19.56 10.98 55.55 0.61 -18.95 16 18 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 C 0.08 1.71 10.37 -17.00 -0.18 1.53 16 23 N -0.31 -6.13 12.51 30.84 0.39 -5.75 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.17 2.89 7.77 -52.48 -0.41 2.48 16 30 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 31 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.13 3.45 6.25 -52.48 -0.33 3.12 16 33 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 34 H 0.19 3.78 7.94 -52.49 -0.42 3.36 16 LS Contribution 303.95 15.07 4.58 4.58 Total: -1.00 -28.67 303.95 -5.91 -34.57 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.60 Total: 5.66 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.28 Total: -16.94 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.73 Total: -31.88 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.35 Total: -5.20 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.00 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.67 -5.91 -34.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245224701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.162 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds