Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48502 * 109.47042 * 265.20892 * 3 2 1 5 5 H 1.48496 * 109.47058 * 25.20719 * 3 2 1 6 6 H 1.48493 * 109.47232 * 145.20758 * 3 2 1 7 7 C 1.37876 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99279 * 354.09237 * 7 2 1 9 9 C 1.50696 * 120.00242 * 174.10466 * 7 2 1 10 10 H 1.08991 * 109.47565 * 55.32211 * 9 7 2 11 11 O 1.45204 * 109.46665 * 295.32014 * 9 7 2 12 12 C 1.34234 * 116.99454 * 150.00154 * 11 9 7 13 13 O 1.20823 * 120.00565 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99513 * 180.02562 * 12 11 9 15 15 H 1.08998 * 115.55228 * 34.33179 * 14 12 11 16 16 C 1.53001 * 117.50021 * 248.62491 * 14 12 11 17 17 C 1.53004 * 117.49812 * 180.02562 * 14 12 11 18 18 H 1.08994 * 117.49500 * 359.97438 * 17 14 12 19 19 C 1.50702 * 117.49617 * 214.98032 * 17 14 12 20 20 C 1.34515 * 125.78486 * 119.99945 * 19 17 14 21 21 C 1.41388 * 106.83796 * 179.97438 * 20 19 17 22 22 C 1.34523 * 106.83926 * 0.02562 * 21 20 19 23 23 O 1.34299 * 125.78903 * 299.68887 * 19 17 14 24 24 C 1.53001 * 109.47283 * 175.32784 * 9 7 2 25 25 C 1.52999 * 117.50112 * 185.33811 * 24 9 7 26 26 C 1.53001 * 60.03246 * 107.49715 * 25 24 9 27 27 H 0.97006 * 119.99663 * 359.97438 * 1 2 3 28 28 H 1.09007 * 117.49606 * 359.97438 * 16 14 12 29 29 H 1.08997 * 117.50416 * 145.02235 * 16 14 12 30 30 H 1.08000 * 126.58565 * 0.03689 * 20 19 17 31 31 H 1.07995 * 126.58247 * 179.97438 * 21 20 19 32 32 H 1.07995 * 125.78749 * 180.02562 * 22 21 20 33 33 H 1.09002 * 115.55105 * 39.65720 * 24 9 7 34 34 H 1.08994 * 117.49716 * 214.99685 * 25 24 9 35 35 H 1.09001 * 117.49464 * 359.97438 * 25 24 9 36 36 H 1.08995 * 117.49909 * 107.50723 * 26 25 24 37 37 H 1.09000 * 117.49838 * 252.51895 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5979 1.9880 -1.3952 5 1 1.3996 2.6798 0.5963 6 1 3.4923 1.4716 0.7988 7 6 2.0046 -1.1940 -0.0005 8 1 1.4688 -2.1268 0.0953 9 6 3.5055 -1.1974 -0.1346 10 1 3.9413 -0.5713 0.6439 11 8 3.8761 -0.6768 -1.4384 12 6 5.0540 -0.0392 -1.5276 13 8 5.7524 0.0795 -0.5489 14 6 5.5052 0.5286 -2.8486 15 1 4.7130 0.9168 -3.4888 16 6 6.7035 -0.1349 -3.5305 17 6 6.8575 1.2434 -2.8854 18 1 7.4205 1.3033 -1.9540 19 6 6.9923 2.4305 -3.8040 20 6 7.2977 3.6854 -3.4280 21 6 7.3190 4.4713 -4.6031 22 6 7.0248 3.6497 -5.6268 23 8 6.8337 2.4136 -5.1375 24 6 4.0273 -2.6284 0.0101 25 6 5.5440 -2.8289 0.0289 26 6 4.7352 -2.9941 1.3172 27 1 -0.4850 0.8401 0.0004 28 1 7.1657 -0.9819 -3.0233 29 1 6.6997 -0.1835 -4.6193 30 1 7.4906 4.0269 -2.4217 31 1 7.5300 5.5285 -4.6666 32 1 6.9589 3.9346 -6.6664 33 1 3.4235 -3.3996 -0.4683 34 1 5.9380 -3.7319 -0.4372 35 1 6.1701 -1.9413 -0.0622 36 1 4.5973 -4.0058 1.6986 37 1 4.8290 -2.2151 2.0737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263659155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = -33.658659 kcal Electronic energy + Delta-G solvation = -21229.177075 eV Core-core repulsion = 17939.692001 eV Total energy + Delta-G solvation = -3289.485074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.56655 -41.61652 -38.97461 -37.53424 -36.71593 -34.90563 -33.96534 -30.87043 -30.36358 -26.42437 -24.90871 -24.22778 -23.21634 -22.66684 -21.80313 -21.15265 -20.91200 -19.31310 -19.06300 -18.14381 -17.54995 -17.50734 -16.87444 -16.35647 -15.98641 -15.69306 -15.21807 -14.78577 -14.39646 -14.21513 -13.79337 -13.57403 -13.48999 -13.37889 -13.32598 -12.96878 -12.83779 -12.36634 -12.27455 -12.05889 -11.89455 -11.74750 -11.39931 -11.31285 -11.05915 -10.97006 -10.86681 -10.78636 -9.36409 -8.56074 -6.65509 0.59875 1.12551 1.16245 1.21664 1.27689 1.60051 1.80060 2.03982 2.13661 2.69000 2.91998 2.98900 3.40786 3.48988 3.72819 3.87101 4.00039 4.05247 4.07214 4.12286 4.23494 4.30370 4.44717 4.57242 4.73610 4.77096 4.81792 4.84519 4.96606 4.98386 4.99729 5.14595 5.25341 5.30098 5.31102 5.55893 5.82162 6.08844 6.15377 6.44973 6.93450 7.05872 8.57732 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.005713 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.801405 B = 4899.822904 C = 5913.722321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.049 3.951 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.212 3.788 10 H 0.034 0.966 11 O -0.362 6.362 12 C 0.475 3.525 13 O -0.539 6.539 14 C -0.180 4.180 15 H 0.130 0.870 16 C -0.104 4.104 17 C -0.045 4.045 18 H 0.147 0.853 19 C -0.006 4.006 20 C -0.212 4.212 21 C -0.226 4.226 22 C -0.035 4.035 23 O -0.186 6.186 24 C -0.171 4.171 25 C -0.177 4.177 26 C -0.159 4.159 27 H 0.276 0.724 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.153 0.847 31 H 0.172 0.828 32 H 0.243 0.757 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 4.662 -10.137 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.155 4.155 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.160 3.840 10 H 0.052 0.948 11 O -0.278 6.278 12 C 0.321 3.679 13 O -0.431 6.431 14 C -0.199 4.199 15 H 0.148 0.852 16 C -0.140 4.140 17 C -0.063 4.063 18 H 0.164 0.836 19 C -0.055 4.055 20 C -0.232 4.232 21 C -0.245 4.245 22 C -0.101 4.101 23 O -0.082 6.082 24 C -0.190 4.190 25 C -0.214 4.214 26 C -0.195 4.195 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.171 0.829 31 H 0.189 0.811 32 H 0.259 0.741 33 H 0.118 0.882 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.660 4.506 -9.974 19.933 hybrid contribution -0.402 1.060 0.462 1.224 sum 16.258 5.565 -9.512 19.641 Atomic orbital electron populations 1.69982 1.07536 1.28899 1.48353 1.25660 0.95315 1.02173 0.92302 0.86188 0.79591 0.80488 0.79713 1.18929 1.19488 1.18961 1.21179 0.90073 0.94397 1.50079 0.91989 1.20396 0.93811 0.90625 0.79179 0.94841 1.86887 1.35239 1.64775 1.40947 1.22975 0.79922 0.74920 0.90112 1.90506 1.55570 1.57554 1.39486 1.22014 0.94561 1.07865 0.95506 0.85220 1.23269 0.93915 0.94768 1.02077 1.20538 0.96927 0.89832 0.98962 0.83583 1.21278 1.06906 0.96002 0.81350 1.21894 1.07264 0.92675 1.01330 1.22179 1.08256 1.02362 0.91720 1.24893 1.03402 0.80325 1.01516 1.83961 1.69968 1.33412 1.20902 1.22486 0.95202 0.97256 1.04006 1.23177 0.92777 1.03812 1.01643 1.22939 1.02935 1.03081 0.90593 0.91441 0.85907 0.84739 0.82926 0.81072 0.74057 0.88164 0.86765 0.89076 0.86393 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.43 13.96 21.45 0.30 -55.13 16 2 C 0.05 2.88 5.47 84.65 0.46 3.35 16 3 Si 0.92 46.49 25.98 68.60 1.78 48.28 16 4 H -0.26 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -13.60 6.52 99.48 0.65 -12.95 16 7 C -0.52 -30.29 9.32 25.60 0.24 -30.05 16 8 H 0.06 3.84 7.99 -2.91 -0.02 3.82 16 9 C 0.21 10.65 1.52 29.85 0.05 10.70 16 10 H 0.03 1.80 5.57 -2.39 -0.01 1.79 16 11 O -0.36 -17.48 8.56 -51.46 -0.44 -17.93 16 12 C 0.48 19.86 6.50 71.24 0.46 20.32 16 13 O -0.54 -23.63 13.20 21.97 0.29 -23.33 16 14 C -0.18 -5.86 6.01 -11.54 -0.07 -5.93 16 15 H 0.13 4.26 8.14 -2.39 -0.02 4.25 16 16 C -0.10 -2.44 9.87 30.58 0.30 -2.14 16 17 C -0.04 -1.20 5.75 -11.55 -0.07 -1.27 16 18 H 0.15 3.94 7.67 -2.39 -0.02 3.92 16 19 C -0.01 -0.15 6.80 24.83 0.17 0.02 16 20 C -0.21 -5.13 10.81 22.19 0.24 -4.89 16 21 C -0.23 -4.34 10.91 22.19 0.24 -4.10 16 22 C -0.03 -0.61 12.09 66.97 0.81 0.20 16 23 O -0.19 -4.38 10.36 -2.47 -0.03 -4.41 16 24 C -0.17 -7.19 5.30 -10.77 -0.06 -7.25 16 25 C -0.18 -6.10 9.82 30.59 0.30 -5.80 16 26 C -0.16 -5.55 10.18 30.62 0.31 -5.24 16 27 H 0.28 15.59 8.31 -92.70 -0.77 14.82 16 28 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.13 2.60 7.96 -2.39 -0.02 2.58 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.24 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 34 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.09 3.39 5.58 -2.39 -0.01 3.37 16 36 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.08 3.04 8.08 -2.39 -0.02 3.02 16 Total: -1.00 -70.01 319.18 6.32 -63.70 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 1.02 Total: 20.91 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.39 Total: -32.08 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.30 Total: -55.13 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -0.18 Total: -45.67 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.78 Total: 48.28 kcal Total: -70.01 6.32 -63.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.037 kcal (2) G-P(sol) polarization free energy of solvation -70.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds