Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35755 * 120.00018 * 2 1 4 4 C 1.41295 * 119.99687 * 352.73073 * 3 2 1 5 5 O 1.21705 * 120.00335 * 354.55757 * 4 3 2 6 6 O 1.35003 * 119.99728 * 174.55850 * 4 3 2 7 7 C 1.42901 * 116.99726 * 182.68703 * 6 4 3 8 8 C 1.50695 * 112.85463 * 294.68893 * 7 6 4 9 9 H 1.08000 * 120.00445 * 118.10844 * 8 7 6 10 10 C 1.37880 * 119.99998 * 298.11607 * 8 7 6 11 11 N 1.31512 * 120.00045 * 1.45816 * 10 8 7 12 12 Si 1.86796 * 120.00174 * 181.45679 * 10 8 7 13 13 H 1.48499 * 109.47540 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47294 * 299.99784 * 12 10 8 15 15 H 1.48503 * 109.47280 * 59.99658 * 12 10 8 16 16 C 1.53778 * 113.61545 * 65.88744 * 7 6 4 17 17 C 1.53954 * 87.02030 * 89.22544 * 16 7 6 18 18 C 1.53774 * 87.11162 * 25.36415 * 17 16 7 19 19 C 1.41525 * 120.00133 * 179.97438 * 2 1 3 20 20 C 1.37999 * 126.10734 * 294.71199 * 19 2 1 21 21 C 1.40289 * 106.52762 * 179.88507 * 20 19 2 22 22 C 1.35178 * 107.20475 * 0.38151 * 21 20 19 23 23 O 1.34009 * 109.04686 * 359.75731 * 22 21 20 24 24 H 1.08997 * 109.47124 * 83.64997 * 1 2 3 25 25 H 1.09003 * 109.47385 * 203.65039 * 1 2 3 26 26 H 1.09000 * 109.47307 * 323.64986 * 1 2 3 27 27 H 1.07996 * 120.00237 * 172.72955 * 3 2 1 28 28 H 0.97005 * 120.00082 * 355.08686 * 11 10 8 29 29 H 1.08997 * 113.62092 * 203.74889 * 16 7 6 30 30 H 1.09004 * 113.61401 * 334.65390 * 16 7 6 31 31 H 1.08998 * 113.53852 * 270.81246 * 17 16 7 32 32 H 1.09003 * 113.74288 * 139.95098 * 17 16 7 33 33 H 1.08996 * 113.61688 * 220.08917 * 18 17 16 34 34 H 1.09007 * 113.68848 * 89.19528 * 18 17 16 35 35 H 1.08005 * 126.74118 * 0.02562 * 20 19 2 36 36 H 1.07991 * 126.39432 * 180.17525 * 21 20 19 37 37 H 1.07998 * 125.47679 * 179.76257 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 1.4877 2.3944 -0.1548 5 8 0.2931 2.3862 -0.3871 6 8 2.1461 3.5679 -0.0452 7 6 1.3674 4.7612 -0.1545 8 6 0.7603 4.9406 -1.5220 9 1 -0.3133 4.9671 -1.6370 10 6 1.5753 5.0710 -2.6264 11 7 2.8819 5.0099 -2.4903 12 14 0.8236 5.3342 -4.3161 13 1 1.9053 5.4435 -5.3276 14 1 -0.0544 4.1846 -4.6519 15 1 0.0222 6.5844 -4.3121 16 6 0.3631 4.9488 0.9948 17 6 1.4846 5.6883 1.7470 18 6 2.0858 6.0156 0.3700 19 6 2.2146 -1.2256 0.0005 20 6 2.2176 -2.1625 1.0138 21 6 3.0466 -3.2103 0.5860 22 6 3.5132 -2.8768 -0.6381 23 8 3.0117 -1.6842 -0.9872 24 1 -0.3633 0.1137 -1.0213 25 1 -0.3634 -0.9414 0.4123 26 1 -0.3634 0.8277 0.6091 27 1 3.2592 1.1795 0.1184 28 1 3.2749 4.9448 -1.6059 29 1 -0.4827 5.5857 0.7360 30 1 0.0614 4.0143 1.4680 31 1 2.1099 5.0313 2.3515 32 1 1.1413 6.5666 2.2936 33 1 3.1728 5.9412 0.3393 34 1 1.7128 6.9447 -0.0611 35 1 1.6844 -2.1022 1.9511 36 1 3.2727 -4.1130 1.1340 37 1 4.1824 -3.4754 -1.2382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263479292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = -46.558950 kcal Electronic energy + Delta-G solvation = -21494.334909 eV Core-core repulsion = 18204.290437 eV Total energy + Delta-G solvation = -3290.044473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.53824 -41.66996 -39.43652 -36.64168 -35.80527 -34.50431 -33.93421 -30.29201 -29.29148 -27.95739 -26.55375 -25.28824 -24.15278 -22.63810 -22.27164 -20.48651 -20.19021 -19.45934 -18.11244 -17.79634 -17.17085 -16.79930 -16.73938 -16.09801 -15.71866 -15.55302 -15.24124 -14.53999 -14.28671 -14.10151 -14.06255 -13.88554 -13.50500 -13.39256 -13.21396 -12.88167 -12.74706 -12.34553 -12.27422 -12.02425 -11.92248 -11.78963 -11.11373 -10.99140 -10.83495 -10.64037 -10.48844 -10.07877 -9.32754 -8.58830 -6.37574 -0.44241 0.65430 1.47662 1.54234 1.61972 1.74743 1.94363 2.23235 2.38552 2.53076 3.19441 3.68748 3.74500 3.82822 3.91730 4.01472 4.07639 4.15470 4.22814 4.34554 4.52973 4.63998 4.72884 4.76625 4.87770 4.89747 4.91699 4.98941 5.02325 5.07329 5.09293 5.29948 5.37226 5.54958 5.58877 5.78021 6.05879 6.11317 6.25830 6.61597 7.17406 7.46037 8.78626 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.005372 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.609091 B = 5211.419571 C = 5928.254838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.058 3.942 3 C -0.196 4.196 4 C 0.488 3.512 5 O -0.516 6.516 6 O -0.358 6.358 7 C 0.184 3.816 8 C -0.606 4.606 9 H 0.039 0.961 10 C -0.014 4.014 11 N -0.919 5.919 12 Si 1.104 2.896 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.264 1.264 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.039 4.039 20 C -0.163 4.163 21 C -0.218 4.218 22 C -0.029 4.029 23 O -0.185 6.185 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.269 0.731 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -14.192 8.084 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.057 3.943 3 C -0.215 4.215 4 C 0.336 3.664 5 O -0.409 6.409 6 O -0.275 6.275 7 C 0.149 3.851 8 C -0.643 4.643 9 H 0.057 0.943 10 C -0.216 4.216 11 N -0.555 5.555 12 Si 0.926 3.074 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.189 1.189 16 C -0.179 4.179 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.088 4.088 20 C -0.182 4.182 21 C -0.236 4.236 22 C -0.097 4.097 23 O -0.082 6.082 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.155 0.845 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.189 0.811 36 H 0.202 0.798 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.443 -13.816 6.175 15.139 hybrid contribution -0.260 0.007 1.449 1.472 sum 0.183 -13.808 7.624 15.774 Atomic orbital electron populations 1.21133 0.88217 1.03741 1.03451 1.19314 0.96451 0.88393 0.90151 1.21515 1.01396 0.89976 1.08635 1.19843 0.86143 0.85418 0.74967 1.90758 1.16912 1.88780 1.44445 1.86070 1.44012 1.15458 1.81939 1.20644 0.89667 0.80576 0.94205 1.22252 0.93927 1.54499 0.93671 0.94279 1.27038 0.95055 0.92411 1.07088 1.70797 1.11402 1.46122 1.27193 0.83117 0.74925 0.77526 0.71791 1.20493 1.21184 1.18859 1.23309 0.97664 0.99737 0.97222 1.22848 0.97042 1.00536 0.95430 1.22917 0.98856 0.96930 0.96231 1.19503 1.00851 0.97214 0.91187 1.22572 1.02644 0.93025 0.99946 1.22130 1.02207 1.02179 0.97106 1.25202 1.00994 0.84910 0.98557 1.84198 1.49510 1.32982 1.41460 0.90651 0.88985 0.90060 0.84464 0.92029 0.90203 0.93190 0.90143 0.89193 0.93179 0.89990 0.81062 0.79812 0.74104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.43 8.42 71.24 0.60 -2.83 16 2 C 0.06 1.94 5.77 -19.63 -0.11 1.83 16 3 C -0.20 -7.78 9.60 22.45 0.22 -7.56 16 4 C 0.49 23.60 6.91 68.57 0.47 24.07 16 5 O -0.52 -26.30 11.23 19.16 0.22 -26.09 16 6 O -0.36 -18.72 9.00 -59.22 -0.53 -19.25 16 7 C 0.18 9.56 0.10 -11.02 0.00 9.56 16 8 C -0.61 -35.37 7.32 25.60 0.19 -35.18 16 9 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 10 C -0.01 -0.82 5.40 84.66 0.46 -0.36 16 11 N -0.92 -56.53 13.51 21.45 0.29 -56.24 16 12 Si 1.10 52.55 29.90 68.60 2.05 54.61 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 16 C -0.14 -6.28 6.87 31.18 0.21 -6.06 16 17 C -0.12 -4.55 8.02 31.18 0.25 -4.30 16 18 C -0.11 -5.11 6.62 31.12 0.21 -4.90 16 19 C -0.04 -1.11 6.34 23.02 0.15 -0.96 16 20 C -0.16 -3.53 10.90 22.71 0.25 -3.28 16 21 C -0.22 -3.70 10.87 22.06 0.24 -3.46 16 22 C -0.03 -0.53 12.06 67.11 0.81 0.28 16 23 O -0.19 -5.26 10.67 -6.17 -0.07 -5.33 16 24 H 0.08 2.59 8.01 -2.39 -0.02 2.57 16 25 H 0.09 2.17 8.05 -2.39 -0.02 2.15 16 26 H 0.08 2.84 6.21 -2.39 -0.01 2.82 16 27 H 0.14 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.27 16.63 5.74 -92.70 -0.53 16.10 16 29 H 0.08 3.49 8.09 -2.39 -0.02 3.48 16 30 H 0.05 2.20 7.26 -2.38 -0.02 2.19 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.05 2.33 7.74 -2.39 -0.02 2.31 16 34 H 0.08 3.77 8.09 -2.38 -0.02 3.75 16 35 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.18 1.82 8.06 -2.92 -0.02 1.80 16 37 H 0.24 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -73.27 316.37 7.20 -66.08 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.31 Total: 19.40 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 3.93 Total: -33.17 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.29 Total: -56.24 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.38 Total: -50.67 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.05 Total: 54.61 kcal Total: -73.27 7.20 -66.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263479292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.516 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds