Wall clock time and date at job start Mon Mar 30 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99983 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00142 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00053 * 180.02562 * 12 11 10 15 15 O 1.42899 * 110.73304 * 31.59213 * 14 12 11 16 16 C 1.54353 * 110.82160 * 267.97399 * 14 12 11 17 17 C 1.51374 * 105.16807 * 215.42694 * 16 14 12 18 18 C 1.38492 * 130.38778 * 197.18788 * 17 16 14 19 19 C 1.38101 * 120.21396 * 180.02562 * 18 17 16 20 20 C 1.38249 * 119.93780 * 359.97438 * 19 18 17 21 21 C 1.38105 * 119.93514 * 0.02562 * 20 19 18 22 22 C 1.38215 * 109.75939 * 17.18605 * 17 16 14 23 23 C 1.51370 * 109.76073 * 0.02562 * 22 17 16 24 24 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 0.96697 * 114.00193 * 300.70603 * 15 14 12 30 30 H 1.09002 * 110.30020 * 334.34853 * 16 14 12 31 31 H 1.08999 * 110.30243 * 96.50427 * 16 14 12 32 32 H 1.07997 * 119.89497 * 359.97438 * 18 17 16 33 33 H 1.08002 * 120.03213 * 180.02562 * 19 18 17 34 34 H 1.08003 * 120.03841 * 180.02562 * 20 19 18 35 35 H 1.07994 * 119.89841 * 179.97438 * 21 20 19 36 36 H 1.08992 * 110.30129 * 223.88405 * 23 22 17 37 37 H 1.09004 * 110.38467 * 101.77309 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4734 -2.6366 -0.0009 12 6 6.0828 -3.8326 -0.0003 13 8 5.4248 -4.8459 -0.0003 14 6 7.5877 -3.9115 0.0004 15 8 8.1522 -2.8010 0.7004 16 6 8.1336 -3.9917 -1.4412 17 6 9.3412 -4.9006 -1.3575 18 6 10.3904 -5.0826 -2.2429 19 6 11.3974 -5.9817 -1.9518 20 6 11.3592 -6.7025 -0.7727 21 6 10.3137 -6.5224 0.1116 22 6 9.3029 -5.6211 -0.1786 23 6 8.0667 -5.2462 0.6104 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6584 -3.1503 0.8892 28 1 3.6578 -3.1506 -0.8908 29 1 7.9145 -1.9402 0.3294 30 1 7.3835 -4.4195 -2.1064 31 1 8.4286 -3.0018 -1.7894 32 1 10.4208 -4.5203 -3.1644 33 1 12.2145 -6.1211 -2.6442 34 1 12.1461 -7.4058 -0.5432 35 1 10.2842 -7.0860 1.0323 36 1 8.3159 -5.1126 1.6630 37 1 7.2983 -6.0112 0.4984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318705584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:21 Heat of formation + Delta-G solvation = -136.474892 kcal Electronic energy + Delta-G solvation = -20620.810285 eV Core-core repulsion = 17326.866765 eV Total energy + Delta-G solvation = -3293.943521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24213 -40.74881 -38.33546 -37.83485 -35.43090 -34.95002 -32.82996 -32.43051 -29.92013 -28.54445 -27.44451 -25.03028 -22.82963 -22.51964 -22.06982 -21.42543 -19.78263 -18.99893 -18.03763 -17.73577 -17.23875 -16.90300 -16.36317 -16.29357 -15.64030 -15.30259 -15.20045 -14.66648 -14.64462 -14.40787 -14.10069 -13.86255 -13.70796 -13.37128 -13.24400 -12.89172 -12.73918 -12.52266 -12.50240 -12.21235 -11.92064 -11.82812 -11.73827 -11.57852 -11.50169 -11.13706 -10.82317 -9.73765 -9.51202 -8.35477 -6.44260 0.38377 0.45524 0.87461 1.38200 1.40156 1.43196 1.52919 2.33867 2.79653 2.90861 2.99613 3.06171 3.23049 3.58762 3.83287 3.98770 4.12081 4.13312 4.14217 4.25304 4.45693 4.51533 4.55757 4.58259 4.67901 4.73233 4.77053 4.97896 5.06768 5.16683 5.26482 5.39216 5.49690 5.51540 5.60318 5.63635 6.08042 6.13688 6.38052 6.58484 6.62215 7.21016 8.80677 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041766 B = 0.003313 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.241280 B = 8448.781823 C = 8688.517839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.545 4.545 8 H 0.034 0.966 9 C -0.002 4.002 10 C 0.092 3.908 11 O -0.352 6.352 12 C 0.443 3.557 13 O -0.528 6.528 14 C 0.155 3.845 15 O -0.537 6.537 16 C -0.096 4.096 17 C -0.107 4.107 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.107 4.107 23 C -0.066 4.066 24 H 0.271 0.729 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.404 0.596 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.097 0.903 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.766 -9.143 -3.309 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.165 1.165 7 C -0.582 4.582 8 H 0.052 0.948 9 C -0.040 4.040 10 C 0.019 3.981 11 O -0.268 6.268 12 C 0.285 3.715 13 O -0.418 6.418 14 C 0.112 3.888 15 O -0.346 6.346 16 C -0.133 4.133 17 C -0.107 4.107 18 C -0.129 4.129 19 C -0.139 4.139 20 C -0.138 4.138 21 C -0.132 4.132 22 C -0.107 4.107 23 C -0.103 4.103 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.256 0.744 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.115 0.885 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 26.614 -9.771 -2.940 28.503 hybrid contribution -1.163 0.881 -0.206 1.473 sum 25.451 -8.890 -3.147 27.142 Atomic orbital electron populations 1.70046 1.08425 1.28675 1.51312 1.25981 0.95674 1.03691 0.93361 0.85583 0.79581 0.77475 0.79605 1.18625 1.20814 1.16485 1.21118 0.90798 0.93763 1.52558 0.94796 1.19462 0.94068 0.91714 0.98710 1.23031 0.73730 1.00142 1.01234 1.86428 1.24805 1.32896 1.82681 1.24883 0.93168 0.81647 0.71754 1.90645 1.67608 1.37285 1.46227 1.21509 0.81739 0.90515 0.95075 1.86543 1.73506 1.17134 1.57433 1.21633 0.95777 1.02136 0.93769 1.20412 0.96184 0.98294 0.95831 1.20888 0.93163 0.99340 0.99475 1.21428 0.98912 0.95826 0.97767 1.21416 0.98319 0.99997 0.94061 1.20875 0.93483 0.97949 1.00917 1.20435 0.95985 0.98166 0.96091 1.20992 0.95974 0.92589 1.00763 0.92038 0.94519 0.94320 0.92580 0.92139 0.74357 0.89072 0.86630 0.84248 0.83087 0.83152 0.84642 0.88468 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.01 0.63 5.47 84.66 0.46 1.09 16 3 Si 0.96 42.59 27.47 68.60 1.88 44.48 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 7 C -0.54 -31.16 9.66 25.60 0.25 -30.91 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 9 C 0.00 -0.10 4.42 29.85 0.13 0.03 16 10 C 0.09 3.84 5.40 71.98 0.39 4.23 16 11 O -0.35 -12.34 9.69 -46.60 -0.45 -12.79 16 12 C 0.44 14.38 6.85 71.24 0.49 14.87 16 13 O -0.53 -20.09 15.43 21.98 0.34 -19.75 16 14 C 0.15 3.86 1.34 -10.62 -0.01 3.85 16 15 O -0.54 -12.53 13.03 -136.20 -1.77 -14.31 16 16 C -0.10 -1.99 6.06 30.52 0.18 -1.80 16 17 C -0.11 -2.21 6.14 -19.59 -0.12 -2.33 16 18 C -0.11 -1.83 10.04 22.30 0.22 -1.60 16 19 C -0.12 -1.68 10.05 22.24 0.22 -1.45 16 20 C -0.12 -1.70 10.05 22.24 0.22 -1.48 16 21 C -0.11 -2.02 10.04 22.30 0.22 -1.80 16 22 C -0.11 -2.31 6.14 -19.59 -0.12 -2.43 16 23 C -0.07 -1.59 6.00 30.52 0.18 -1.41 16 24 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 25 H 0.04 1.64 7.20 -2.39 -0.02 1.63 16 26 H 0.04 1.68 7.57 -2.39 -0.02 1.66 16 27 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 28 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 29 H 0.40 7.01 8.72 -74.06 -0.65 6.36 16 30 H 0.09 1.96 7.89 -2.39 -0.02 1.95 16 31 H 0.12 1.88 8.11 -2.39 -0.02 1.86 16 32 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.10 2.21 8.11 -2.39 -0.02 2.19 16 37 H 0.10 2.64 6.91 -2.39 -0.02 2.63 16 Total: -1.00 -70.27 317.29 3.41 -66.87 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.38 Total: 14.81 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 2.73 Total: -21.16 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.30 Total: -58.15 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -1.89 Total: -46.85 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.48 kcal Total: -70.27 3.41 -66.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318705584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.608 kcal (2) G-P(sol) polarization free energy of solvation -70.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds