Wall clock time and date at job start Mon Mar 30 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39569 * 120.47591 * 310.50338 * 3 2 1 5 5 N 1.31675 * 120.67656 * 179.74715 * 4 3 2 6 6 C 1.32513 * 121.80784 * 0.56392 * 5 4 3 7 7 N 1.38718 * 119.55159 * 179.70432 * 6 5 4 8 8 C 1.46897 * 110.99910 * 359.73414 * 7 6 5 9 9 C 1.53247 * 109.33862 * 187.24973 * 8 7 6 10 10 N 1.47074 * 108.51990 * 306.16776 * 9 8 7 11 11 C 1.36942 * 120.88247 * 231.18498 * 10 9 8 12 12 H 1.08002 * 119.99420 * 27.10940 * 11 10 9 13 13 C 1.38813 * 120.00143 * 207.11011 * 11 10 9 14 14 N 1.31617 * 119.99715 * 16.76771 * 13 11 10 15 15 Si 1.86795 * 119.99947 * 196.77399 * 13 11 10 16 16 H 1.48494 * 109.47132 * 179.97438 * 15 13 11 17 17 H 1.48507 * 109.47079 * 299.99798 * 15 13 11 18 18 H 1.48501 * 109.47054 * 59.99515 * 15 13 11 19 19 C 1.47078 * 118.23813 * 51.45896 * 10 9 8 20 20 C 1.46903 * 110.99841 * 124.03307 * 7 6 5 21 21 C 1.39545 * 120.89715 * 359.43315 * 6 5 4 22 22 F 1.35102 * 120.39227 * 180.29122 * 21 6 5 23 23 C 1.38055 * 119.21787 * 0.27600 * 21 6 5 24 24 H 1.07995 * 119.65791 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.49264 * 67.29093 * 8 7 6 26 26 H 1.09003 * 109.51682 * 307.22189 * 8 7 6 27 27 H 1.09000 * 109.62236 * 186.45985 * 9 8 7 28 28 H 1.08996 * 109.62383 * 65.88170 * 9 8 7 29 29 H 0.97002 * 119.99529 * 179.97438 * 14 13 11 30 30 H 1.09003 * 109.62879 * 68.24716 * 19 10 9 31 31 H 1.09001 * 109.63018 * 188.82828 * 19 10 9 32 32 H 1.09007 * 109.49038 * 292.70948 * 20 7 6 33 33 H 1.08997 * 109.49035 * 52.78849 * 20 7 6 34 34 H 1.07998 * 120.82557 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2763 -0.7803 0.9146 5 7 4.5930 -0.7865 0.9149 6 6 5.2951 -0.0519 0.0643 7 7 6.6810 -0.0895 0.1099 8 6 7.1485 -0.9940 1.1688 9 6 8.6698 -0.8704 1.3068 10 7 9.2782 -1.0919 -0.0137 11 6 10.2949 -1.9947 -0.1767 12 1 10.3791 -2.8394 0.4910 13 6 11.2172 -1.8241 -1.2000 14 7 11.3276 -0.6572 -1.7986 15 14 12.3016 -3.2507 -1.7274 16 1 13.1934 -2.8130 -2.8310 17 1 13.1234 -3.7003 -0.5749 18 1 11.4496 -4.3733 -2.1956 19 6 8.7698 -0.3137 -1.1535 20 6 7.2407 -0.4635 -1.1958 21 6 4.6592 0.7547 -0.8803 22 9 5.3851 1.4950 -1.7465 23 6 3.2796 0.7870 -0.9195 24 1 2.7388 -1.3891 1.6264 25 1 6.8889 -2.0208 0.9110 26 1 6.6746 -0.7251 2.1129 27 1 9.0357 -1.6195 2.0089 28 1 8.9250 0.1269 1.6650 29 1 11.9724 -0.5379 -2.5134 30 1 9.0345 0.7361 -1.0273 31 1 9.2020 -0.6946 -2.0789 32 1 6.9798 -1.4977 -1.4207 33 1 6.8336 0.1907 -1.9668 34 1 2.7607 1.4017 -1.6401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001306952648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:52 Heat of formation + Delta-G solvation = 53.304642 kcal Electronic energy + Delta-G solvation = -20853.228569 eV Core-core repulsion = 17508.639703 eV Total energy + Delta-G solvation = -3344.588865 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.03892 -41.72394 -39.56301 -37.70231 -36.26369 -33.72370 -33.34536 -31.74486 -31.31387 -28.41784 -25.70283 -25.40569 -24.07386 -23.72684 -21.07928 -20.43169 -19.15480 -18.58709 -18.10808 -17.28157 -16.97652 -16.72230 -16.04658 -15.81758 -15.53654 -15.25769 -15.14716 -14.98463 -14.69350 -14.59185 -14.20961 -14.07314 -13.71926 -13.49519 -13.22146 -12.96569 -12.58785 -12.45522 -12.19601 -12.06714 -11.72610 -11.55641 -11.15761 -10.87309 -10.74374 -10.55407 -9.17559 -8.73026 -7.88490 -5.33518 -0.61800 -0.06427 1.49999 1.51872 1.52147 1.58739 1.72728 2.28411 2.52260 2.62696 2.71434 3.08740 3.25166 3.28284 3.62438 3.63636 3.76070 4.08804 4.21900 4.35572 4.43607 4.48660 4.54131 4.62148 4.74136 4.82697 4.94967 5.09246 5.24053 5.32276 5.58591 5.61126 5.70974 6.00096 6.35564 6.36288 6.69079 7.12027 7.80839 8.35029 9.18995 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.036340 B = 0.004163 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.307412 B = 6724.933618 C = 7010.671490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.294 3.706 3 C -0.091 4.091 4 C 0.191 3.809 5 N -0.511 5.511 6 C 0.313 3.687 7 N -0.477 5.477 8 C 0.071 3.929 9 C 0.140 3.860 10 N -0.614 5.614 11 C -0.266 4.266 12 H 0.071 0.929 13 C -0.048 4.048 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.295 1.295 17 H -0.276 1.276 18 H -0.278 1.278 19 C 0.187 3.813 20 C 0.045 3.955 21 C 0.011 3.989 22 F -0.126 7.126 23 C -0.017 4.017 24 H 0.205 0.795 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.018 0.982 29 H 0.252 0.748 30 H 0.005 0.995 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 1.056 3.031 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.021 4.021 3 C -0.098 4.098 4 C 0.028 3.972 5 N -0.224 5.224 6 C 0.079 3.921 7 N -0.192 5.192 8 C -0.057 4.057 9 C 0.014 3.986 10 N -0.338 5.338 11 C -0.396 4.396 12 H 0.089 0.911 13 C -0.244 4.244 14 N -0.581 5.581 15 Si 0.797 3.203 16 H -0.221 1.221 17 H -0.202 1.202 18 H -0.204 1.204 19 C 0.061 3.939 20 C -0.081 4.081 21 C -0.013 4.013 22 F -0.105 7.105 23 C -0.045 4.045 24 H 0.222 0.778 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.823 1.060 3.582 17.233 hybrid contribution 0.990 -0.295 -1.278 1.643 sum -15.834 0.765 2.304 16.019 Atomic orbital electron populations 1.81336 1.12765 1.09418 1.09015 1.25016 0.91613 0.92706 0.92805 1.16518 0.85092 1.05661 1.02550 1.23333 0.87782 0.92297 0.93757 1.67942 1.09119 1.20422 1.24966 1.20481 0.90604 0.90622 0.90354 1.58722 1.02551 1.49485 1.08420 1.22421 0.95908 0.93562 0.93795 1.21230 0.91048 0.98559 0.87754 1.44444 1.39453 1.46383 1.03536 1.19509 1.03676 1.01835 1.14598 0.91118 1.25795 0.98799 0.98477 1.01300 1.70156 1.37994 1.22753 1.27159 0.85324 0.78304 0.79169 0.77520 1.22097 1.20162 1.20379 1.20721 0.87789 0.93336 0.92098 1.23074 0.97997 0.99284 0.87763 1.17901 0.90043 0.98995 0.94407 1.91483 1.77182 1.74540 1.67279 1.21651 0.90385 0.95621 0.96893 0.77805 0.93487 0.88135 0.91035 0.96387 0.93935 0.97654 0.91379 0.93979 0.88335 0.79855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.58 18.54 19.01 0.35 -9.23 16 2 C 0.29 4.80 15.37 88.33 1.36 6.15 16 3 C -0.09 -1.32 5.75 -21.19 -0.12 -1.44 16 4 C 0.19 2.91 10.91 85.04 0.93 3.84 16 5 N -0.51 -11.68 8.62 -192.06 -1.66 -13.33 16 6 C 0.31 8.45 6.41 133.23 0.85 9.30 16 7 N -0.48 -15.97 4.59 -699.79 -3.21 -19.18 16 8 C 0.07 2.35 4.81 86.39 0.42 2.76 16 9 C 0.14 5.64 6.69 86.35 0.58 6.22 16 10 N -0.61 -30.24 3.03 -697.24 -2.11 -32.35 16 11 C -0.27 -14.27 9.63 84.03 0.81 -13.46 16 12 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 13 C -0.05 -2.62 4.94 84.86 0.42 -2.20 16 14 N -0.93 -54.05 11.15 21.65 0.24 -53.81 16 15 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.19 8.84 5.44 86.50 0.47 9.31 16 20 C 0.05 1.67 5.33 86.54 0.46 2.13 16 21 C 0.01 0.26 6.95 22.54 0.16 0.42 16 22 F -0.13 -3.36 14.74 44.97 0.66 -2.69 16 23 C -0.02 -0.27 9.88 22.74 0.22 -0.05 16 24 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 25 H 0.05 1.61 8.13 -2.38 -0.02 1.59 16 26 H 0.10 2.91 7.64 -2.39 -0.02 2.89 16 27 H 0.07 2.73 7.95 -2.39 -0.02 2.71 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 3.60 6.13 -2.39 -0.01 3.58 16 32 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.10 3.33 5.48 -2.39 -0.01 3.32 16 34 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -64.30 295.76 3.99 -60.30 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: 1.14 Total: 1.57 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 6.55 Total: 22.97 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -6.39 Total: -127.91 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.66 Total: -2.69 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.30 3.99 -60.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001306952648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.605 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds