Wall clock time and date at job start Mon Mar 30 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00340 * 2 1 4 4 H 1.48502 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47079 * 299.99805 * 3 2 1 6 6 H 1.48497 * 109.47289 * 60.00046 * 3 2 1 7 7 C 1.37885 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99660 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47335 * 60.00365 * 9 7 2 11 11 O 1.45205 * 109.47263 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00057 * 210.00305 * 11 9 7 13 13 O 1.20820 * 120.00061 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99448 * 179.97438 * 12 11 9 15 15 H 1.08999 * 115.55393 * 34.33151 * 14 12 11 16 16 C 1.52997 * 117.49714 * 248.61551 * 14 12 11 17 17 C 1.53000 * 60.00347 * 252.51395 * 16 14 12 18 18 H 1.09004 * 117.49237 * 107.48843 * 17 16 14 19 19 C 1.50696 * 117.50175 * 252.51187 * 17 16 14 20 20 C 1.34508 * 125.79076 * 188.62288 * 19 17 16 21 21 C 1.41379 * 106.84395 * 180.02562 * 20 19 17 22 22 C 1.34523 * 106.84035 * 359.97438 * 21 20 19 23 23 O 1.34302 * 108.41686 * 359.73657 * 22 21 20 24 24 C 1.52997 * 109.47391 * 300.00029 * 9 7 2 25 25 C 1.52998 * 117.50086 * 248.74830 * 24 9 7 26 26 C 1.53009 * 117.50118 * 180.08757 * 24 9 7 27 27 H 0.97008 * 119.99872 * 0.02562 * 1 2 3 28 28 H 1.09002 * 117.49910 * 145.02535 * 16 14 12 29 29 H 1.09002 * 117.49884 * 0.02562 * 16 14 12 30 30 H 1.08001 * 126.57812 * 0.03555 * 20 19 17 31 31 H 1.07996 * 126.58768 * 179.97438 * 21 20 19 32 32 H 1.07998 * 125.79031 * 180.02562 * 22 21 20 33 33 H 1.09003 * 115.54845 * 34.41798 * 24 9 7 34 34 H 1.09003 * 117.49624 * 359.97438 * 25 24 9 35 35 H 1.09002 * 117.50124 * 145.01485 * 25 24 9 36 36 H 1.08993 * 117.49802 * 214.98123 * 26 24 9 37 37 H 1.08998 * 117.49472 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5567 -0.8904 11 8 2.1944 -3.6029 -0.0005 12 6 1.8030 -4.7391 -0.5986 13 8 0.7083 -4.8092 -1.1049 14 6 2.7293 -5.9272 -0.6384 15 1 3.3691 -6.0540 0.2348 16 6 3.3012 -6.3317 -1.9986 17 6 2.2250 -7.1930 -1.3345 18 1 1.2234 -7.1662 -1.7637 19 6 2.6515 -8.5195 -0.7607 20 6 1.8288 -9.4743 -0.2907 21 6 2.6470 -10.5408 0.1474 22 6 3.9209 -10.1742 -0.0817 23 8 3.9172 -8.9516 -0.6375 24 6 0.3717 -2.5804 1.2490 25 6 0.7536 -3.6085 2.3158 26 6 -0.4768 -3.8400 1.4351 27 1 -0.4850 0.8401 -0.0004 28 1 4.3176 -6.7246 -2.0205 29 1 3.0078 -5.7382 -2.8646 30 1 0.7501 -9.4340 -0.2550 31 1 2.3135 -11.4713 0.5824 32 1 4.7976 -10.7650 0.1391 33 1 -0.0499 -1.6347 1.5895 34 1 1.6310 -4.2272 2.1273 35 1 0.5830 -3.3392 3.3582 36 1 -1.4564 -3.7229 1.8983 37 1 -0.4083 -4.6108 0.6675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:39 Heat of formation + Delta-G solvation = -18.179252 kcal Electronic energy + Delta-G solvation = -21006.242753 eV Core-core repulsion = 17717.428917 eV Total energy + Delta-G solvation = -3288.813837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.69009 -40.00388 -37.50933 -35.88472 -34.70891 -33.09536 -32.82354 -29.67364 -28.04967 -24.94732 -23.29705 -23.05694 -21.78393 -21.46084 -20.49095 -19.92352 -18.95635 -17.75940 -17.09691 -16.59413 -16.11334 -15.78555 -15.53932 -14.94769 -14.65221 -13.91605 -13.46949 -13.34543 -12.91980 -12.75685 -12.46523 -12.40584 -12.00973 -11.64648 -11.37204 -11.16536 -11.02785 -10.96197 -10.69072 -10.46164 -10.31898 -10.07031 -10.00103 -9.74929 -9.49970 -9.14723 -8.54049 -8.46256 -8.45783 -6.20688 -4.27745 1.53242 2.43937 2.74275 2.81382 3.22849 3.29662 3.33766 3.51522 3.85794 4.30019 4.47303 4.61213 4.77927 4.91191 4.93570 5.00735 5.12295 5.22868 5.51895 5.61480 5.71022 5.80676 5.85229 5.93950 5.96397 6.00390 6.08447 6.13927 6.37675 6.46047 6.67548 6.86458 7.01016 7.02929 7.17213 7.54909 7.57269 7.81408 8.09215 8.57821 8.85415 9.36842 10.86538 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.004013 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.545549 B = 6975.328373 C = 7385.929308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.518 4.518 8 H 0.071 0.929 9 C 0.248 3.752 10 H 0.053 0.947 11 O -0.345 6.345 12 C 0.484 3.516 13 O -0.514 6.514 14 C -0.147 4.147 15 H 0.133 0.867 16 C -0.135 4.135 17 C -0.054 4.054 18 H 0.149 0.851 19 C 0.023 3.977 20 C -0.202 4.202 21 C -0.213 4.213 22 C -0.045 4.045 23 O -0.175 6.175 24 C -0.117 4.117 25 C -0.194 4.194 26 C -0.210 4.210 27 H 0.266 0.734 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.202 0.798 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 -16.551 -0.345 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.195 3.805 10 H 0.071 0.929 11 O -0.260 6.260 12 C 0.327 3.673 13 O -0.405 6.405 14 C -0.166 4.166 15 H 0.151 0.849 16 C -0.172 4.172 17 C -0.072 4.072 18 H 0.167 0.833 19 C -0.027 4.027 20 C -0.221 4.221 21 C -0.232 4.232 22 C -0.112 4.112 23 O -0.071 6.071 24 C -0.135 4.135 25 C -0.231 4.231 26 C -0.247 4.247 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.219 0.781 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.562 -16.210 -0.565 17.147 hybrid contribution 0.013 0.645 0.348 0.733 sum 5.575 -15.564 -0.217 16.534 Atomic orbital electron populations 1.69990 1.05908 1.27235 1.49087 1.24907 0.95056 0.99305 0.94608 0.86246 0.80008 0.82336 0.77743 1.19418 1.20750 1.20710 1.20992 0.94033 0.88284 1.52282 0.91066 1.20196 0.85965 0.80256 0.94066 0.92925 1.86488 1.49144 1.21810 1.68604 1.22099 0.85513 0.84377 0.75349 1.90584 1.22299 1.83437 1.44155 1.21906 1.02451 0.92183 1.00061 0.84890 1.23122 0.98779 1.00778 0.94533 1.20581 1.00773 0.83421 1.02463 0.83323 1.21341 0.81215 0.96228 1.03935 1.21567 1.00932 0.94157 1.05407 1.21838 0.92964 1.01361 1.07051 1.24006 0.99715 0.85287 1.02206 1.83979 1.29508 1.30349 1.63276 1.23028 0.99269 0.93774 0.97466 1.22805 0.98579 1.05892 0.95869 1.23155 0.94497 1.03531 1.03511 0.92437 0.86882 0.86942 0.83247 0.83439 0.78104 0.85227 0.89810 0.90394 0.90501 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 11.59 55.43 0.64 -24.11 16 2 C 0.06 1.73 5.20 -17.82 -0.09 1.64 16 3 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.31 8.90 -34.44 -0.31 -14.61 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.25 6.51 2.41 -27.89 -0.07 6.44 16 10 H 0.05 1.54 7.16 -51.92 -0.37 1.16 16 11 O -0.34 -8.05 8.38 -39.25 -0.33 -8.38 16 12 C 0.48 9.83 6.69 36.01 0.24 10.07 16 13 O -0.51 -11.49 13.31 -18.75 -0.25 -11.74 16 14 C -0.15 -2.25 6.00 -91.77 -0.55 -2.81 16 15 H 0.13 1.91 8.14 -51.93 -0.42 1.48 16 16 C -0.14 -1.70 9.87 -26.73 -0.26 -1.97 16 17 C -0.05 -0.73 5.75 -91.77 -0.53 -1.25 16 18 H 0.15 2.01 7.67 -51.93 -0.40 1.61 16 19 C 0.02 0.29 6.80 -35.63 -0.24 0.05 16 20 C -0.20 -2.39 10.81 -39.71 -0.43 -2.82 16 21 C -0.21 -2.15 10.91 -39.70 -0.43 -2.58 16 22 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 23 O -0.17 -2.12 10.36 5.70 0.06 -2.06 16 24 C -0.12 -2.89 5.27 -90.62 -0.48 -3.37 16 25 C -0.19 -4.14 9.80 -26.69 -0.26 -4.40 16 26 C -0.21 -4.61 9.85 -26.69 -0.26 -4.87 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.11 1.22 7.96 -51.93 -0.41 0.81 16 29 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 3.49 6.46 -51.93 -0.34 3.15 16 34 H 0.08 1.75 6.90 -51.93 -0.36 1.39 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 2.11 5.37 -51.93 -0.28 1.83 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -30.40 319.23 -8.07 -38.46 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.66 Total: 7.78 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.32 Total: -20.56 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.64 Total: -24.11 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.52 Total: -22.17 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.40 -8.07 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.285 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds