Wall clock time and date at job start Mon Mar 30 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48500 * 109.46836 * 239.99582 * 3 2 1 5 5 H 1.48503 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46926 * 119.99602 * 3 2 1 7 7 C 1.37871 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00455 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47056 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47165 * 180.02562 * 11 10 9 13 13 N 1.28728 * 125.33927 * 270.00698 * 12 11 10 14 14 N 1.28987 * 108.94390 * 179.72613 * 13 12 11 15 15 C 1.34053 * 107.26518 * 0.42725 * 14 13 12 16 16 C 1.48456 * 126.67701 * 179.83490 * 15 14 13 17 17 C 1.39309 * 120.09312 * 179.41193 * 16 15 14 18 18 C 1.37983 * 119.90387 * 179.77009 * 17 16 15 19 19 C 1.38545 * 120.09450 * 0.51185 * 18 17 16 20 20 F 1.35104 * 119.91050 * 179.72642 * 19 18 17 21 21 C 1.38541 * 120.18087 * 359.73841 * 19 18 17 22 22 C 1.37981 * 120.09610 * 0.02562 * 21 19 18 23 23 N 1.28867 * 125.33921 * 90.00234 * 12 11 10 24 24 H 0.96997 * 119.99989 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47155 * 59.99548 * 9 7 2 26 26 H 1.08997 * 109.46619 * 299.99468 * 9 7 2 27 27 H 1.09006 * 109.47063 * 60.00275 * 10 9 7 28 28 H 1.08992 * 109.47428 * 300.00343 * 10 9 7 29 29 H 1.09006 * 109.46604 * 60.00430 * 11 10 9 30 30 H 1.08996 * 109.46931 * 300.00524 * 11 10 9 31 31 H 1.07998 * 120.04782 * 0.02841 * 17 16 15 32 32 H 1.08006 * 119.95132 * 180.23306 * 18 17 16 33 33 H 1.08007 * 119.95480 * 179.97438 * 21 19 18 34 34 H 1.08000 * 120.04565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 7 2.9163 -6.6670 -1.0480 14 7 3.7248 -7.6036 -0.6834 15 6 3.7335 -7.6223 0.6570 16 6 4.5157 -8.5370 1.5260 17 6 4.4299 -8.4272 2.9121 18 6 5.1550 -9.2825 3.7162 19 6 5.9757 -10.2426 3.1469 20 9 6.6883 -11.0746 3.9377 21 6 6.0679 -10.3518 1.7688 22 6 5.3424 -9.5036 0.9575 23 7 2.9166 -6.6667 1.0533 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8893 29 1 0.8534 -5.0451 -0.8887 30 1 0.8539 -5.0446 0.8913 31 1 3.7935 -7.6764 3.3567 32 1 5.0862 -9.2005 4.7909 33 1 6.7091 -11.1013 1.3289 34 1 5.4146 -9.5897 -0.1166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319347902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:26 Heat of formation + Delta-G solvation = 73.816067 kcal Electronic energy + Delta-G solvation = -19406.375383 eV Core-core repulsion = 16062.675959 eV Total energy + Delta-G solvation = -3343.699423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.95041 -45.37493 -40.01306 -37.37964 -35.42485 -34.55277 -33.55623 -32.23295 -31.28533 -29.21238 -26.27747 -25.44534 -24.41538 -23.24944 -22.69576 -22.26172 -19.13954 -18.69305 -18.36372 -18.05111 -17.38349 -17.06655 -16.62337 -16.50534 -16.05419 -15.40827 -14.95158 -14.57427 -14.57226 -14.30038 -14.17125 -13.90698 -13.66105 -13.38243 -13.05237 -12.95839 -12.71009 -12.57301 -12.26866 -12.12242 -11.93372 -11.79318 -11.73935 -11.49678 -11.20402 -10.56811 -10.17805 -9.56808 -8.23228 -6.33114 -0.42070 0.17731 0.20256 0.89824 1.24801 1.40966 1.41890 1.50086 2.39602 2.59965 2.62264 3.11218 3.12247 3.18218 3.72122 3.82968 3.86391 3.88803 4.19391 4.21651 4.26705 4.35868 4.52667 4.60082 4.75050 4.86310 4.92644 4.99894 5.05272 5.10454 5.21119 5.35694 5.44914 5.62767 5.76421 5.78635 6.19035 6.81244 7.22471 7.36025 8.87843 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.030429 B = 0.002837 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.944258 B = 9865.878828 C =10325.500734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.119 5.119 13 N -0.073 5.073 14 N -0.296 5.296 15 C 0.196 3.804 16 C -0.038 4.038 17 C -0.055 4.055 18 C -0.150 4.150 19 C 0.108 3.892 20 F -0.139 7.139 21 C -0.148 4.148 22 C -0.051 4.051 23 N -0.307 5.307 24 H 0.265 0.735 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 -20.282 5.664 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.146 4.146 11 C 0.009 3.991 12 N -0.033 5.033 13 N -0.066 5.066 14 N -0.167 5.167 15 C -0.083 4.083 16 C -0.041 4.041 17 C -0.076 4.076 18 C -0.168 4.168 19 C 0.088 3.912 20 F -0.118 7.118 21 C -0.166 4.166 22 C -0.071 4.071 23 N -0.158 5.158 24 H 0.074 0.926 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.532 -19.868 5.081 22.212 hybrid contribution 0.366 0.901 0.402 1.052 sum 8.898 -18.967 5.483 21.656 Atomic orbital electron populations 1.70035 1.07426 1.27977 1.51169 1.25824 0.95736 1.02899 0.94662 0.85609 0.78415 0.78687 0.79019 1.19526 1.20684 1.19420 1.21555 0.93384 0.92400 1.51221 0.92742 1.18895 0.93897 0.91166 0.96673 1.21786 0.99113 0.91974 1.01685 1.22843 0.88255 0.79536 1.08454 1.50523 1.28954 1.23774 1.00012 1.78887 1.07768 1.04760 1.15148 1.75935 1.15393 1.14293 1.11062 1.23974 0.98181 0.96349 0.89796 1.17474 0.99028 0.96051 0.91585 1.21148 0.97360 0.97975 0.91083 1.21272 0.97686 0.95497 1.02386 1.18036 0.93516 0.90754 0.88944 1.91519 1.76230 1.69929 1.74077 1.21288 1.02246 1.01947 0.91141 1.21147 0.92615 0.91837 1.01540 1.74859 1.14427 1.10732 1.15765 0.92586 0.97061 0.97016 0.92473 0.92537 0.84704 0.84885 0.83606 0.81858 0.81542 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.34 13.29 21.45 0.28 -53.06 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.96 42.82 29.54 68.60 2.03 44.84 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -29.53 9.11 25.60 0.23 -29.29 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.11 -3.93 5.48 30.60 0.17 -3.76 16 11 C 0.13 3.68 6.60 86.38 0.57 4.25 16 12 N -0.12 -3.75 3.99 -187.54 -0.75 -4.50 16 13 N -0.07 -2.43 13.23 37.02 0.49 -1.94 16 14 N -0.30 -9.41 12.23 -52.18 -0.64 -10.04 16 15 C 0.20 5.70 7.94 137.38 1.09 6.79 16 16 C -0.04 -0.86 5.88 -20.04 -0.12 -0.97 16 17 C -0.06 -1.05 9.70 22.47 0.22 -0.84 16 18 C -0.15 -2.32 10.01 22.28 0.22 -2.09 16 19 C 0.11 1.73 7.30 22.42 0.16 1.89 16 20 F -0.14 -2.34 17.26 44.97 0.78 -1.57 16 21 C -0.15 -2.17 10.01 22.28 0.22 -1.95 16 22 C -0.05 -0.93 9.70 22.47 0.22 -0.72 16 23 N -0.31 -9.45 11.85 -52.13 -0.62 -10.07 16 24 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.14 3.44 8.14 -2.38 -0.02 3.42 16 30 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.15 2.68 7.88 -2.91 -0.02 2.66 16 32 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.15 2.55 7.89 -2.91 -0.02 2.53 16 Total: -1.00 -63.22 311.65 6.29 -56.93 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.12 Total: 3.58 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 3.60 Total: -24.18 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.23 Total: -79.60 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.57 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.22 6.29 -56.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319347902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.745 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds