Wall clock time and date at job start Mon Mar 30 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48500 * 109.46836 * 239.99582 * 3 2 1 5 5 H 1.48503 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46926 * 119.99602 * 3 2 1 7 7 C 1.37871 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00455 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47056 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47165 * 180.02562 * 11 10 9 13 13 N 1.28728 * 125.33927 * 270.00698 * 12 11 10 14 14 N 1.28987 * 108.94390 * 179.72613 * 13 12 11 15 15 C 1.34053 * 107.26518 * 0.42725 * 14 13 12 16 16 C 1.48456 * 126.67701 * 179.83490 * 15 14 13 17 17 C 1.39309 * 120.09312 * 179.41193 * 16 15 14 18 18 C 1.37983 * 119.90387 * 179.77009 * 17 16 15 19 19 C 1.38545 * 120.09450 * 0.51185 * 18 17 16 20 20 F 1.35104 * 119.91050 * 179.72642 * 19 18 17 21 21 C 1.38541 * 120.18087 * 359.73841 * 19 18 17 22 22 C 1.37981 * 120.09610 * 0.02562 * 21 19 18 23 23 N 1.28867 * 125.33921 * 90.00234 * 12 11 10 24 24 H 0.96997 * 119.99989 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47155 * 59.99548 * 9 7 2 26 26 H 1.08997 * 109.46619 * 299.99468 * 9 7 2 27 27 H 1.09006 * 109.47063 * 60.00275 * 10 9 7 28 28 H 1.08992 * 109.47428 * 300.00343 * 10 9 7 29 29 H 1.09006 * 109.46604 * 60.00430 * 11 10 9 30 30 H 1.08996 * 109.46931 * 300.00524 * 11 10 9 31 31 H 1.07998 * 120.04782 * 0.02841 * 17 16 15 32 32 H 1.08006 * 119.95132 * 180.23306 * 18 17 16 33 33 H 1.08007 * 119.95480 * 179.97438 * 21 19 18 34 34 H 1.08000 * 120.04565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 7 2.9163 -6.6670 -1.0480 14 7 3.7248 -7.6036 -0.6834 15 6 3.7335 -7.6223 0.6570 16 6 4.5157 -8.5370 1.5260 17 6 4.4299 -8.4272 2.9121 18 6 5.1550 -9.2825 3.7162 19 6 5.9757 -10.2426 3.1469 20 9 6.6883 -11.0746 3.9377 21 6 6.0679 -10.3518 1.7688 22 6 5.3424 -9.5036 0.9575 23 7 2.9166 -6.6667 1.0533 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8893 29 1 0.8534 -5.0451 -0.8887 30 1 0.8539 -5.0446 0.8913 31 1 3.7935 -7.6764 3.3567 32 1 5.0862 -9.2005 4.7909 33 1 6.7091 -11.1013 1.3289 34 1 5.4146 -9.5897 -0.1166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319347902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:26 Heat of formation + Delta-G solvation = 90.074894 kcal Electronic energy + Delta-G solvation = -19405.670347 eV Core-core repulsion = 16062.675959 eV Total energy + Delta-G solvation = -3342.994388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.20983 -44.17250 -39.24134 -35.99583 -33.71413 -33.40198 -31.94734 -31.48253 -30.21358 -27.64698 -24.66012 -24.43069 -23.38660 -22.02199 -21.74855 -20.68247 -18.14872 -17.61344 -16.99444 -16.68993 -16.38831 -15.91792 -15.87686 -14.70705 -14.60384 -14.48645 -13.90904 -13.82164 -13.40147 -13.17661 -12.91207 -12.63909 -12.34372 -12.08426 -11.68028 -11.39133 -11.27200 -10.96458 -10.91449 -10.85251 -10.74838 -10.47547 -10.06403 -9.67185 -9.46805 -9.32694 -8.69246 -8.49548 -6.14806 -4.18366 0.44497 0.91261 1.40771 2.09405 2.29117 3.26225 3.30944 3.33538 3.40793 3.64871 3.91392 4.17544 4.34949 4.53037 4.54182 4.91253 4.93905 5.18755 5.20508 5.22096 5.30722 5.45854 5.60834 5.63742 5.77195 5.78748 5.92294 6.09304 6.13457 6.22270 6.48137 6.50430 6.68759 7.41529 7.50828 7.81650 8.21237 8.43735 8.86612 9.46953 10.96361 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.030429 B = 0.002837 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.944258 B = 9865.878828 C =10325.500734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.124 4.124 11 C 0.120 3.880 12 N -0.116 5.116 13 N -0.058 5.058 14 N -0.285 5.285 15 C 0.190 3.810 16 C -0.012 4.012 17 C -0.054 4.054 18 C -0.155 4.155 19 C 0.109 3.891 20 F -0.138 7.138 21 C -0.155 4.155 22 C -0.052 4.052 23 N -0.295 5.295 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -19.400 4.992 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.163 4.163 11 C 0.002 3.998 12 N -0.029 5.029 13 N -0.050 5.050 14 N -0.156 5.156 15 C -0.089 4.089 16 C -0.016 4.016 17 C -0.074 4.074 18 C -0.174 4.174 19 C 0.089 3.911 20 F -0.117 7.117 21 C -0.174 4.174 22 C -0.072 4.072 23 N -0.146 5.146 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.386 -18.976 4.409 20.834 hybrid contribution 0.657 0.726 0.561 1.129 sum 8.044 -18.250 4.970 20.554 Atomic orbital electron populations 1.69931 1.06058 1.27087 1.50138 1.24994 0.94891 0.99375 0.94940 0.86603 0.79582 0.82788 0.78760 1.20128 1.21145 1.20137 1.21078 0.93062 0.90620 1.51654 0.92587 1.19048 0.93549 0.90425 0.97990 1.22153 1.00276 0.91455 1.02421 1.22961 0.88908 0.81449 1.06525 1.50558 1.28749 1.23609 1.00023 1.78923 1.07253 1.04214 1.14645 1.75962 1.15188 1.14148 1.10284 1.23431 0.98878 0.96671 0.89924 1.17300 0.97812 0.95267 0.91191 1.21104 0.97103 0.97615 0.91600 1.21081 0.98584 0.96323 1.01375 1.17875 0.93707 0.90876 0.88618 1.91514 1.76230 1.69914 1.74010 1.21070 1.02756 1.02138 0.91459 1.21066 0.92929 0.92157 1.01071 1.74859 1.13793 1.10139 1.15812 0.92694 0.95805 0.95841 0.91822 0.91761 0.86479 0.86717 0.83731 0.83998 0.84009 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.09 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.30 5.48 -26.73 -0.15 -2.44 16 11 C 0.12 1.78 6.60 -4.04 -0.03 1.75 16 12 N -0.12 -1.86 3.99 -10.63 -0.04 -1.90 16 13 N -0.06 -0.98 13.23 60.35 0.80 -0.18 16 14 N -0.29 -4.59 12.23 32.16 0.39 -4.20 16 15 C 0.19 2.82 7.94 -156.30 -1.24 1.58 16 16 C -0.01 -0.15 5.88 -104.89 -0.62 -0.76 16 17 C -0.05 -0.55 9.70 -39.28 -0.38 -0.93 16 18 C -0.15 -1.36 10.01 -39.56 -0.40 -1.76 16 19 C 0.11 1.01 7.30 -39.36 -0.29 0.72 16 20 F -0.14 -1.34 17.26 2.25 0.04 -1.30 16 21 C -0.16 -1.33 10.01 -39.56 -0.40 -1.72 16 22 C -0.05 -0.52 9.70 -39.27 -0.38 -0.90 16 23 N -0.29 -4.63 11.85 32.17 0.38 -4.25 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.14 1.40 7.88 -52.49 -0.41 0.99 16 32 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.15 1.33 7.89 -52.49 -0.41 0.92 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -29.88 311.65 -6.19 -36.07 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -3.75 Total: -3.26 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -4.42 Total: -16.81 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 2.27 Total: -35.32 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.88 -6.19 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319347902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.145 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds