Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00209 * 2 1 4 4 N 1.46501 * 109.47221 * 179.97438 * 3 2 1 5 5 C 1.34712 * 125.81119 * 0.02562 * 4 3 2 6 6 C 1.37908 * 107.38093 * 179.97438 * 5 4 3 7 7 C 1.47899 * 126.37369 * 179.97438 * 6 5 4 8 8 C 1.39157 * 120.25178 * 309.72655 * 7 6 5 9 9 C 1.37977 * 120.13366 * 179.71908 * 8 7 6 10 10 C 1.39210 * 120.64963 * 0.55392 * 9 8 7 11 11 F 1.35105 * 119.74512 * 179.74075 * 10 9 8 12 12 C 1.37590 * 120.50665 * 359.72600 * 10 9 8 13 13 C 1.40728 * 119.84653 * 359.97438 * 12 10 9 14 14 C 1.40876 * 120.31858 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00215 * 153.28657 * 14 13 12 16 16 C 1.39995 * 119.99925 * 333.28623 * 14 13 12 17 17 N 1.30828 * 119.99949 * 344.27668 * 16 14 13 18 18 Si 1.86801 * 120.00400 * 164.28235 * 16 14 13 19 19 H 1.48499 * 109.47069 * 89.99637 * 18 16 14 20 20 H 1.48493 * 109.47403 * 210.00067 * 18 16 14 21 21 H 1.48503 * 109.46599 * 329.99721 * 18 16 14 22 22 C 1.41128 * 107.25525 * 359.97438 * 6 5 4 23 23 N 1.30543 * 108.11680 * 359.97438 * 22 6 5 24 24 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47220 * 300.00390 * 1 2 3 26 26 H 1.09001 * 109.47142 * 60.00315 * 1 2 3 27 27 H 1.08998 * 109.47251 * 59.99654 * 3 2 1 28 28 H 1.09000 * 109.46791 * 300.00003 * 3 2 1 29 29 H 1.08008 * 126.30970 * 359.70692 * 5 4 3 30 30 H 1.08007 * 119.93080 * 359.97173 * 8 7 6 31 31 H 1.08005 * 119.67824 * 180.27587 * 9 8 7 32 32 H 1.08004 * 120.07705 * 180.02562 * 12 10 9 33 33 H 0.96996 * 119.99782 * 180.02562 * 17 16 14 34 34 H 1.07996 * 125.94203 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 6 4.1702 0.0384 0.0006 6 6 5.5089 0.3697 0.0007 7 6 6.6464 -0.5755 0.0013 8 6 6.6944 -1.6141 0.9262 9 6 7.7539 -2.4980 0.9208 10 6 8.7905 -2.3576 0.0024 11 9 9.8217 -3.2305 0.0168 12 6 8.7729 -1.3370 -0.9202 13 6 7.6994 -0.4271 -0.9377 14 6 7.6710 0.6212 -1.8783 15 1 6.7260 1.0373 -2.1948 16 6 8.8678 1.1237 -2.4028 17 7 10.0046 0.8523 -1.8148 18 14 8.8417 2.1817 -3.9421 19 1 8.6996 3.6094 -3.5591 20 1 10.1089 1.9944 -4.6931 21 1 7.6955 1.7822 -4.7977 22 6 5.5915 1.7786 0.0002 23 7 4.3766 2.2565 -0.0008 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.7584 -0.9601 0.0046 30 1 5.8987 -1.7309 1.6472 31 1 7.7815 -3.3040 1.6392 32 1 9.5806 -1.2349 -1.6299 33 1 10.8337 1.2008 -2.1780 34 1 6.5014 2.3603 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245224701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = -8.107135 kcal Electronic energy + Delta-G solvation = -20490.225214 eV Core-core repulsion = 17110.680583 eV Total energy + Delta-G solvation = -3379.544631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.50013 -41.91325 -39.21663 -38.75621 -35.54432 -33.58727 -32.14288 -31.57704 -29.46819 -27.93369 -27.23472 -26.06926 -23.28806 -22.93463 -21.58997 -20.90789 -19.41586 -18.42330 -17.71250 -17.39836 -17.29726 -16.63707 -16.36850 -16.16637 -16.03104 -15.35692 -15.29496 -14.70790 -14.42680 -14.25702 -13.90732 -13.68077 -13.34598 -13.27148 -13.05996 -12.76879 -12.47186 -12.38180 -12.14647 -12.01215 -11.52218 -11.38340 -11.05286 -11.04098 -10.21608 -9.62320 -9.41804 -8.77854 -8.48767 -6.32652 0.66152 0.96972 1.08604 1.31537 1.39927 1.48849 1.54113 2.06816 2.20564 2.70331 2.81968 3.62846 3.86222 3.88877 4.06502 4.11935 4.21685 4.45973 4.48865 4.54721 4.59775 4.78213 4.84916 4.87526 5.02666 5.15139 5.21664 5.38284 5.58825 5.71095 5.82426 5.86873 6.05322 6.10810 6.20272 6.35790 6.64684 6.88638 6.92550 6.97902 8.30967 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.006127 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.140479 B = 4568.931782 C = 6090.674295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.421 6.421 3 C 0.317 3.683 4 N -0.385 5.385 5 C 0.066 3.934 6 C -0.168 4.168 7 C -0.138 4.138 8 C -0.054 4.054 9 C -0.272 4.272 10 C 0.087 3.913 11 F -0.169 7.169 12 C -0.222 4.222 13 C 0.118 3.882 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.040 3.960 17 N -0.818 5.818 18 Si 0.972 3.028 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.262 1.262 22 C 0.070 3.930 23 N -0.319 5.319 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.188 0.812 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.289 0.711 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 1.253 1.737 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.339 6.339 3 C 0.158 3.842 4 N -0.169 5.169 5 C -0.080 4.080 6 C -0.180 4.180 7 C -0.141 4.141 8 C -0.072 4.072 9 C -0.291 4.291 10 C 0.067 3.933 11 F -0.148 7.148 12 C -0.242 4.242 13 C 0.115 3.885 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.177 4.177 17 N -0.443 5.443 18 Si 0.793 3.207 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.186 1.186 22 C -0.115 4.115 23 N -0.142 5.142 24 H 0.126 0.874 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.205 0.795 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.701 2.175 1.732 15.946 hybrid contribution 1.188 -0.381 -0.656 1.410 sum -14.513 1.794 1.076 14.663 Atomic orbital electron populations 1.23036 0.75942 1.05050 1.02042 1.87721 1.23797 1.26572 1.95842 1.22152 0.73444 0.85483 1.03170 1.48476 1.06354 1.04160 1.57913 1.22944 0.90874 0.92808 1.01402 1.19052 0.91846 0.92670 1.14383 1.18255 0.97317 0.99067 0.99458 1.20700 0.96624 0.93009 0.96900 1.20483 0.97488 1.06194 1.04984 1.17966 0.85982 0.89831 0.99475 1.91315 1.58348 1.68767 1.96416 1.21130 1.03594 0.96845 1.02657 1.17583 0.89629 0.90912 0.90354 1.19591 0.93780 1.15118 1.20423 0.90130 1.26713 0.94258 0.97023 0.99659 1.69868 1.00070 1.37281 1.37063 0.85337 0.78842 0.78729 0.77747 1.18435 1.19266 1.18635 1.24029 0.95075 0.94550 0.97878 1.76971 0.98919 1.10328 1.27975 0.87419 0.91751 0.92033 0.88963 0.89461 0.79537 0.85264 0.85709 0.87426 0.89982 0.80349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -8.86 9.83 -148.98 -1.47 -10.32 16 3 C 0.32 7.08 7.65 127.77 0.98 8.05 16 4 N -0.39 -12.67 4.00 -461.67 -1.84 -14.51 16 5 C 0.07 2.36 10.81 84.17 0.91 3.27 16 6 C -0.17 -7.07 4.96 -20.09 -0.10 -7.17 16 7 C -0.14 -6.47 5.82 -19.60 -0.11 -6.58 16 8 C -0.05 -2.30 9.69 22.43 0.22 -2.08 16 9 C -0.27 -12.01 10.01 22.44 0.22 -11.79 16 10 C 0.09 4.31 7.28 22.35 0.16 4.48 16 11 F -0.17 -8.18 17.26 44.97 0.78 -7.40 16 12 C -0.22 -11.93 8.63 22.73 0.20 -11.73 16 13 C 0.12 6.19 5.57 -21.13 -0.12 6.08 16 14 C -0.46 -23.70 7.73 23.34 0.18 -23.52 16 15 H 0.08 4.11 6.70 -2.91 -0.02 4.09 16 16 C 0.04 1.95 5.17 85.27 0.44 2.39 16 17 N -0.82 -42.13 10.98 21.84 0.24 -41.89 16 18 Si 0.97 37.90 29.59 68.60 2.03 39.93 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 22 C 0.07 2.88 10.37 85.59 0.89 3.77 16 23 N -0.32 -12.05 12.51 -56.34 -0.70 -12.75 16 24 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.19 5.89 7.77 -2.91 -0.02 5.87 16 30 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 32 H 0.11 6.11 6.25 -2.91 -0.02 6.10 16 33 H 0.29 13.57 8.30 -92.71 -0.77 12.81 16 34 H 0.18 7.47 7.94 -2.91 -0.02 7.45 16 Total: -1.00 -62.37 303.95 5.27 -57.10 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.12 Total: 23.05 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 5.11 Total: -33.20 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -2.31 Total: -69.15 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.47 Total: -10.32 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.78 Total: -7.40 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -62.37 5.27 -57.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245224701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.995 kcal (2) G-P(sol) polarization free energy of solvation -62.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds