Wall clock time and date at job start Mon Mar 30 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00340 * 2 1 4 4 H 1.48502 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47079 * 299.99805 * 3 2 1 6 6 H 1.48497 * 109.47289 * 60.00046 * 3 2 1 7 7 C 1.37885 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99660 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47335 * 60.00365 * 9 7 2 11 11 O 1.45205 * 109.47263 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00057 * 210.00305 * 11 9 7 13 13 O 1.20820 * 120.00061 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99448 * 179.97438 * 12 11 9 15 15 H 1.08999 * 115.55393 * 34.33151 * 14 12 11 16 16 C 1.52997 * 117.49714 * 248.61551 * 14 12 11 17 17 C 1.53000 * 60.00347 * 252.51395 * 16 14 12 18 18 H 1.09004 * 117.49237 * 107.48843 * 17 16 14 19 19 C 1.50696 * 117.50175 * 252.51187 * 17 16 14 20 20 C 1.34508 * 125.79076 * 188.62288 * 19 17 16 21 21 C 1.41379 * 106.84395 * 180.02562 * 20 19 17 22 22 C 1.34523 * 106.84035 * 359.97438 * 21 20 19 23 23 O 1.34302 * 108.41686 * 359.73657 * 22 21 20 24 24 C 1.52997 * 109.47391 * 300.00029 * 9 7 2 25 25 C 1.52998 * 117.50086 * 248.74830 * 24 9 7 26 26 C 1.53009 * 117.50118 * 180.08757 * 24 9 7 27 27 H 0.97008 * 119.99872 * 0.02562 * 1 2 3 28 28 H 1.09002 * 117.49910 * 145.02535 * 16 14 12 29 29 H 1.09002 * 117.49884 * 0.02562 * 16 14 12 30 30 H 1.08001 * 126.57812 * 0.03555 * 20 19 17 31 31 H 1.07996 * 126.58768 * 179.97438 * 21 20 19 32 32 H 1.07998 * 125.79031 * 180.02562 * 22 21 20 33 33 H 1.09003 * 115.54845 * 34.41798 * 24 9 7 34 34 H 1.09003 * 117.49624 * 359.97438 * 25 24 9 35 35 H 1.09002 * 117.50124 * 145.01485 * 25 24 9 36 36 H 1.08993 * 117.49802 * 214.98123 * 26 24 9 37 37 H 1.08998 * 117.49472 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5567 -0.8904 11 8 2.1944 -3.6029 -0.0005 12 6 1.8030 -4.7391 -0.5986 13 8 0.7083 -4.8092 -1.1049 14 6 2.7293 -5.9272 -0.6384 15 1 3.3691 -6.0540 0.2348 16 6 3.3012 -6.3317 -1.9986 17 6 2.2250 -7.1930 -1.3345 18 1 1.2234 -7.1662 -1.7637 19 6 2.6515 -8.5195 -0.7607 20 6 1.8288 -9.4743 -0.2907 21 6 2.6470 -10.5408 0.1474 22 6 3.9209 -10.1742 -0.0817 23 8 3.9172 -8.9516 -0.6375 24 6 0.3717 -2.5804 1.2490 25 6 0.7536 -3.6085 2.3158 26 6 -0.4768 -3.8400 1.4351 27 1 -0.4850 0.8401 -0.0004 28 1 4.3176 -6.7246 -2.0205 29 1 3.0078 -5.7382 -2.8646 30 1 0.7501 -9.4340 -0.2550 31 1 2.3135 -11.4713 0.5824 32 1 4.7976 -10.7650 0.1391 33 1 -0.0499 -1.6347 1.5895 34 1 1.6310 -4.2272 2.1273 35 1 0.5830 -3.3392 3.3582 36 1 -1.4564 -3.7229 1.8983 37 1 -0.4083 -4.6108 0.6675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263659154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:39 Heat of formation + Delta-G solvation = -33.458495 kcal Electronic energy + Delta-G solvation = -21006.905311 eV Core-core repulsion = 17717.428917 eV Total energy + Delta-G solvation = -3289.476394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.52633 -41.66804 -38.99804 -37.42423 -36.50366 -34.88612 -33.92115 -30.62621 -29.96813 -26.49565 -24.97432 -24.20099 -23.22344 -22.62132 -21.93999 -21.03291 -20.70536 -19.07258 -18.74661 -18.04112 -17.56913 -17.39665 -16.85585 -16.48061 -15.97046 -15.62882 -15.01392 -14.47293 -14.16567 -14.05013 -13.74556 -13.51953 -13.42060 -13.24517 -13.01222 -12.95870 -12.82288 -12.38868 -12.25369 -12.11981 -11.94831 -11.72359 -11.40424 -11.36826 -11.06430 -10.82358 -10.49571 -10.44769 -9.32299 -8.27542 -6.43957 0.64074 1.18261 1.41975 1.42523 1.55643 1.65141 1.85890 2.10345 2.41172 2.72255 3.00002 3.13198 3.41242 3.50836 3.72461 4.01420 4.05137 4.08674 4.16532 4.24261 4.26667 4.35160 4.56999 4.73382 4.78378 4.81105 4.90135 4.96936 4.99625 5.04416 5.19023 5.22151 5.27231 5.50711 5.55295 5.60194 5.87676 6.08735 6.19923 6.60534 6.95066 7.26580 8.80029 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.004013 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.545549 B = 6975.328373 C = 7385.929308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.254 3.746 10 H 0.009 0.991 11 O -0.354 6.354 12 C 0.479 3.521 13 O -0.541 6.541 14 C -0.161 4.161 15 H 0.145 0.855 16 C -0.117 4.117 17 C -0.041 4.041 18 H 0.141 0.859 19 C -0.003 4.003 20 C -0.209 4.209 21 C -0.227 4.227 22 C -0.034 4.034 23 O -0.185 6.185 24 C -0.147 4.147 25 C -0.168 4.168 26 C -0.200 4.200 27 H 0.270 0.730 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.243 0.757 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 -17.966 0.440 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.201 3.799 10 H 0.027 0.973 11 O -0.270 6.270 12 C 0.324 3.676 13 O -0.432 6.432 14 C -0.180 4.180 15 H 0.163 0.837 16 C -0.153 4.153 17 C -0.059 4.059 18 H 0.159 0.841 19 C -0.052 4.052 20 C -0.228 4.228 21 C -0.246 4.246 22 C -0.100 4.100 23 O -0.082 6.082 24 C -0.166 4.166 25 C -0.205 4.205 26 C -0.236 4.236 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.130 0.870 30 H 0.170 0.830 31 H 0.189 0.811 32 H 0.259 0.741 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.187 -17.650 0.218 19.058 hybrid contribution -0.515 0.951 0.077 1.084 sum 6.672 -16.699 0.294 17.985 Atomic orbital electron populations 1.70111 1.07394 1.28296 1.49179 1.25792 0.95902 1.02706 0.93688 0.85187 0.78830 0.77671 0.78045 1.18743 1.20154 1.19786 1.21265 0.93992 0.89602 1.53367 0.91516 1.19781 0.85948 0.81132 0.93030 0.97341 1.86471 1.48608 1.22374 1.69535 1.23028 0.86019 0.84482 0.74040 1.90561 1.23764 1.83780 1.45111 1.21897 1.02875 0.91019 1.02245 0.83688 1.23280 0.99931 0.99525 0.92599 1.20472 1.00780 0.83246 1.01389 0.84130 1.21167 0.81923 0.96222 1.05918 1.21866 1.01449 0.94721 1.04771 1.22177 0.93000 1.01904 1.07503 1.24878 1.01067 0.84217 0.99876 1.83966 1.29022 1.31514 1.63723 1.22744 1.01294 0.93956 0.98584 1.22875 0.98153 1.03209 0.96285 1.23145 0.95682 1.01361 1.03460 0.92132 0.84419 0.87013 0.82957 0.81139 0.74117 0.87676 0.89398 0.87852 0.88707 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.45 11.59 21.45 0.25 -52.20 16 2 C 0.02 1.06 5.20 84.66 0.44 1.50 16 3 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -31.02 8.90 25.60 0.23 -30.79 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.25 13.94 2.41 29.84 0.07 14.01 16 10 H 0.01 0.55 7.16 -2.38 -0.02 0.53 16 11 O -0.35 -17.02 8.38 -51.40 -0.43 -17.45 16 12 C 0.48 20.00 6.69 71.24 0.48 20.48 16 13 O -0.54 -25.17 13.31 21.98 0.29 -24.88 16 14 C -0.16 -4.90 6.00 -11.54 -0.07 -4.97 16 15 H 0.15 4.02 8.14 -2.39 -0.02 4.01 16 16 C -0.12 -2.81 9.87 30.59 0.30 -2.51 16 17 C -0.04 -1.07 5.75 -11.54 -0.07 -1.13 16 18 H 0.14 3.86 7.67 -2.38 -0.02 3.84 16 19 C 0.00 -0.07 6.80 24.83 0.17 0.10 16 20 C -0.21 -4.66 10.81 22.19 0.24 -4.42 16 21 C -0.23 -3.96 10.91 22.19 0.24 -3.72 16 22 C -0.03 -0.53 12.09 66.97 0.81 0.28 16 23 O -0.19 -4.04 10.36 -2.53 -0.03 -4.06 16 24 C -0.15 -7.47 5.27 -10.79 -0.06 -7.53 16 25 C -0.17 -7.04 9.80 30.62 0.30 -6.74 16 26 C -0.20 -8.80 9.85 30.62 0.30 -8.50 16 27 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 28 H 0.14 2.65 7.96 -2.39 -0.02 2.63 16 29 H 0.11 2.71 8.14 -2.39 -0.02 2.70 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.24 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.11 5.86 6.46 -2.39 -0.02 5.84 16 34 H 0.09 3.60 6.90 -2.39 -0.02 3.58 16 35 H 0.10 3.78 8.14 -2.39 -0.02 3.77 16 36 H 0.09 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.09 3.92 5.37 -2.39 -0.01 3.90 16 Total: -1.00 -67.87 319.23 6.58 -61.29 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 1.08 Total: 26.27 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.39 Total: -33.95 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.25 Total: -52.20 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.16 Total: -46.39 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -67.87 6.58 -61.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.829 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds