Wall clock time and date at job start Mon Mar 30 2020 01:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40059 * 125.87164 * 2 1 4 4 C 1.30253 * 109.69638 * 180.02562 * 3 2 1 5 5 C 1.41166 * 108.47042 * 0.02562 * 4 3 2 6 6 C 1.36316 * 125.87644 * 180.02562 * 2 1 3 7 7 N 1.33197 * 134.60831 * 0.02562 * 6 2 1 8 8 C 1.31507 * 120.67914 * 179.97438 * 7 6 2 9 9 N 1.32133 * 122.64450 * 359.75402 * 8 7 6 10 10 C 1.32850 * 121.19304 * 0.52111 * 9 8 7 11 11 N 1.38115 * 120.81434 * 179.75216 * 10 9 8 12 12 C 1.46499 * 119.99772 * 359.72061 * 11 10 9 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 10 14 14 O 1.21294 * 119.99892 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99847 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99655 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00229 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99679 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00284 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47289 * 89.99771 * 20 18 16 22 22 H 1.48498 * 109.47187 * 210.00060 * 20 18 16 23 23 H 1.48503 * 109.47220 * 329.99769 * 20 18 16 24 24 H 1.08998 * 109.47639 * 269.97580 * 1 2 3 25 25 H 1.08995 * 109.47078 * 29.98217 * 1 2 3 26 26 H 1.09008 * 109.47090 * 149.97765 * 1 2 3 27 27 H 1.07996 * 125.76889 * 179.97438 * 4 3 2 28 28 H 1.08001 * 118.67967 * 179.97438 * 8 7 6 29 29 H 0.96999 * 120.00243 * 179.72293 * 11 10 9 30 30 H 1.09004 * 109.47024 * 300.00390 * 12 11 10 31 31 H 1.09005 * 109.47136 * 60.00006 * 12 11 10 32 32 H 0.97000 * 120.00550 * 359.97438 * 15 13 12 33 33 H 0.96998 * 119.99979 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2857 1.1349 0.0000 4 6 3.5366 0.7721 -0.0005 5 6 3.5932 -0.6384 -0.0015 6 6 2.2638 -1.1045 -0.0005 7 7 2.0436 -2.4182 -0.0015 8 6 3.0482 -3.2669 -0.0022 9 7 4.3107 -2.8770 -0.0068 10 6 4.6328 -1.5882 -0.0006 11 7 5.9551 -1.1895 -0.0003 12 6 7.0227 -2.1927 -0.0007 13 6 8.3617 -1.5014 0.0003 14 8 8.4187 -0.2898 0.0008 15 7 9.4959 -2.2294 -0.0004 16 6 10.7142 -1.6004 0.0011 17 1 10.7649 -0.5217 0.0024 18 6 11.8835 -2.3510 0.0010 19 7 11.8218 -3.6636 -0.0001 20 14 13.5434 -1.4940 0.0023 21 1 13.9827 -1.2680 1.4027 22 1 14.5397 -2.3437 -0.6980 23 1 13.4273 -0.1890 -0.6968 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 4.3870 1.4378 -0.0011 28 1 2.8326 -4.3252 -0.0026 29 1 6.1770 -0.2452 0.0002 30 1 6.9355 -2.8164 0.8889 31 1 6.9356 -2.8156 -0.8911 32 1 9.4504 -3.1983 -0.0011 33 1 12.6381 -4.1875 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321814855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:35 Heat of formation + Delta-G solvation = 84.584869 kcal Electronic energy + Delta-G solvation = -20051.250377 eV Core-core repulsion = 16727.937886 eV Total energy + Delta-G solvation = -3323.312491 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.92840 -39.07737 -38.40014 -36.02731 -34.14171 -33.39938 -32.04588 -31.44869 -30.28427 -27.68395 -26.72260 -24.60740 -24.16079 -22.72453 -20.75515 -19.71352 -18.59716 -18.09806 -17.51474 -16.93894 -16.11022 -15.76272 -15.29647 -14.96058 -14.49641 -14.27809 -14.23789 -14.15883 -13.98498 -13.53358 -12.78121 -12.71450 -12.45623 -12.32279 -11.66635 -11.47941 -11.32088 -11.11086 -10.62877 -10.49142 -10.35548 -9.70130 -9.64869 -9.14192 -8.95838 -8.70586 -8.15898 -7.92410 -6.56177 -3.98296 0.82325 1.49133 2.05585 2.41967 3.08386 3.09117 3.20186 3.25942 3.67502 3.95899 4.04336 4.07931 4.17060 4.60018 4.64687 4.81317 4.87669 5.02565 5.12473 5.23024 5.26767 5.31774 5.76749 5.88267 5.93492 6.04713 6.27558 6.58531 6.90168 7.14953 7.35885 7.41901 7.68801 7.88126 8.38483 8.40092 8.99742 9.33409 9.80860 10.60532 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.003292 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.168061 B = 8502.771347 C = 9125.492357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.387 5.387 3 N -0.265 5.265 4 C 0.113 3.887 5 C -0.338 4.338 6 C 0.370 3.630 7 N -0.590 5.590 8 C 0.390 3.610 9 N -0.610 5.610 10 C 0.521 3.479 11 N -0.667 5.667 12 C 0.114 3.886 13 C 0.425 3.575 14 O -0.598 6.598 15 N -0.546 5.546 16 C -0.306 4.306 17 H 0.106 0.894 18 C 0.027 3.973 19 N -0.893 5.893 20 Si 0.933 3.067 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.268 1.268 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.196 0.804 28 H 0.201 0.799 29 H 0.423 0.577 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 1.304 -0.085 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.177 5.177 3 N -0.079 5.079 4 C -0.083 4.083 5 C -0.356 4.356 6 C 0.124 3.876 7 N -0.319 5.319 8 C 0.097 3.903 9 N -0.341 5.341 10 C 0.267 3.733 11 N -0.297 5.297 12 C -0.014 4.014 13 C 0.210 3.790 14 O -0.485 6.485 15 N -0.181 5.181 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.176 4.176 19 N -0.533 5.533 20 Si 0.760 3.240 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.213 0.787 28 H 0.217 0.783 29 H 0.264 0.736 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.232 1.972 -0.098 18.338 hybrid contribution 1.596 0.185 0.035 1.607 sum -16.636 2.156 -0.063 16.775 Atomic orbital electron populations 1.21784 0.73396 1.04342 1.03195 1.48200 1.06237 1.00469 1.62765 1.76973 1.01858 1.06819 1.22240 1.23699 0.95248 0.93031 0.96355 1.19528 0.94895 0.95282 1.25903 1.18879 0.87760 0.88455 0.92538 1.67544 1.37318 0.99151 1.27907 1.24560 0.81458 0.99181 0.85099 1.68116 1.22408 1.14557 1.28989 1.18041 0.84434 0.87912 0.82874 1.44443 1.00894 1.11067 1.73334 1.21062 0.85887 0.90616 1.03789 1.19734 0.85264 0.88059 0.85927 1.90506 1.86683 1.13785 1.57555 1.41783 1.04638 1.09318 1.62333 1.19734 0.81546 0.93895 1.48364 0.87642 1.25328 1.00187 0.95444 0.96663 1.69607 1.30077 1.04560 1.49095 0.85812 0.80609 0.79094 0.78533 1.20230 1.20761 1.19281 0.91121 0.89454 0.89198 0.78732 0.78255 0.73574 0.89322 0.89303 0.76971 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 11.47 59.84 0.69 1.67 16 2 N -0.39 -5.08 4.05 -67.25 -0.27 -5.35 16 3 N -0.26 -3.61 12.45 30.80 0.38 -3.23 16 4 C 0.11 1.48 11.87 -17.11 -0.20 1.27 16 5 C -0.34 -4.98 6.14 -106.82 -0.66 -5.64 16 6 C 0.37 5.40 8.04 -156.23 -1.26 4.15 16 7 N -0.59 -8.17 10.47 -13.96 -0.15 -8.32 16 8 C 0.39 4.94 12.24 -92.11 -1.13 3.81 16 9 N -0.61 -8.96 9.69 -13.62 -0.13 -9.10 16 10 C 0.52 7.97 7.55 -154.85 -1.17 6.80 16 11 N -0.67 -10.53 5.65 -61.26 -0.35 -10.88 16 12 C 0.11 1.93 6.21 -5.20 -0.03 1.90 16 13 C 0.42 9.28 7.85 -10.99 -0.09 9.19 16 14 O -0.60 -14.77 15.24 5.55 0.08 -14.69 16 15 N -0.55 -13.03 5.29 -10.96 -0.06 -13.09 16 16 C -0.31 -8.11 9.68 -14.93 -0.14 -8.25 16 17 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 18 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.28 13.05 55.50 0.72 -22.55 16 20 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.20 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.42 6.69 7.30 -40.82 -0.30 6.39 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.40 9.04 7.90 -40.82 -0.32 8.71 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -31.67 300.82 -7.43 -39.10 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -3.09 Total: 12.96 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: -4.09 Total: 15.49 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: 0.15 Total: -72.51 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.67 -7.43 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321814855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.684 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds