Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.20826 * 120.00132 * 239.99872 * 12 2 1 14 14 O 1.34230 * 120.00143 * 60.00078 * 12 2 1 15 15 C 1.45197 * 116.99857 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46840 * 179.97438 * 15 14 12 17 17 C 1.38261 * 119.98087 * 269.72173 * 16 15 14 18 18 C 1.38301 * 120.04119 * 179.78869 * 17 16 15 19 19 C 1.37969 * 119.91873 * 0.46852 * 18 17 16 20 20 C 1.38601 * 120.03695 * 359.78974 * 19 18 17 21 21 C 1.37972 * 120.04329 * 359.97403 * 20 19 18 22 22 C 1.51080 * 107.27169 * 179.97438 * 20 19 18 23 23 O 1.43943 * 105.95841 * 17.68197 * 22 20 19 24 24 C 1.43948 * 104.95031 * 331.56030 * 23 22 20 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47025 * 299.99530 * 15 14 12 30 30 H 1.08997 * 109.47133 * 60.00074 * 15 14 12 31 31 H 1.08002 * 119.98024 * 0.02562 * 17 16 15 32 32 H 1.07990 * 120.03930 * 180.25654 * 18 17 16 33 33 H 1.07992 * 120.04042 * 180.02562 * 21 20 19 34 34 H 1.08996 * 110.15930 * 136.80740 * 22 20 19 35 35 H 1.09003 * 110.15425 * 258.56457 * 22 20 19 36 36 H 1.08991 * 110.15578 * 147.56204 * 24 23 22 37 37 H 1.08997 * 110.15375 * 269.25033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 8 2.7270 -1.6927 -1.1198 14 8 1.7081 -0.2516 -2.4497 15 6 2.2268 -0.9861 -3.5897 16 6 1.7619 -0.3294 -4.8640 17 6 0.5737 -0.7237 -5.4508 18 6 0.1437 -0.1189 -6.6179 19 6 0.9066 0.8717 -7.2011 20 6 2.1003 1.2633 -6.6157 21 6 2.5269 0.6633 -5.4488 22 6 2.6901 2.3504 -7.4833 23 8 1.6101 2.8305 -8.3050 24 6 0.7236 1.7053 -8.4477 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7006 1.1552 3.4844 29 1 3.3163 -0.9858 -3.5570 30 1 1.8625 -2.0129 -3.5567 31 1 -0.0210 -1.5019 -4.9955 32 1 -0.7864 -0.4240 -7.0739 33 1 3.4568 0.9687 -4.9924 34 1 3.0771 3.1582 -6.8622 35 1 3.4847 1.9426 -8.1082 36 1 -0.3085 2.0475 -8.5225 37 1 0.9916 1.1258 -9.3310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327174516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = -122.099194 kcal Electronic energy + Delta-G solvation = -20440.008187 eV Core-core repulsion = 17146.688043 eV Total energy + Delta-G solvation = -3293.320144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77354 -41.27123 -38.75188 -37.32033 -35.93747 -33.39407 -32.58708 -32.50227 -29.41558 -27.80071 -27.28685 -25.36986 -24.49897 -22.74698 -21.88526 -21.60919 -18.66094 -18.06850 -17.78836 -17.75553 -17.40566 -17.11787 -16.85442 -16.33981 -15.85659 -15.29861 -14.93596 -14.70849 -14.42423 -14.18239 -13.94318 -13.75479 -13.48651 -13.44652 -13.00710 -12.83204 -12.79140 -12.62465 -12.38872 -12.30208 -12.06547 -11.98732 -11.64116 -11.17884 -11.12520 -11.00520 -10.54613 -9.92850 -9.57075 -8.20858 -6.34627 -0.01344 0.26773 1.40192 1.42725 1.43365 1.54334 1.89526 2.42234 2.70695 2.93567 3.09144 3.11924 3.57850 3.66199 3.88442 4.03803 4.12686 4.31981 4.38951 4.42508 4.46084 4.48219 4.57450 4.67348 4.74288 4.82617 4.88733 4.97898 4.98812 5.19736 5.25092 5.36102 5.44298 5.46397 5.66433 5.67968 5.84328 5.87139 6.08841 6.72041 7.01842 7.34491 8.85617 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.003236 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.545939 B = 8649.257946 C = 8736.863559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.474 3.526 13 O -0.541 6.541 14 O -0.359 6.359 15 C 0.100 3.900 16 C -0.100 4.100 17 C -0.097 4.097 18 C -0.094 4.094 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.080 4.080 22 C 0.092 3.908 23 O -0.381 6.381 24 C 0.090 3.910 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 0.816 -21.483 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.067 0.933 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.319 3.681 13 O -0.431 6.431 14 O -0.276 6.276 15 C 0.027 3.973 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.098 4.098 22 C 0.016 3.984 23 O -0.300 6.300 24 C 0.014 3.986 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.105 0.856 -21.457 21.502 hybrid contribution 0.561 -0.762 1.161 1.498 sum -0.545 0.094 -20.296 20.303 Atomic orbital electron populations 1.21554 0.94353 0.99955 1.01914 1.18692 0.95947 0.96126 0.86191 0.93260 1.21265 1.32635 1.13416 0.90469 0.92446 1.25650 0.94822 0.95670 1.01608 1.69960 1.36542 1.23490 1.24786 0.85457 0.78372 0.78778 0.78472 1.19830 1.19850 1.19952 1.24845 0.76007 0.82545 0.84666 1.90477 1.37459 1.27745 1.87381 1.86647 1.70104 1.55932 1.14958 1.21862 0.99172 0.95092 0.81168 1.19503 0.96992 0.98625 0.94854 1.21325 0.94640 0.99982 0.95581 1.20657 1.00370 0.95186 0.94936 1.21450 0.95821 0.98033 0.98020 1.21225 0.97324 0.99910 0.96467 1.20413 1.00489 0.94784 0.94149 1.21862 0.89993 0.94985 0.91578 1.89064 1.35615 1.34271 1.71010 1.21947 0.96424 0.86161 0.94031 0.90370 0.93495 0.95064 0.92224 0.90548 0.90199 0.84017 0.82428 0.84899 0.87718 0.88616 0.86852 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.90 71.98 0.64 -5.07 16 2 C 0.05 2.57 2.74 -12.29 -0.03 2.53 16 3 H 0.05 2.67 8.14 -2.38 -0.02 2.65 16 4 C -0.54 -30.85 8.38 25.60 0.21 -30.63 16 5 H 0.06 3.43 6.76 -2.91 -0.02 3.41 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -50.68 11.31 21.45 0.24 -50.44 16 8 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.47 22.51 7.25 71.24 0.52 23.03 16 13 O -0.54 -27.82 15.21 21.96 0.33 -27.48 16 14 O -0.36 -14.33 10.11 -51.42 -0.52 -14.85 16 15 C 0.10 3.16 5.59 71.24 0.40 3.56 16 16 C -0.10 -2.63 5.52 -19.84 -0.11 -2.74 16 17 C -0.10 -2.18 9.70 22.29 0.22 -1.97 16 18 C -0.09 -1.73 10.04 22.22 0.22 -1.51 16 19 C -0.13 -2.58 6.32 -19.72 -0.12 -2.70 16 20 C -0.15 -3.20 6.32 -19.72 -0.12 -3.33 16 21 C -0.08 -1.95 9.70 22.22 0.22 -1.73 16 22 C 0.09 1.61 7.63 71.36 0.54 2.16 16 23 O -0.38 -7.59 11.72 -148.98 -1.75 -9.34 16 24 C 0.09 1.37 7.63 71.36 0.54 1.91 16 25 H 0.08 4.02 6.06 -2.38 -0.01 4.01 16 26 H 0.05 1.96 8.11 -2.38 -0.02 1.94 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 30 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.16 1.89 8.06 -2.92 -0.02 1.87 16 33 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -65.98 318.65 4.98 -61.00 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.07 Total: 10.06 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 3.57 Total: -14.81 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.44 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -1.93 Total: -51.67 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.98 4.98 -61.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327174516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.099 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds