Wall clock time and date at job start Mon Mar 30 2020 01:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40059 * 125.87164 * 2 1 4 4 C 1.30253 * 109.69638 * 180.02562 * 3 2 1 5 5 C 1.41166 * 108.47042 * 0.02562 * 4 3 2 6 6 C 1.36316 * 125.87644 * 180.02562 * 2 1 3 7 7 N 1.33197 * 134.60831 * 0.02562 * 6 2 1 8 8 C 1.31507 * 120.67914 * 179.97438 * 7 6 2 9 9 N 1.32133 * 122.64450 * 359.75402 * 8 7 6 10 10 C 1.32850 * 121.19304 * 0.52111 * 9 8 7 11 11 N 1.38115 * 120.81434 * 179.75216 * 10 9 8 12 12 C 1.46499 * 119.99772 * 359.72061 * 11 10 9 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 10 14 14 O 1.21294 * 119.99892 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99847 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99655 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00229 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99679 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00284 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47289 * 89.99771 * 20 18 16 22 22 H 1.48498 * 109.47187 * 210.00060 * 20 18 16 23 23 H 1.48503 * 109.47220 * 329.99769 * 20 18 16 24 24 H 1.08998 * 109.47639 * 269.97580 * 1 2 3 25 25 H 1.08995 * 109.47078 * 29.98217 * 1 2 3 26 26 H 1.09008 * 109.47090 * 149.97765 * 1 2 3 27 27 H 1.07996 * 125.76889 * 179.97438 * 4 3 2 28 28 H 1.08001 * 118.67967 * 179.97438 * 8 7 6 29 29 H 0.96999 * 120.00243 * 179.72293 * 11 10 9 30 30 H 1.09004 * 109.47024 * 300.00390 * 12 11 10 31 31 H 1.09005 * 109.47136 * 60.00006 * 12 11 10 32 32 H 0.97000 * 120.00550 * 359.97438 * 15 13 12 33 33 H 0.96998 * 119.99979 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2857 1.1349 0.0000 4 6 3.5366 0.7721 -0.0005 5 6 3.5932 -0.6384 -0.0015 6 6 2.2638 -1.1045 -0.0005 7 7 2.0436 -2.4182 -0.0015 8 6 3.0482 -3.2669 -0.0022 9 7 4.3107 -2.8770 -0.0068 10 6 4.6328 -1.5882 -0.0006 11 7 5.9551 -1.1895 -0.0003 12 6 7.0227 -2.1927 -0.0007 13 6 8.3617 -1.5014 0.0003 14 8 8.4187 -0.2898 0.0008 15 7 9.4959 -2.2294 -0.0004 16 6 10.7142 -1.6004 0.0011 17 1 10.7649 -0.5217 0.0024 18 6 11.8835 -2.3510 0.0010 19 7 11.8218 -3.6636 -0.0001 20 14 13.5434 -1.4940 0.0023 21 1 13.9827 -1.2680 1.4027 22 1 14.5397 -2.3437 -0.6980 23 1 13.4273 -0.1890 -0.6968 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 4.3870 1.4378 -0.0011 28 1 2.8326 -4.3252 -0.0026 29 1 6.1770 -0.2452 0.0002 30 1 6.9355 -2.8164 0.8889 31 1 6.9356 -2.8156 -0.8911 32 1 9.4504 -3.1983 -0.0011 33 1 12.6381 -4.1875 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321814855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:35 Heat of formation + Delta-G solvation = 62.954404 kcal Electronic energy + Delta-G solvation = -20052.188345 eV Core-core repulsion = 16727.937886 eV Total energy + Delta-G solvation = -3324.250459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.96223 -40.47458 -39.79999 -37.29636 -35.98975 -34.40618 -33.37041 -33.09775 -31.44059 -28.95328 -27.80087 -26.30734 -25.22703 -23.84580 -21.78432 -21.37320 -20.11813 -19.56508 -18.66064 -18.18072 -17.18294 -17.13184 -16.88521 -16.35879 -16.12498 -15.67706 -15.31319 -15.16162 -15.12923 -14.91710 -14.02057 -14.01460 -13.53636 -13.48910 -13.45448 -12.94009 -12.49933 -12.44108 -12.41467 -12.12048 -11.68438 -11.55466 -10.76171 -10.54368 -10.22336 -10.08251 -9.96045 -9.06068 -8.49784 -5.99386 -0.21807 0.39268 1.14796 1.37375 1.40069 1.44177 1.55912 1.86307 1.93024 2.30954 2.89643 3.01936 3.16843 3.18052 3.26400 3.53854 3.70014 3.90621 4.21060 4.34772 4.40516 4.44490 4.50238 4.50626 4.65617 4.99269 5.28142 5.39785 5.57708 5.76243 5.94892 6.02904 6.32420 6.50330 6.55296 7.05697 7.32412 7.46504 7.97115 8.66960 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.003292 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.168061 B = 8502.771347 C = 9125.492357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.389 5.389 3 N -0.276 5.276 4 C 0.110 3.890 5 C -0.353 4.353 6 C 0.353 3.647 7 N -0.592 5.592 8 C 0.388 3.612 9 N -0.622 5.622 10 C 0.515 3.485 11 N -0.672 5.672 12 C 0.133 3.867 13 C 0.430 3.570 14 O -0.627 6.627 15 N -0.558 5.558 16 C -0.337 4.337 17 H 0.085 0.915 18 C -0.009 4.009 19 N -0.914 5.914 20 Si 0.994 3.006 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.271 1.271 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.218 0.782 28 H 0.240 0.760 29 H 0.422 0.578 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.400 0.600 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 0.929 -0.073 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.178 5.178 3 N -0.090 5.090 4 C -0.085 4.085 5 C -0.371 4.371 6 C 0.106 3.894 7 N -0.321 5.321 8 C 0.096 3.904 9 N -0.353 5.353 10 C 0.262 3.738 11 N -0.304 5.304 12 C 0.006 3.994 13 C 0.217 3.783 14 O -0.515 6.515 15 N -0.193 5.193 16 C -0.466 4.466 17 H 0.103 0.897 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.817 3.183 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.196 1.196 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.234 0.766 28 H 0.255 0.745 29 H 0.263 0.737 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.235 0.765 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.113 1.581 -0.085 19.179 hybrid contribution 1.688 0.314 0.033 1.717 sum -17.425 1.895 -0.052 17.528 Atomic orbital electron populations 1.22112 0.71161 1.05659 1.04486 1.48585 1.07514 0.99840 1.61910 1.76936 1.02190 1.07415 1.22466 1.24078 0.95798 0.92872 0.95792 1.19720 0.94979 0.95993 1.26408 1.19192 0.88185 0.89098 0.92952 1.67639 1.37635 0.98926 1.27933 1.25371 0.80616 1.00643 0.83745 1.68157 1.23507 1.14234 1.29396 1.18123 0.84066 0.88504 0.83125 1.44325 1.00940 1.10636 1.74480 1.20846 0.83194 0.90353 1.05052 1.20533 0.86489 0.87766 0.83523 1.90485 1.87537 1.15384 1.58127 1.41819 1.04642 1.09524 1.63349 1.19709 0.83236 0.93303 1.50350 0.89716 1.26068 1.02945 0.96085 0.95848 1.69665 1.31116 1.05378 1.49284 0.84916 0.76719 0.77997 0.78668 1.19643 1.19680 1.19561 0.89809 0.87797 0.88274 0.76605 0.74451 0.73742 0.87939 0.87926 0.76533 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.61 11.47 127.77 1.47 3.08 16 2 N -0.39 -9.65 4.05 -366.69 -1.48 -11.13 16 3 N -0.28 -7.21 12.45 -56.46 -0.70 -7.92 16 4 C 0.11 2.79 11.87 85.65 1.02 3.81 16 5 C -0.35 -10.08 6.14 -21.29 -0.13 -10.21 16 6 C 0.35 9.84 8.04 134.15 1.08 10.92 16 7 N -0.59 -15.35 10.47 -198.09 -2.07 -17.42 16 8 C 0.39 9.00 12.24 180.87 2.21 11.22 16 9 N -0.62 -17.23 9.69 -197.01 -1.91 -19.14 16 10 C 0.52 15.20 7.55 133.64 1.01 16.21 16 11 N -0.67 -20.73 5.65 -347.73 -1.97 -22.70 16 12 C 0.13 4.37 6.21 85.63 0.53 4.90 16 13 C 0.43 18.81 7.85 87.66 0.69 19.50 16 14 O -0.63 -31.30 15.24 -3.07 -0.05 -31.34 16 15 N -0.56 -26.86 5.29 -306.99 -1.62 -28.48 16 16 C -0.34 -18.09 9.68 84.04 0.81 -17.28 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 19 N -0.91 -47.38 13.05 21.66 0.28 -47.10 16 20 Si 0.99 41.04 29.55 68.60 2.03 43.07 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.22 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.24 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.42 13.23 7.30 -92.71 -0.68 12.55 16 30 H 0.10 3.12 8.14 -2.38 -0.02 3.11 16 31 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 32 H 0.40 18.34 7.90 -92.71 -0.73 17.61 16 33 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -67.10 300.82 1.43 -65.67 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.22 Total: 34.30 kcal Atomic # 6 Polarization: 33.03 SS G_CDS: 9.15 Total: 42.19 kcal Atomic # 7 Polarization: -144.40 SS G_CDS: -9.48 Total: -153.88 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.05 Total: -31.34 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -67.10 1.43 -65.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321814855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.622 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds