Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34805 * 125.50927 * 2 1 4 4 C 1.37751 * 108.54504 * 179.97438 * 3 2 1 5 5 C 1.47437 * 134.73366 * 179.97438 * 4 3 2 6 6 N 1.31830 * 121.36279 * 359.97438 * 5 4 3 7 7 C 1.46493 * 119.99691 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47128 * 120.00279 * 7 6 5 9 9 O 1.21297 * 119.99667 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72554 * 8 7 6 11 11 C 1.37095 * 119.99878 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00160 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00380 * 179.97438 * 11 10 8 14 14 N 1.31404 * 120.00261 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99599 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99834 * 15 13 11 17 17 H 1.48506 * 109.47143 * 209.99780 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99495 * 15 13 11 19 19 N 1.35233 * 117.27012 * 180.27421 * 5 4 3 20 20 C 1.31056 * 120.84368 * 359.46884 * 19 5 4 21 21 N 1.32273 * 123.85148 * 0.54808 * 20 19 5 22 22 C 1.32306 * 121.84377 * 359.73318 * 21 20 19 23 23 N 1.37058 * 134.48663 * 179.97438 * 22 21 20 24 24 H 0.97004 * 126.05584 * 0.03930 * 23 22 21 25 25 H 1.09000 * 109.47344 * 270.02535 * 1 2 3 26 26 H 1.08998 * 109.47369 * 30.02817 * 1 2 3 27 27 H 1.09006 * 109.47075 * 150.02874 * 1 2 3 28 28 H 1.08004 * 125.72917 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47786 * 0.02562 * 7 6 5 30 30 H 1.08998 * 109.47558 * 240.00415 * 7 6 5 31 31 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 32 32 H 0.97009 * 120.00065 * 180.02562 * 14 13 11 33 33 H 1.08000 * 118.07309 * 180.30456 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2479 1.0973 0.0000 4 6 3.5655 0.6954 0.0006 5 6 4.8636 1.3944 0.0004 6 7 4.9340 2.7109 -0.0010 7 6 6.2400 3.3745 -0.0006 8 6 6.3671 4.2341 -1.2319 9 8 5.4564 4.2867 -2.0313 10 7 7.4906 4.9482 -1.4421 11 6 7.6060 5.7306 -2.5620 12 1 6.7967 5.7744 -3.2759 13 6 8.7640 6.4673 -2.7786 14 7 8.8747 7.2168 -3.8523 15 14 10.1640 6.3910 -1.5442 16 1 11.0911 5.2917 -1.9144 17 1 10.8992 7.6813 -1.5493 18 1 9.6146 6.1397 -0.1877 19 7 5.9791 0.6299 -0.0046 20 6 5.8972 -0.6781 0.0014 21 7 4.7548 -1.3448 0.0020 22 6 3.5854 -0.7260 0.0016 23 7 2.2792 -1.1411 0.0016 24 1 1.9725 -2.0613 0.0024 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5134 28 1 1.9006 2.1200 -0.0004 29 1 7.0296 2.6230 0.0005 30 1 6.3305 3.9981 0.8888 31 1 8.2173 4.9092 -0.8008 32 1 9.6834 7.7308 -4.0037 33 1 6.8165 -1.2449 0.0021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325844843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = 101.900397 kcal Electronic energy + Delta-G solvation = -20133.412121 eV Core-core repulsion = 16810.850488 eV Total energy + Delta-G solvation = -3322.561634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.99409 -40.24109 -39.70159 -36.38128 -35.82573 -34.27538 -33.73419 -32.83093 -32.01353 -29.42218 -27.66656 -26.01347 -24.67629 -23.59111 -22.62752 -21.25964 -20.24825 -19.59678 -18.77762 -17.73905 -17.34181 -17.16595 -16.72681 -16.43952 -16.25242 -15.61486 -15.30450 -15.10384 -14.85307 -14.67124 -14.46271 -14.12603 -13.62450 -13.53170 -13.24274 -12.88190 -12.41966 -12.34164 -11.96652 -11.85170 -11.51603 -10.82183 -10.58001 -10.32579 -10.23648 -10.12332 -9.76449 -8.41185 -8.16540 -6.01170 -0.53669 0.04308 0.86129 1.30799 1.34061 1.35843 1.44943 1.98539 2.12404 2.23875 2.88851 3.14643 3.25699 3.35417 3.39878 3.75894 3.87968 3.90421 4.20420 4.34561 4.38628 4.41338 4.63954 4.66758 4.72426 4.93668 5.15357 5.38157 5.55998 5.78926 5.93361 6.07892 6.56794 6.60893 6.87711 7.23200 7.42073 7.70830 7.98871 8.76880 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.003758 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.854558 B = 7448.942642 C = 8012.973528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.323 5.323 3 C 0.262 3.738 4 C -0.338 4.338 5 C 0.394 3.606 6 N -0.577 5.577 7 C 0.057 3.943 8 C 0.458 3.542 9 O -0.616 6.616 10 N -0.594 5.594 11 C -0.329 4.329 12 H 0.053 0.947 13 C -0.013 4.013 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.237 1.237 19 N -0.667 5.667 20 C 0.402 3.598 21 N -0.654 5.654 22 C 0.449 3.551 23 N -0.448 5.448 24 H 0.471 0.529 25 H 0.112 0.888 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.240 0.760 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.388 0.612 32 H 0.280 0.720 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.644 -21.684 14.815 32.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.103 5.103 3 C 0.108 3.892 4 C -0.357 4.357 5 C 0.116 3.884 6 N -0.302 5.302 7 C -0.077 4.077 8 C 0.246 3.754 9 O -0.500 6.500 10 N -0.236 5.236 11 C -0.459 4.459 12 H 0.071 0.929 13 C -0.211 4.211 14 N -0.575 5.575 15 Si 0.784 3.216 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.161 1.161 19 N -0.399 5.399 20 C 0.105 3.895 21 N -0.394 5.394 22 C 0.192 3.808 23 N -0.175 5.175 24 H 0.324 0.676 25 H 0.131 0.869 26 H 0.153 0.847 27 H 0.138 0.862 28 H 0.256 0.744 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.223 0.777 32 H 0.090 0.910 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -20.351 -21.152 14.145 32.583 hybrid contribution 1.073 -0.039 -0.018 1.074 sum -19.279 -21.191 14.127 31.942 Atomic orbital electron populations 1.23095 0.66928 1.08799 1.07274 1.47022 1.06010 0.95768 1.61515 1.23284 0.88296 0.93251 0.84369 1.19740 0.94354 0.94938 1.26641 1.20716 0.86730 0.90688 0.90218 1.73160 1.23271 1.06030 1.27756 1.21384 0.94572 0.97130 0.94581 1.21021 0.82331 0.82862 0.89180 1.90449 1.41307 1.68379 1.49895 1.42048 1.16739 1.42616 1.22150 1.19028 1.03489 1.23152 1.00182 0.92857 1.26075 1.00624 0.94989 0.99445 1.69795 1.29751 1.29434 1.28499 0.85367 0.77802 0.79336 0.79069 1.18142 1.19127 1.16103 1.69447 1.31166 1.08673 1.30599 1.24821 0.94648 0.87489 0.82540 1.67379 0.95158 1.40125 1.36765 1.18636 0.86545 0.88826 0.86838 1.43750 0.98550 1.03324 1.71891 0.67553 0.86946 0.84724 0.86206 0.74371 0.90208 0.88134 0.77665 0.91035 0.77227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.48 11.43 127.77 1.46 0.98 16 2 N -0.32 -1.88 3.99 -367.60 -1.47 -3.35 16 3 C 0.26 3.95 11.50 84.12 0.97 4.92 16 4 C -0.34 -9.35 6.37 -20.00 -0.13 -9.48 16 5 C 0.39 15.60 7.65 136.69 1.05 16.64 16 6 N -0.58 -26.06 10.13 -344.31 -3.49 -29.55 16 7 C 0.06 2.68 6.84 85.64 0.59 3.26 16 8 C 0.46 26.20 7.85 87.66 0.69 26.89 16 9 O -0.62 -40.92 16.01 -3.08 -0.05 -40.97 16 10 N -0.59 -33.54 5.09 -306.98 -1.56 -35.10 16 11 C -0.33 -21.57 10.16 84.04 0.85 -20.72 16 12 H 0.05 4.07 7.39 -2.91 -0.02 4.05 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 14 N -0.93 -59.90 13.96 21.66 0.30 -59.60 16 15 Si 0.96 43.33 27.74 68.60 1.90 45.23 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.24 -9.45 6.52 99.48 0.65 -8.81 16 19 N -0.67 -25.80 8.94 -194.29 -1.74 -27.53 16 20 C 0.40 12.21 12.17 180.96 2.20 14.41 16 21 N -0.65 -17.62 10.39 -197.28 -2.05 -19.67 16 22 C 0.45 10.24 8.57 134.50 1.15 11.39 16 23 N -0.45 -4.41 7.31 -54.72 -0.40 -4.81 16 24 H 0.47 1.03 8.96 -213.27 -1.91 -0.89 16 25 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 26 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 27 H 0.12 -1.20 8.14 -2.38 -0.02 -1.22 16 28 H 0.24 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.08 3.62 6.75 -2.39 -0.02 3.60 16 30 H 0.10 4.14 8.14 -2.39 -0.02 4.12 16 31 H 0.39 18.78 5.76 -92.71 -0.53 18.25 16 32 H 0.28 16.30 8.31 -92.70 -0.77 15.53 16 33 H 0.21 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -108.30 298.18 -0.57 -108.87 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -1.32 Total: 18.49 kcal Atomic # 6 Polarization: 38.69 SS G_CDS: 9.30 Total: 47.99 kcal Atomic # 7 Polarization: -169.21 SS G_CDS: -10.40 Total: -179.61 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.05 Total: -40.97 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.90 Total: 45.23 kcal Total: -108.30 -0.57 -108.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325844843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.772 kcal (2) G-P(sol) polarization free energy of solvation -108.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds