Wall clock time and date at job start Mon Mar 30 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99983 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00142 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00053 * 180.02562 * 12 11 10 15 15 O 1.42899 * 110.73304 * 31.59213 * 14 12 11 16 16 C 1.54353 * 110.82160 * 267.97399 * 14 12 11 17 17 C 1.51374 * 105.16807 * 215.42694 * 16 14 12 18 18 C 1.38492 * 130.38778 * 197.18788 * 17 16 14 19 19 C 1.38101 * 120.21396 * 180.02562 * 18 17 16 20 20 C 1.38249 * 119.93780 * 359.97438 * 19 18 17 21 21 C 1.38105 * 119.93514 * 0.02562 * 20 19 18 22 22 C 1.38215 * 109.75939 * 17.18605 * 17 16 14 23 23 C 1.51370 * 109.76073 * 0.02562 * 22 17 16 24 24 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 0.96697 * 114.00193 * 300.70603 * 15 14 12 30 30 H 1.09002 * 110.30020 * 334.34853 * 16 14 12 31 31 H 1.08999 * 110.30243 * 96.50427 * 16 14 12 32 32 H 1.07997 * 119.89497 * 359.97438 * 18 17 16 33 33 H 1.08002 * 120.03213 * 180.02562 * 19 18 17 34 34 H 1.08003 * 120.03841 * 180.02562 * 20 19 18 35 35 H 1.07994 * 119.89841 * 179.97438 * 21 20 19 36 36 H 1.08992 * 110.30129 * 223.88405 * 23 22 17 37 37 H 1.09004 * 110.38467 * 101.77309 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4734 -2.6366 -0.0009 12 6 6.0828 -3.8326 -0.0003 13 8 5.4248 -4.8459 -0.0003 14 6 7.5877 -3.9115 0.0004 15 8 8.1522 -2.8010 0.7004 16 6 8.1336 -3.9917 -1.4412 17 6 9.3412 -4.9006 -1.3575 18 6 10.3904 -5.0826 -2.2429 19 6 11.3974 -5.9817 -1.9518 20 6 11.3592 -6.7025 -0.7727 21 6 10.3137 -6.5224 0.1116 22 6 9.3029 -5.6211 -0.1786 23 6 8.0667 -5.2462 0.6104 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6584 -3.1503 0.8892 28 1 3.6578 -3.1506 -0.8908 29 1 7.9145 -1.9402 0.3294 30 1 7.3835 -4.4195 -2.1064 31 1 8.4286 -3.0018 -1.7894 32 1 10.4208 -4.5203 -3.1644 33 1 12.2145 -6.1211 -2.6442 34 1 12.1461 -7.4058 -0.5432 35 1 10.2842 -7.0860 1.0323 36 1 8.3159 -5.1126 1.6630 37 1 7.2983 -6.0112 0.4984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318705584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:21 Heat of formation + Delta-G solvation = -116.526773 kcal Electronic energy + Delta-G solvation = -20619.945270 eV Core-core repulsion = 17326.866765 eV Total energy + Delta-G solvation = -3293.078505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12332 -39.68348 -37.34596 -36.40550 -34.11249 -33.35173 -31.70866 -30.85973 -28.99298 -27.72642 -25.68761 -23.77925 -21.83479 -21.33349 -20.77219 -20.29826 -18.50038 -17.19361 -16.59306 -16.46295 -16.27986 -15.86714 -15.42354 -14.82406 -14.31368 -14.03607 -13.85733 -13.64829 -13.39901 -13.26703 -13.01497 -12.82289 -12.53071 -12.01687 -11.84118 -11.63091 -11.49269 -11.34688 -11.05526 -10.97842 -10.77037 -10.50370 -10.01990 -9.83422 -9.79475 -9.40148 -9.04029 -8.76975 -8.66871 -6.17173 -4.18977 1.10403 1.15213 2.18629 2.77852 3.24327 3.32215 3.35739 3.51007 3.84474 4.01642 4.17263 4.34414 4.59251 4.76602 4.78943 4.85833 4.92623 5.16206 5.24942 5.28422 5.35576 5.44957 5.52418 5.63572 5.82694 5.84900 5.87133 5.88350 6.17881 6.26275 6.35986 6.37483 6.62751 6.74415 7.08046 7.14688 7.31165 7.56657 7.91037 8.34679 8.84095 9.41950 10.95354 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041766 B = 0.003313 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.241280 B = 8448.781823 C = 8688.517839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.358 6.358 12 C 0.443 3.557 13 O -0.502 6.502 14 C 0.147 3.853 15 O -0.533 6.533 16 C -0.101 4.101 17 C -0.090 4.090 18 C -0.103 4.103 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.066 4.066 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.392 0.608 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.371 -9.925 -2.677 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.009 3.991 11 O -0.274 6.274 12 C 0.284 3.716 13 O -0.390 6.390 14 C 0.104 3.896 15 O -0.341 6.341 16 C -0.138 4.138 17 C -0.090 4.090 18 C -0.121 4.121 19 C -0.140 4.140 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.085 4.085 23 C -0.103 4.103 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.243 0.757 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 23.196 -10.542 -2.305 25.583 hybrid contribution -0.123 1.259 -0.405 1.329 sum 23.073 -9.282 -2.710 25.018 Atomic orbital electron populations 1.69894 1.06302 1.27275 1.49911 1.24941 0.94776 0.99210 0.94065 0.86743 0.80442 0.83242 0.78729 1.20047 1.21127 1.18728 1.20827 0.88207 0.95075 1.52617 0.90650 1.19631 0.97090 0.89961 0.97929 1.23467 0.71780 1.01855 1.01957 1.86443 1.26794 1.31829 1.82334 1.24013 0.91768 0.82693 0.73119 1.90654 1.66708 1.36584 1.45061 1.21497 0.84730 0.89930 0.93397 1.86548 1.73909 1.16528 1.57085 1.21663 0.95769 1.00847 0.95502 1.20310 0.95607 0.97849 0.95259 1.20592 0.93501 0.98934 0.99090 1.21028 0.98675 0.96812 0.97436 1.21039 0.98281 0.99935 0.94456 1.20595 0.93523 0.98163 0.99922 1.20393 0.95682 0.96753 0.95699 1.21030 0.95575 0.93308 1.00397 0.92372 0.95276 0.95790 0.91487 0.91550 0.75740 0.88527 0.88590 0.86035 0.85799 0.85778 0.85949 0.88621 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.20 4.42 -27.88 -0.12 -0.33 16 10 C 0.08 1.70 5.40 37.16 0.20 1.90 16 11 O -0.36 -6.42 9.69 -44.31 -0.43 -6.85 16 12 C 0.44 7.24 6.85 36.00 0.25 7.49 16 13 O -0.50 -9.37 15.43 -18.75 -0.29 -9.66 16 14 C 0.15 1.90 1.34 -90.35 -0.12 1.78 16 15 O -0.53 -6.66 13.03 -48.59 -0.63 -7.29 16 16 C -0.10 -1.11 6.06 -26.84 -0.16 -1.27 16 17 C -0.09 -1.00 6.14 -104.21 -0.64 -1.64 16 18 C -0.10 -0.98 10.04 -39.54 -0.40 -1.38 16 19 C -0.12 -1.03 10.05 -39.63 -0.40 -1.43 16 20 C -0.12 -1.01 10.05 -39.63 -0.40 -1.41 16 21 C -0.10 -1.01 10.04 -39.53 -0.40 -1.41 16 22 C -0.09 -0.97 6.14 -104.20 -0.64 -1.61 16 23 C -0.07 -0.80 6.00 -26.84 -0.16 -0.96 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 27 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 28 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 29 H 0.39 3.82 8.72 45.56 0.40 4.22 16 30 H 0.10 1.08 7.89 -51.93 -0.41 0.67 16 31 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.10 1.10 8.11 -51.93 -0.42 0.67 16 37 H 0.11 1.44 6.91 -51.93 -0.36 1.08 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -32.22 317.29 -7.99 -40.20 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.10 Total: 2.19 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.42 Total: -13.46 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.31 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.35 Total: -23.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.22 -7.99 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318705584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.323 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds