Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48502 * 109.47042 * 265.20892 * 3 2 1 5 5 H 1.48496 * 109.47058 * 25.20719 * 3 2 1 6 6 H 1.48493 * 109.47232 * 145.20758 * 3 2 1 7 7 C 1.37876 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99279 * 354.09237 * 7 2 1 9 9 C 1.50696 * 120.00242 * 174.10466 * 7 2 1 10 10 H 1.08991 * 109.47565 * 55.32211 * 9 7 2 11 11 O 1.45204 * 109.46665 * 295.32014 * 9 7 2 12 12 C 1.34234 * 116.99454 * 150.00154 * 11 9 7 13 13 O 1.20823 * 120.00565 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99513 * 180.02562 * 12 11 9 15 15 H 1.08998 * 115.55228 * 34.33179 * 14 12 11 16 16 C 1.53001 * 117.50021 * 248.62491 * 14 12 11 17 17 C 1.53004 * 117.49812 * 180.02562 * 14 12 11 18 18 H 1.08994 * 117.49500 * 359.97438 * 17 14 12 19 19 C 1.50702 * 117.49617 * 214.98032 * 17 14 12 20 20 C 1.34515 * 125.78486 * 119.99945 * 19 17 14 21 21 C 1.41388 * 106.83796 * 179.97438 * 20 19 17 22 22 C 1.34523 * 106.83926 * 0.02562 * 21 20 19 23 23 O 1.34299 * 125.78903 * 299.68887 * 19 17 14 24 24 C 1.53001 * 109.47283 * 175.32784 * 9 7 2 25 25 C 1.52999 * 117.50112 * 185.33811 * 24 9 7 26 26 C 1.53001 * 60.03246 * 107.49715 * 25 24 9 27 27 H 0.97006 * 119.99663 * 359.97438 * 1 2 3 28 28 H 1.09007 * 117.49606 * 359.97438 * 16 14 12 29 29 H 1.08997 * 117.50416 * 145.02235 * 16 14 12 30 30 H 1.08000 * 126.58565 * 0.03689 * 20 19 17 31 31 H 1.07995 * 126.58247 * 179.97438 * 21 20 19 32 32 H 1.07995 * 125.78749 * 180.02562 * 22 21 20 33 33 H 1.09002 * 115.55105 * 39.65720 * 24 9 7 34 34 H 1.08994 * 117.49716 * 214.99685 * 25 24 9 35 35 H 1.09001 * 117.49464 * 359.97438 * 25 24 9 36 36 H 1.08995 * 117.49909 * 107.50723 * 26 25 24 37 37 H 1.09000 * 117.49838 * 252.51895 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5979 1.9880 -1.3952 5 1 1.3996 2.6798 0.5963 6 1 3.4923 1.4716 0.7988 7 6 2.0046 -1.1940 -0.0005 8 1 1.4688 -2.1268 0.0953 9 6 3.5055 -1.1974 -0.1346 10 1 3.9413 -0.5713 0.6439 11 8 3.8761 -0.6768 -1.4384 12 6 5.0540 -0.0392 -1.5276 13 8 5.7524 0.0795 -0.5489 14 6 5.5052 0.5286 -2.8486 15 1 4.7130 0.9168 -3.4888 16 6 6.7035 -0.1349 -3.5305 17 6 6.8575 1.2434 -2.8854 18 1 7.4205 1.3033 -1.9540 19 6 6.9923 2.4305 -3.8040 20 6 7.2977 3.6854 -3.4280 21 6 7.3190 4.4713 -4.6031 22 6 7.0248 3.6497 -5.6268 23 8 6.8337 2.4136 -5.1375 24 6 4.0273 -2.6284 0.0101 25 6 5.5440 -2.8289 0.0289 26 6 4.7352 -2.9941 1.3172 27 1 -0.4850 0.8401 0.0004 28 1 7.1657 -0.9819 -3.0233 29 1 6.6997 -0.1835 -4.6193 30 1 7.4906 4.0269 -2.4217 31 1 7.5300 5.5285 -4.6666 32 1 6.9589 3.9346 -6.6664 33 1 3.4235 -3.3996 -0.4683 34 1 5.9380 -3.7319 -0.4372 35 1 6.1701 -1.9413 -0.0622 36 1 4.5973 -4.0058 1.6986 37 1 4.8290 -2.2151 2.0737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = -16.465585 kcal Electronic energy + Delta-G solvation = -21228.431527 eV Core-core repulsion = 17939.692001 eV Total energy + Delta-G solvation = -3288.739527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.66471 -39.95230 -37.51717 -36.09058 -35.00204 -33.07137 -32.74979 -29.67068 -28.65588 -24.89978 -23.27331 -23.01732 -21.78180 -21.73785 -20.45381 -19.86489 -19.31475 -17.79766 -17.24025 -16.86973 -16.12730 -15.85582 -15.63876 -14.96423 -14.51441 -14.06916 -13.60334 -13.16084 -13.13167 -12.89318 -12.65041 -12.53850 -12.04002 -11.80164 -11.58803 -11.36560 -11.06864 -10.90417 -10.87056 -10.54108 -10.26038 -9.97749 -9.88986 -9.71434 -9.47556 -9.43835 -9.05452 -8.78230 -8.43231 -6.36133 -4.42223 1.55795 2.46128 2.75008 2.83459 3.21789 3.25725 3.35364 3.48717 3.86883 4.25944 4.42068 4.55640 4.63533 4.80064 4.92934 4.97932 5.11917 5.25856 5.42368 5.53504 5.60046 5.63917 5.69903 5.81459 5.84423 5.96965 6.00354 6.03280 6.15944 6.24924 6.39946 6.47405 6.60028 6.72477 6.95662 7.05218 7.34281 7.62194 8.22832 8.64285 8.73207 9.25326 10.73212 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.005713 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.801405 B = 4899.822904 C = 5913.722321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.091 3.909 3 Si 0.868 3.132 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.508 4.508 8 H 0.089 0.911 9 C 0.204 3.796 10 H 0.052 0.948 11 O -0.345 6.345 12 C 0.479 3.521 13 O -0.525 6.525 14 C -0.153 4.153 15 H 0.133 0.867 16 C -0.133 4.133 17 C -0.057 4.057 18 H 0.149 0.851 19 C 0.023 3.977 20 C -0.203 4.203 21 C -0.212 4.212 22 C -0.045 4.045 23 O -0.174 6.174 24 C -0.139 4.139 25 C -0.201 4.201 26 C -0.170 4.170 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.203 0.797 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 4.088 -8.639 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.116 4.116 3 Si 0.694 3.306 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.544 4.544 8 H 0.107 0.893 9 C 0.153 3.847 10 H 0.070 0.930 11 O -0.261 6.261 12 C 0.323 3.677 13 O -0.417 6.417 14 C -0.173 4.173 15 H 0.151 0.849 16 C -0.170 4.170 17 C -0.075 4.075 18 H 0.166 0.834 19 C -0.027 4.027 20 C -0.222 4.222 21 C -0.231 4.231 22 C -0.112 4.112 23 O -0.071 6.071 24 C -0.158 4.158 25 C -0.238 4.238 26 C -0.207 4.207 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.219 0.781 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.253 3.926 -8.474 17.040 hybrid contribution 0.259 1.220 0.052 1.248 sum 14.511 5.146 -8.422 17.550 Atomic orbital electron populations 1.69908 1.06416 1.27947 1.46330 1.25051 0.94731 0.99524 0.92343 0.86935 0.80825 0.83179 0.79662 1.19388 1.21024 1.18255 1.21005 0.88091 0.95410 1.49864 0.89257 1.20769 0.95900 0.88610 0.79449 0.93019 1.87016 1.33215 1.63764 1.42090 1.22312 0.81162 0.75711 0.88537 1.90523 1.55525 1.57145 1.38506 1.22077 0.93055 1.04777 0.97341 0.84920 1.23079 0.97862 0.95060 1.00963 1.20575 0.99691 0.88667 0.98541 0.83378 1.21353 1.04661 0.95931 0.80795 1.21568 1.07993 0.92409 1.00259 1.21830 1.07859 1.01069 0.92391 1.24007 1.05839 0.81517 0.99842 1.83974 1.69723 1.32027 1.21344 1.22628 0.92908 0.99509 1.00706 1.23158 0.95404 1.03036 1.02169 1.22800 1.04727 1.01747 0.91417 0.91894 0.87070 0.86921 0.83300 0.83424 0.78066 0.87958 0.89993 0.87906 0.89423 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.76 13.96 55.43 0.77 -24.99 16 2 C 0.09 2.60 5.47 -17.82 -0.10 2.50 16 3 Si 0.87 22.14 25.98 -169.99 -4.42 17.72 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.64 6.52 56.52 0.37 -6.27 16 7 C -0.51 -14.24 9.32 -34.44 -0.32 -14.56 16 8 H 0.09 2.63 7.99 -52.49 -0.42 2.21 16 9 C 0.20 5.03 1.52 -27.88 -0.04 4.99 16 10 H 0.05 1.36 5.57 -51.93 -0.29 1.07 16 11 O -0.34 -8.24 8.56 -39.27 -0.34 -8.58 16 12 C 0.48 10.07 6.50 36.01 0.23 10.31 16 13 O -0.53 -11.59 13.20 -18.75 -0.25 -11.84 16 14 C -0.15 -2.57 6.01 -91.77 -0.55 -3.12 16 15 H 0.13 2.21 8.14 -51.93 -0.42 1.79 16 16 C -0.13 -1.72 9.87 -26.75 -0.26 -1.98 16 17 C -0.06 -0.81 5.75 -91.79 -0.53 -1.34 16 18 H 0.15 2.08 7.67 -51.93 -0.40 1.68 16 19 C 0.02 0.31 6.80 -35.62 -0.24 0.07 16 20 C -0.20 -2.63 10.81 -39.70 -0.43 -3.05 16 21 C -0.21 -2.33 10.91 -39.70 -0.43 -2.76 16 22 C -0.04 -0.46 12.09 29.42 0.36 -0.11 16 23 O -0.17 -2.28 10.36 5.72 0.06 -2.22 16 24 C -0.14 -2.94 5.30 -90.58 -0.48 -3.42 16 25 C -0.20 -3.65 9.82 -26.73 -0.26 -3.92 16 26 C -0.17 -3.10 10.18 -26.69 -0.27 -3.37 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.11 1.35 8.14 -51.92 -0.42 0.92 16 29 H 0.11 1.27 7.96 -51.93 -0.41 0.86 16 30 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.10 2.13 8.14 -51.93 -0.42 1.71 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 1.99 5.58 -51.93 -0.29 1.70 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.70 8.08 -51.93 -0.42 1.28 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -31.48 319.18 -7.47 -38.95 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.78 Total: 5.91 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.33 Total: -19.77 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.77 Total: -24.99 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.52 Total: -22.64 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.42 Total: 17.72 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.48 -7.47 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.484 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds