Wall clock time and date at job start Mon Mar 30 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39569 * 120.47591 * 310.50338 * 3 2 1 5 5 N 1.31675 * 120.67656 * 179.74715 * 4 3 2 6 6 C 1.32513 * 121.80784 * 0.56392 * 5 4 3 7 7 N 1.38718 * 119.55159 * 179.70432 * 6 5 4 8 8 C 1.46897 * 110.99910 * 359.73414 * 7 6 5 9 9 C 1.53247 * 109.33862 * 187.24973 * 8 7 6 10 10 N 1.47074 * 108.51990 * 306.16776 * 9 8 7 11 11 C 1.36942 * 120.88247 * 231.18498 * 10 9 8 12 12 H 1.08002 * 119.99420 * 27.10940 * 11 10 9 13 13 C 1.38813 * 120.00143 * 207.11011 * 11 10 9 14 14 N 1.31617 * 119.99715 * 16.76771 * 13 11 10 15 15 Si 1.86795 * 119.99947 * 196.77399 * 13 11 10 16 16 H 1.48494 * 109.47132 * 179.97438 * 15 13 11 17 17 H 1.48507 * 109.47079 * 299.99798 * 15 13 11 18 18 H 1.48501 * 109.47054 * 59.99515 * 15 13 11 19 19 C 1.47078 * 118.23813 * 51.45896 * 10 9 8 20 20 C 1.46903 * 110.99841 * 124.03307 * 7 6 5 21 21 C 1.39545 * 120.89715 * 359.43315 * 6 5 4 22 22 F 1.35102 * 120.39227 * 180.29122 * 21 6 5 23 23 C 1.38055 * 119.21787 * 0.27600 * 21 6 5 24 24 H 1.07995 * 119.65791 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.49264 * 67.29093 * 8 7 6 26 26 H 1.09003 * 109.51682 * 307.22189 * 8 7 6 27 27 H 1.09000 * 109.62236 * 186.45985 * 9 8 7 28 28 H 1.08996 * 109.62383 * 65.88170 * 9 8 7 29 29 H 0.97002 * 119.99529 * 179.97438 * 14 13 11 30 30 H 1.09003 * 109.62879 * 68.24716 * 19 10 9 31 31 H 1.09001 * 109.63018 * 188.82828 * 19 10 9 32 32 H 1.09007 * 109.49038 * 292.70948 * 20 7 6 33 33 H 1.08997 * 109.49035 * 52.78849 * 20 7 6 34 34 H 1.07998 * 120.82557 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2763 -0.7803 0.9146 5 7 4.5930 -0.7865 0.9149 6 6 5.2951 -0.0519 0.0643 7 7 6.6810 -0.0895 0.1099 8 6 7.1485 -0.9940 1.1688 9 6 8.6698 -0.8704 1.3068 10 7 9.2782 -1.0919 -0.0137 11 6 10.2949 -1.9947 -0.1767 12 1 10.3791 -2.8394 0.4910 13 6 11.2172 -1.8241 -1.2000 14 7 11.3276 -0.6572 -1.7986 15 14 12.3016 -3.2507 -1.7274 16 1 13.1934 -2.8130 -2.8310 17 1 13.1234 -3.7003 -0.5749 18 1 11.4496 -4.3733 -2.1956 19 6 8.7698 -0.3137 -1.1535 20 6 7.2407 -0.4635 -1.1958 21 6 4.6592 0.7547 -0.8803 22 9 5.3851 1.4950 -1.7465 23 6 3.2796 0.7870 -0.9195 24 1 2.7388 -1.3891 1.6264 25 1 6.8889 -2.0208 0.9110 26 1 6.6746 -0.7251 2.1129 27 1 9.0357 -1.6195 2.0089 28 1 8.9250 0.1269 1.6650 29 1 11.9724 -0.5379 -2.5134 30 1 9.0345 0.7361 -1.0273 31 1 9.2020 -0.6946 -2.0789 32 1 6.9798 -1.4977 -1.4207 33 1 6.8336 0.1907 -1.9668 34 1 2.7607 1.4017 -1.6401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001306952648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:52 Heat of formation + Delta-G solvation = 70.657598 kcal Electronic energy + Delta-G solvation = -20852.476088 eV Core-core repulsion = 17508.639703 eV Total energy + Delta-G solvation = -3343.836385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.03444 -40.70582 -38.25331 -36.70436 -34.68873 -32.66338 -31.73100 -30.31662 -29.95499 -26.82471 -24.39442 -24.16271 -22.66290 -22.34562 -19.59878 -19.38049 -17.74683 -17.57493 -16.56117 -16.33059 -15.91404 -14.96202 -14.77470 -14.59802 -14.20807 -14.04614 -13.72575 -13.62593 -13.47505 -13.27075 -13.22691 -12.95293 -12.50550 -12.43989 -11.59012 -11.20635 -10.81677 -10.73079 -10.54144 -10.34948 -10.21134 -9.97901 -9.85540 -9.76572 -9.64925 -8.59282 -8.02859 -6.80296 -5.87488 -3.29828 0.29938 0.78379 2.35318 2.62969 3.30766 3.34715 3.40707 3.41522 3.49940 3.64517 4.08147 4.16346 4.38629 4.43210 4.70741 5.12423 5.28372 5.31025 5.36810 5.49604 5.66963 5.69608 5.93832 6.00732 6.07381 6.18068 6.30933 6.46258 6.70990 6.92395 7.16855 7.18101 7.25049 7.49119 7.65652 7.71850 8.32992 9.10540 9.73089 10.30537 11.21838 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.036340 B = 0.004163 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.307412 B = 6724.933618 C = 7010.671490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.268 3.732 3 C -0.110 4.110 4 C 0.182 3.818 5 N -0.499 5.499 6 C 0.334 3.666 7 N -0.460 5.460 8 C 0.053 3.947 9 C 0.143 3.857 10 N -0.596 5.596 11 C -0.257 4.257 12 H 0.068 0.932 13 C 0.003 3.997 14 N -0.903 5.903 15 Si 0.905 3.095 16 H -0.290 1.290 17 H -0.282 1.282 18 H -0.284 1.284 19 C 0.179 3.821 20 C 0.024 3.976 21 C 0.025 3.975 22 F -0.115 7.115 23 C -0.039 4.039 24 H 0.171 0.829 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.256 0.744 30 H 0.033 0.967 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 1.707 2.431 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.047 4.047 3 C -0.118 4.118 4 C 0.019 3.981 5 N -0.213 5.213 6 C 0.098 3.902 7 N -0.174 5.174 8 C -0.075 4.075 9 C 0.016 3.984 10 N -0.319 5.319 11 C -0.386 4.386 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.548 5.548 15 Si 0.735 3.265 16 H -0.216 1.216 17 H -0.208 1.208 18 H -0.210 1.210 19 C 0.052 3.948 20 C -0.101 4.101 21 C 0.000 4.000 22 F -0.093 7.093 23 C -0.067 4.067 24 H 0.188 0.812 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.444 1.713 2.954 14.842 hybrid contribution 0.443 -0.519 -1.160 1.346 sum -14.001 1.194 1.793 14.166 Atomic orbital electron populations 1.81278 1.11797 1.08458 1.08036 1.25223 0.92013 0.93696 0.93802 1.16567 0.85591 1.06494 1.03168 1.22809 0.88884 0.92752 0.93674 1.67967 1.07742 1.20352 1.25224 1.20607 0.91850 0.89130 0.88646 1.58809 1.00325 1.48663 1.09575 1.22703 0.98459 0.93686 0.92646 1.21104 0.88891 0.98992 0.89414 1.44177 1.39460 1.46516 1.01747 1.19160 1.03365 1.01357 1.14709 0.91411 1.25055 0.97180 0.96357 1.00942 1.69994 1.37154 1.20956 1.26648 0.86333 0.80054 0.81992 0.78165 1.21573 1.20813 1.21001 1.21018 0.84728 0.95438 0.93594 1.23513 1.01383 0.99230 0.86007 1.17790 0.89121 0.98697 0.94417 1.91514 1.76705 1.74215 1.66899 1.21399 0.91699 0.96498 0.97141 0.81181 0.92870 0.90195 0.91660 0.95448 0.93381 0.94887 0.88376 0.93438 0.89678 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.12 18.54 41.84 0.78 -4.34 16 2 C 0.27 2.70 15.37 -22.47 -0.35 2.35 16 3 C -0.11 -1.03 5.75 -106.67 -0.61 -1.64 16 4 C 0.18 1.74 10.91 -17.12 -0.19 1.55 16 5 N -0.50 -6.40 8.62 -12.06 -0.10 -6.50 16 6 C 0.33 4.79 6.41 -155.05 -0.99 3.80 16 7 N -0.46 -7.82 4.59 -172.54 -0.79 -8.61 16 8 C 0.05 0.89 4.81 -3.70 -0.02 0.88 16 9 C 0.14 2.85 6.69 -3.60 -0.02 2.83 16 10 N -0.60 -14.29 3.03 -171.73 -0.52 -14.81 16 11 C -0.26 -6.75 9.63 -15.06 -0.14 -6.89 16 12 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 13 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 14 N -0.90 -25.21 11.15 55.49 0.62 -24.60 16 15 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.18 4.05 5.44 -3.37 -0.02 4.03 16 20 C 0.02 0.45 5.33 -3.46 -0.02 0.43 16 21 C 0.02 0.31 6.95 -39.16 -0.27 0.04 16 22 F -0.11 -1.59 14.74 2.25 0.03 -1.56 16 23 C -0.04 -0.38 9.88 -38.85 -0.38 -0.76 16 24 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 25 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 26 H 0.08 1.22 7.64 -51.93 -0.40 0.83 16 27 H 0.07 1.24 7.95 -51.93 -0.41 0.83 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 2.46 6.13 -51.93 -0.32 2.14 16 32 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.09 1.42 5.48 -51.93 -0.28 1.14 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 295.76 15.07 4.46 4.46 Total: -1.00 -29.06 295.76 -7.16 -36.22 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.50 Total: -2.80 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -3.11 Total: 6.62 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.02 Total: -58.86 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.03 Total: -1.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.06 -7.16 -36.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001306952648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.883 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds