Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34805 * 125.50927 * 2 1 4 4 C 1.37751 * 108.54504 * 179.97438 * 3 2 1 5 5 C 1.47437 * 134.73366 * 179.97438 * 4 3 2 6 6 N 1.31830 * 121.36279 * 359.97438 * 5 4 3 7 7 C 1.46493 * 119.99691 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47128 * 120.00279 * 7 6 5 9 9 O 1.21297 * 119.99667 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72554 * 8 7 6 11 11 C 1.37095 * 119.99878 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00160 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00380 * 179.97438 * 11 10 8 14 14 N 1.31404 * 120.00261 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99599 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99834 * 15 13 11 17 17 H 1.48506 * 109.47143 * 209.99780 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99495 * 15 13 11 19 19 N 1.35233 * 117.27012 * 180.27421 * 5 4 3 20 20 C 1.31056 * 120.84368 * 359.46884 * 19 5 4 21 21 N 1.32273 * 123.85148 * 0.54808 * 20 19 5 22 22 C 1.32306 * 121.84377 * 359.73318 * 21 20 19 23 23 N 1.37058 * 134.48663 * 179.97438 * 22 21 20 24 24 H 0.97004 * 126.05584 * 0.03930 * 23 22 21 25 25 H 1.09000 * 109.47344 * 270.02535 * 1 2 3 26 26 H 1.08998 * 109.47369 * 30.02817 * 1 2 3 27 27 H 1.09006 * 109.47075 * 150.02874 * 1 2 3 28 28 H 1.08004 * 125.72917 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47786 * 0.02562 * 7 6 5 30 30 H 1.08998 * 109.47558 * 240.00415 * 7 6 5 31 31 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 32 32 H 0.97009 * 120.00065 * 180.02562 * 14 13 11 33 33 H 1.08000 * 118.07309 * 180.30456 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2479 1.0973 0.0000 4 6 3.5655 0.6954 0.0006 5 6 4.8636 1.3944 0.0004 6 7 4.9340 2.7109 -0.0010 7 6 6.2400 3.3745 -0.0006 8 6 6.3671 4.2341 -1.2319 9 8 5.4564 4.2867 -2.0313 10 7 7.4906 4.9482 -1.4421 11 6 7.6060 5.7306 -2.5620 12 1 6.7967 5.7744 -3.2759 13 6 8.7640 6.4673 -2.7786 14 7 8.8747 7.2168 -3.8523 15 14 10.1640 6.3910 -1.5442 16 1 11.0911 5.2917 -1.9144 17 1 10.8992 7.6813 -1.5493 18 1 9.6146 6.1397 -0.1877 19 7 5.9791 0.6299 -0.0046 20 6 5.8972 -0.6781 0.0014 21 7 4.7548 -1.3448 0.0020 22 6 3.5854 -0.7260 0.0016 23 7 2.2792 -1.1411 0.0016 24 1 1.9725 -2.0613 0.0024 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5134 28 1 1.9006 2.1200 -0.0004 29 1 7.0296 2.6230 0.0005 30 1 6.3305 3.9981 0.8888 31 1 8.2173 4.9092 -0.8008 32 1 9.6834 7.7308 -4.0037 33 1 6.8165 -1.2449 0.0021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325844843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = 139.370174 kcal Electronic energy + Delta-G solvation = -20131.787310 eV Core-core repulsion = 16810.850488 eV Total energy + Delta-G solvation = -3320.936822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14358 -38.86663 -37.95720 -35.07086 -33.74281 -33.43695 -31.95902 -31.43512 -30.89875 -28.26038 -26.41961 -24.14794 -23.82026 -22.59930 -21.56199 -19.13467 -18.72836 -18.27963 -17.73218 -16.52462 -16.28232 -15.67156 -15.58827 -15.06545 -14.65570 -14.39849 -14.22437 -13.80536 -13.59968 -13.30797 -13.07755 -12.84614 -12.38068 -11.98754 -11.61655 -11.31134 -10.97910 -10.75130 -10.41709 -9.82659 -9.72969 -9.65628 -9.35465 -8.94473 -8.60138 -8.22232 -7.95942 -6.96718 -6.12324 -3.62099 0.34310 0.66653 1.86043 2.50711 2.86673 3.20427 3.24380 3.29695 3.98897 4.05999 4.20219 4.24128 4.28777 4.33213 4.35751 4.62765 4.68249 4.81126 4.96286 5.12234 5.21587 5.43833 5.86152 6.01498 6.21217 6.26583 6.30700 6.52903 6.67517 6.84994 7.58310 7.78208 8.34017 8.50343 8.79317 8.86283 9.16898 9.65232 10.10891 11.01516 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.003758 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.854558 B = 7448.942642 C = 8012.973528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.364 5.364 3 C 0.227 3.773 4 C -0.278 4.278 5 C 0.387 3.613 6 N -0.507 5.507 7 C 0.036 3.964 8 C 0.465 3.535 9 O -0.567 6.567 10 N -0.598 5.598 11 C -0.298 4.298 12 H 0.117 0.883 13 C 0.038 3.962 14 N -0.889 5.889 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.268 1.268 19 N -0.611 5.611 20 C 0.397 3.603 21 N -0.643 5.643 22 C 0.462 3.538 23 N -0.475 5.475 24 H 0.451 0.549 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.214 0.786 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.370 0.630 32 H 0.271 0.729 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.869 -19.434 12.490 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.150 5.150 3 C 0.081 3.919 4 C -0.297 4.297 5 C 0.107 3.893 6 N -0.227 5.227 7 C -0.098 4.098 8 C 0.251 3.749 9 O -0.448 6.448 10 N -0.238 5.238 11 C -0.427 4.427 12 H 0.135 0.865 13 C -0.164 4.164 14 N -0.531 5.531 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.194 1.194 19 N -0.338 5.338 20 C 0.098 3.902 21 N -0.382 5.382 22 C 0.203 3.797 23 N -0.202 5.202 24 H 0.300 0.700 25 H 0.103 0.897 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.231 0.769 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.203 0.797 32 H 0.081 0.919 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.412 -18.714 11.801 28.784 hybrid contribution 1.038 -0.483 0.794 1.394 sum -17.374 -19.197 12.595 28.793 Atomic orbital electron populations 1.22334 0.71284 1.06245 1.04642 1.46202 1.04313 0.97057 1.67472 1.22855 0.89546 0.91440 0.88090 1.19736 0.93837 0.94132 1.21977 1.20157 0.84486 0.90927 0.93752 1.73109 1.25050 1.04784 1.19782 1.21679 0.92882 0.97897 0.97357 1.19835 0.83482 0.83474 0.88156 1.90511 1.39610 1.66890 1.47775 1.42197 1.15826 1.42938 1.22847 1.19425 1.03923 1.20255 0.99116 0.86548 1.25001 0.97676 0.96759 0.96928 1.69631 1.28237 1.29006 1.26185 0.86661 0.82887 0.78492 0.81357 1.19678 1.20392 1.19372 1.69469 1.30475 1.07267 1.26591 1.24266 0.93091 0.88082 0.84738 1.67330 0.94764 1.40488 1.35647 1.18532 0.85306 0.89216 0.86657 1.43615 0.99959 1.01917 1.74703 0.70029 0.89719 0.87042 0.88946 0.76912 0.90258 0.89607 0.79692 0.91882 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.01 11.43 59.84 0.68 0.68 16 2 N -0.36 -1.94 3.99 -67.54 -0.27 -2.20 16 3 C 0.23 2.05 11.50 -16.42 -0.19 1.86 16 4 C -0.28 -3.96 6.37 -104.83 -0.67 -4.63 16 5 C 0.39 7.41 7.65 -155.65 -1.19 6.22 16 6 N -0.51 -10.98 10.13 -60.18 -0.61 -11.59 16 7 C 0.04 0.80 6.84 -5.19 -0.04 0.77 16 8 C 0.46 12.61 7.85 -10.98 -0.09 12.53 16 9 O -0.57 -17.60 16.01 5.54 0.09 -17.51 16 10 N -0.60 -16.29 5.09 -10.96 -0.06 -16.34 16 11 C -0.30 -9.24 10.16 -14.93 -0.15 -9.39 16 12 H 0.12 4.07 7.39 -52.48 -0.39 3.68 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 14 N -0.89 -27.63 13.96 55.50 0.77 -26.86 16 15 Si 0.88 21.11 27.74 -169.99 -4.71 16.40 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -5.97 6.52 56.52 0.37 -5.60 16 19 N -0.61 -11.40 8.94 -12.76 -0.11 -11.51 16 20 C 0.40 5.96 12.17 -92.37 -1.12 4.84 16 21 N -0.64 -8.90 10.39 -13.71 -0.14 -9.04 16 22 C 0.46 5.67 8.57 -155.80 -1.33 4.33 16 23 N -0.48 -3.26 7.31 31.35 0.23 -3.03 16 24 H 0.45 1.52 8.96 -182.54 -1.64 -0.11 16 25 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.11 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.21 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.08 1.72 6.75 -51.93 -0.35 1.37 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.37 8.98 5.76 -40.82 -0.24 8.74 16 32 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -44.52 298.18 -8.83 -53.34 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.31 Total: 5.63 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: -4.19 Total: 18.23 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -0.19 Total: -80.58 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.09 Total: -17.51 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -44.52 -8.83 -53.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325844843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.713 kcal (2) G-P(sol) polarization free energy of solvation -44.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds