Wall clock time and date at job start Mon Mar 30 2020 02:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.20826 * 120.00132 * 239.99872 * 12 2 1 14 14 O 1.34230 * 120.00143 * 60.00078 * 12 2 1 15 15 C 1.45197 * 116.99857 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46840 * 179.97438 * 15 14 12 17 17 C 1.38261 * 119.98087 * 269.72173 * 16 15 14 18 18 C 1.38301 * 120.04119 * 179.78869 * 17 16 15 19 19 C 1.37969 * 119.91873 * 0.46852 * 18 17 16 20 20 C 1.38601 * 120.03695 * 359.78974 * 19 18 17 21 21 C 1.37972 * 120.04329 * 359.97403 * 20 19 18 22 22 C 1.51080 * 107.27169 * 179.97438 * 20 19 18 23 23 O 1.43943 * 105.95841 * 17.68197 * 22 20 19 24 24 C 1.43948 * 104.95031 * 331.56030 * 23 22 20 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47025 * 299.99530 * 15 14 12 30 30 H 1.08997 * 109.47133 * 60.00074 * 15 14 12 31 31 H 1.08002 * 119.98024 * 0.02562 * 17 16 15 32 32 H 1.07990 * 120.03930 * 180.25654 * 18 17 16 33 33 H 1.07992 * 120.04042 * 180.02562 * 21 20 19 34 34 H 1.08996 * 110.15930 * 136.80740 * 22 20 19 35 35 H 1.09003 * 110.15425 * 258.56457 * 22 20 19 36 36 H 1.08991 * 110.15578 * 147.56204 * 24 23 22 37 37 H 1.08997 * 110.15375 * 269.25033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 8 2.7270 -1.6927 -1.1198 14 8 1.7081 -0.2516 -2.4497 15 6 2.2268 -0.9861 -3.5897 16 6 1.7619 -0.3294 -4.8640 17 6 0.5737 -0.7237 -5.4508 18 6 0.1437 -0.1189 -6.6179 19 6 0.9066 0.8717 -7.2011 20 6 2.1003 1.2633 -6.6157 21 6 2.5269 0.6633 -5.4488 22 6 2.6901 2.3504 -7.4833 23 8 1.6101 2.8305 -8.3050 24 6 0.7236 1.7053 -8.4477 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7006 1.1552 3.4844 29 1 3.3163 -0.9858 -3.5570 30 1 1.8625 -2.0129 -3.5567 31 1 -0.0210 -1.5019 -4.9955 32 1 -0.7864 -0.4240 -7.0739 33 1 3.4568 0.9687 -4.9924 34 1 3.0771 3.1582 -6.8622 35 1 3.4847 1.9426 -8.1082 36 1 -0.3085 2.0475 -8.5225 37 1 0.9916 1.1258 -9.3310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327174516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:36 Heat of formation + Delta-G solvation = -105.081298 kcal Electronic energy + Delta-G solvation = -20439.270235 eV Core-core repulsion = 17146.688043 eV Total energy + Delta-G solvation = -3292.582192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88301 -39.60346 -37.77251 -35.69968 -33.90166 -32.32063 -31.70032 -30.58781 -28.53574 -26.75074 -25.21770 -24.24720 -22.87547 -21.94031 -20.87456 -19.81663 -16.95041 -16.70701 -16.65509 -16.41781 -16.06714 -15.99093 -15.28552 -14.98424 -14.49589 -14.25440 -13.80773 -13.31345 -13.08515 -12.86913 -12.81257 -12.70522 -12.26501 -11.89261 -11.62428 -11.35566 -11.10654 -11.05476 -10.80696 -10.72147 -10.34906 -10.32454 -10.09544 -10.07033 -9.26361 -9.06076 -9.01605 -8.66854 -8.45603 -6.11708 -4.17489 0.93059 1.14531 3.18810 3.27083 3.29907 3.35258 3.41923 3.65850 3.82909 3.98929 4.36895 4.41199 4.68109 4.78413 5.01630 5.06208 5.13001 5.20284 5.21803 5.28026 5.31923 5.47921 5.50304 5.68991 5.86361 6.06014 6.09855 6.12449 6.38978 6.45306 6.65292 6.70572 6.85883 6.86834 7.18098 7.42203 7.72934 7.93142 8.12598 8.81592 8.91938 9.48199 10.95635 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.003236 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.545939 B = 8649.257946 C = 8736.863559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.517 6.517 14 O -0.360 6.360 15 C 0.102 3.898 16 C -0.078 4.078 17 C -0.090 4.090 18 C -0.095 4.095 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.070 4.070 22 C 0.092 3.908 23 O -0.362 6.362 24 C 0.092 3.908 25 H 0.096 0.904 26 H 0.023 0.977 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 0.788 -20.157 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.404 6.404 14 O -0.279 6.279 15 C 0.028 3.972 16 C -0.078 4.078 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.088 4.088 22 C 0.016 3.984 23 O -0.281 6.281 24 C 0.015 3.985 25 H 0.115 0.885 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.508 0.810 -20.105 20.128 hybrid contribution 0.397 -0.799 0.896 1.264 sum -0.112 0.011 -19.209 19.209 Atomic orbital electron populations 1.21732 0.95580 1.00025 1.01780 1.18774 0.94892 0.96990 0.85452 0.91800 1.21138 1.31881 1.13351 0.88777 0.90625 1.24937 0.94866 0.95039 0.99137 1.69877 1.36398 1.22878 1.23880 0.86375 0.78488 0.80175 0.81738 1.20512 1.21116 1.19675 1.25413 0.76529 0.83227 0.83859 1.90499 1.36419 1.26768 1.86720 1.86711 1.70407 1.55688 1.15050 1.21598 0.98924 0.94873 0.81847 1.19610 0.95521 0.97197 0.95451 1.21111 0.95138 0.99632 0.94947 1.20351 0.99470 0.95845 0.95679 1.21060 0.96302 0.98271 0.97510 1.20972 0.96686 0.99475 0.96615 1.20312 1.00193 0.94740 0.93519 1.21743 0.89892 0.95240 0.91524 1.89083 1.34964 1.33175 1.70842 1.21737 0.95763 0.86649 0.94302 0.88528 0.95769 0.95001 0.92667 0.90787 0.90716 0.85000 0.85434 0.85312 0.88296 0.90508 0.88477 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.47 2.74 -92.92 -0.25 1.22 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.41 8.38 -34.44 -0.29 -14.70 16 5 H 0.08 2.21 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.82 11.31 55.43 0.63 -24.19 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.46 10.89 7.25 36.01 0.26 11.15 16 13 O -0.52 -13.06 15.21 -18.75 -0.29 -13.34 16 14 O -0.36 -7.18 10.11 -39.26 -0.40 -7.58 16 15 C 0.10 1.61 5.59 36.01 0.20 1.81 16 16 C -0.08 -1.05 5.52 -104.59 -0.58 -1.63 16 17 C -0.09 -1.08 9.70 -39.55 -0.38 -1.47 16 18 C -0.10 -1.00 10.04 -39.66 -0.40 -1.40 16 19 C -0.13 -1.43 6.32 -104.40 -0.66 -2.09 16 20 C -0.14 -1.58 6.32 -104.40 -0.66 -2.24 16 21 C -0.07 -0.87 9.70 -39.66 -0.38 -1.25 16 22 C 0.09 0.90 7.63 36.19 0.28 1.17 16 23 O -0.36 -4.02 11.72 -35.23 -0.41 -4.43 16 24 C 0.09 0.83 7.63 36.19 0.28 1.11 16 25 H 0.10 2.47 6.06 -51.93 -0.31 2.16 16 26 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -31.05 318.65 -7.91 -38.96 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.87 Total: -1.07 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.36 Total: -9.55 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.63 Total: -24.19 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.09 Total: -25.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.05 -7.91 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327174516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.117 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds