Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35755 * 120.00018 * 2 1 4 4 C 1.41295 * 119.99687 * 352.73073 * 3 2 1 5 5 O 1.21705 * 120.00335 * 354.55757 * 4 3 2 6 6 O 1.35003 * 119.99728 * 174.55850 * 4 3 2 7 7 C 1.42901 * 116.99726 * 182.68703 * 6 4 3 8 8 C 1.50695 * 112.85463 * 294.68893 * 7 6 4 9 9 H 1.08000 * 120.00445 * 118.10844 * 8 7 6 10 10 C 1.37880 * 119.99998 * 298.11607 * 8 7 6 11 11 N 1.31512 * 120.00045 * 1.45816 * 10 8 7 12 12 Si 1.86796 * 120.00174 * 181.45679 * 10 8 7 13 13 H 1.48499 * 109.47540 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47294 * 299.99784 * 12 10 8 15 15 H 1.48503 * 109.47280 * 59.99658 * 12 10 8 16 16 C 1.53778 * 113.61545 * 65.88744 * 7 6 4 17 17 C 1.53954 * 87.02030 * 89.22544 * 16 7 6 18 18 C 1.53774 * 87.11162 * 25.36415 * 17 16 7 19 19 C 1.41525 * 120.00133 * 179.97438 * 2 1 3 20 20 C 1.37999 * 126.10734 * 294.71199 * 19 2 1 21 21 C 1.40289 * 106.52762 * 179.88507 * 20 19 2 22 22 C 1.35178 * 107.20475 * 0.38151 * 21 20 19 23 23 O 1.34009 * 109.04686 * 359.75731 * 22 21 20 24 24 H 1.08997 * 109.47124 * 83.64997 * 1 2 3 25 25 H 1.09003 * 109.47385 * 203.65039 * 1 2 3 26 26 H 1.09000 * 109.47307 * 323.64986 * 1 2 3 27 27 H 1.07996 * 120.00237 * 172.72955 * 3 2 1 28 28 H 0.97005 * 120.00082 * 355.08686 * 11 10 8 29 29 H 1.08997 * 113.62092 * 203.74889 * 16 7 6 30 30 H 1.09004 * 113.61401 * 334.65390 * 16 7 6 31 31 H 1.08998 * 113.53852 * 270.81246 * 17 16 7 32 32 H 1.09003 * 113.74288 * 139.95098 * 17 16 7 33 33 H 1.08996 * 113.61688 * 220.08917 * 18 17 16 34 34 H 1.09007 * 113.68848 * 89.19528 * 18 17 16 35 35 H 1.08005 * 126.74118 * 0.02562 * 20 19 2 36 36 H 1.07991 * 126.39432 * 180.17525 * 21 20 19 37 37 H 1.07998 * 125.47679 * 179.76257 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 1.4877 2.3944 -0.1548 5 8 0.2931 2.3862 -0.3871 6 8 2.1461 3.5679 -0.0452 7 6 1.3674 4.7612 -0.1545 8 6 0.7603 4.9406 -1.5220 9 1 -0.3133 4.9671 -1.6370 10 6 1.5753 5.0710 -2.6264 11 7 2.8819 5.0099 -2.4903 12 14 0.8236 5.3342 -4.3161 13 1 1.9053 5.4435 -5.3276 14 1 -0.0544 4.1846 -4.6519 15 1 0.0222 6.5844 -4.3121 16 6 0.3631 4.9488 0.9948 17 6 1.4846 5.6883 1.7470 18 6 2.0858 6.0156 0.3700 19 6 2.2146 -1.2256 0.0005 20 6 2.2176 -2.1625 1.0138 21 6 3.0466 -3.2103 0.5860 22 6 3.5132 -2.8768 -0.6381 23 8 3.0117 -1.6842 -0.9872 24 1 -0.3633 0.1137 -1.0213 25 1 -0.3634 -0.9414 0.4123 26 1 -0.3634 0.8277 0.6091 27 1 3.2592 1.1795 0.1184 28 1 3.2749 4.9448 -1.6059 29 1 -0.4827 5.5857 0.7360 30 1 0.0614 4.0143 1.4680 31 1 2.1099 5.0313 2.3515 32 1 1.1413 6.5666 2.2936 33 1 3.1728 5.9412 0.3393 34 1 1.7128 6.9447 -0.0611 35 1 1.6844 -2.1022 1.9511 36 1 3.2727 -4.1130 1.1340 37 1 4.1824 -3.4754 -1.2382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263479292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -28.600159 kcal Electronic energy + Delta-G solvation = -21493.556158 eV Core-core repulsion = 18204.290437 eV Total energy + Delta-G solvation = -3289.265721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54927 -39.86822 -37.71417 -35.09744 -34.08718 -32.97218 -32.35791 -29.09060 -27.97838 -25.95324 -24.75910 -23.78268 -22.46208 -21.71347 -20.83600 -19.15570 -18.40608 -17.52005 -16.95381 -16.25966 -15.89399 -15.10569 -14.94883 -14.83578 -14.02240 -13.72444 -13.50623 -13.06175 -12.98186 -12.94287 -12.53287 -12.49233 -12.30295 -11.97537 -11.53793 -11.37567 -10.82410 -10.52368 -10.38736 -10.16846 -10.09778 -10.04299 -9.99710 -9.34350 -9.26116 -8.94288 -8.43378 -8.28668 -8.07564 -6.34625 -4.13129 0.92130 1.72044 2.49767 3.09423 3.44212 3.47158 3.65467 3.85442 3.98264 4.53199 4.75585 4.88126 5.03049 5.12140 5.33781 5.56681 5.57464 5.60612 5.70497 5.72126 5.73764 5.93422 5.98702 6.00159 6.19430 6.29866 6.31971 6.37074 6.47876 6.63126 6.68999 6.70945 6.87769 7.00820 7.10079 7.37939 7.72053 8.16103 8.43788 8.84399 9.02599 9.63458 11.03190 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.005372 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.609091 B = 5211.419571 C = 5928.254838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.012 3.988 3 C -0.151 4.151 4 C 0.493 3.507 5 O -0.490 6.490 6 O -0.344 6.344 7 C 0.210 3.790 8 C -0.595 4.595 9 H 0.058 0.942 10 C 0.031 3.969 11 N -0.895 5.895 12 Si 1.064 2.936 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.286 1.286 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.110 4.110 19 C 0.017 3.983 20 C -0.185 4.185 21 C -0.215 4.215 22 C -0.039 4.039 23 O -0.158 6.158 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.279 0.721 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -12.102 7.091 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.011 3.989 3 C -0.170 4.170 4 C 0.340 3.660 5 O -0.381 6.381 6 O -0.261 6.261 7 C 0.175 3.825 8 C -0.633 4.633 9 H 0.076 0.924 10 C -0.177 4.177 11 N -0.530 5.530 12 Si 0.892 3.108 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.212 1.212 16 C -0.182 4.182 17 C -0.187 4.187 18 C -0.148 4.148 19 C -0.033 4.033 20 C -0.205 4.205 21 C -0.234 4.234 22 C -0.108 4.108 23 O -0.053 6.053 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.361 -11.730 5.155 12.818 hybrid contribution -0.229 -0.383 1.715 1.772 sum 0.132 -12.113 6.870 13.926 Atomic orbital electron populations 1.21130 0.88564 1.02458 1.04369 1.19109 0.96059 0.88202 0.95551 1.21666 1.01168 0.90809 1.03407 1.19211 0.86087 0.84955 0.75769 1.90786 1.16024 1.88566 1.42701 1.86099 1.43692 1.14793 1.81477 1.20398 0.87885 0.79650 0.94518 1.22027 0.94800 1.54854 0.91604 0.92390 1.25822 0.95151 0.92975 1.03710 1.70698 1.10694 1.43821 1.27779 0.83624 0.75250 0.76637 0.75272 1.20757 1.21398 1.21243 1.23373 0.97477 0.99441 0.97953 1.22986 0.99054 0.99671 0.96955 1.22964 0.99473 0.98338 0.94052 1.19637 0.97884 0.96642 0.89149 1.22180 1.03905 0.93998 1.00374 1.21691 1.02978 1.01564 0.97126 1.24229 1.02228 0.86340 0.97973 1.84221 1.48994 1.31190 1.40869 0.89495 0.92605 0.88502 0.84933 0.90968 0.90072 0.92924 0.91299 0.92649 0.92386 0.89413 0.83018 0.83232 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 8.42 36.00 0.30 -1.41 16 2 C 0.01 0.20 5.77 -104.26 -0.60 -0.40 16 3 C -0.15 -2.89 9.60 -39.31 -0.38 -3.27 16 4 C 0.49 11.45 6.91 31.89 0.22 11.67 16 5 O -0.49 -11.96 11.23 -19.42 -0.22 -12.18 16 6 O -0.34 -8.66 9.00 -41.33 -0.37 -9.03 16 7 C 0.21 5.31 0.10 -90.96 -0.01 5.30 16 8 C -0.60 -16.84 7.32 -34.44 -0.25 -17.09 16 9 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.03 0.89 5.40 -17.82 -0.10 0.79 16 11 N -0.89 -26.76 13.51 55.43 0.75 -26.01 16 12 Si 1.06 25.65 29.90 -169.99 -5.08 20.57 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.14 -3.19 6.87 -25.83 -0.18 -3.37 16 17 C -0.15 -2.90 8.02 -25.83 -0.21 -3.10 16 18 C -0.11 -2.50 6.62 -25.92 -0.17 -2.67 16 19 C 0.02 0.25 6.34 -38.42 -0.24 0.01 16 20 C -0.19 -2.29 10.90 -38.90 -0.42 -2.72 16 21 C -0.21 -2.26 10.87 -39.90 -0.43 -2.70 16 22 C -0.04 -0.42 12.06 29.64 0.36 -0.07 16 23 O -0.16 -2.36 10.67 4.68 0.05 -2.31 16 24 H 0.09 1.46 8.01 -51.93 -0.42 1.05 16 25 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 26 H 0.10 1.66 6.21 -51.93 -0.32 1.33 16 27 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 28 H 0.28 8.30 5.74 -40.82 -0.23 8.06 16 29 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 30 H 0.05 1.15 7.26 -51.93 -0.38 0.77 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.32 7.74 -51.93 -0.40 0.92 16 34 H 0.09 1.99 8.09 -51.93 -0.42 1.57 16 35 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -32.45 316.37 -6.97 -39.42 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.75 Total: 3.81 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.11 Total: -19.04 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.75 Total: -26.01 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.54 Total: -23.51 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.45 -6.97 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263479292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.819 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds