Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46954 * 60.00173 * 8 6 4 10 10 H 1.48503 * 109.47431 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47490 * 300.00258 * 8 6 4 12 12 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 13 13 O 1.20822 * 120.00288 * 120.00118 * 12 2 1 14 14 O 1.34233 * 119.99906 * 299.99908 * 12 2 1 15 15 C 1.45204 * 116.99847 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.47318 * 180.02562 * 15 14 12 17 17 C 1.38257 * 119.97973 * 269.73029 * 16 15 14 18 18 C 1.38298 * 120.04410 * 179.78422 * 17 16 15 19 19 C 1.37972 * 119.91609 * 0.46488 * 18 17 16 20 20 C 1.38594 * 120.03842 * 359.78872 * 19 18 17 21 21 C 1.37974 * 120.04114 * 359.97303 * 20 19 18 22 22 C 1.51081 * 107.27287 * 179.97438 * 20 19 18 23 23 O 1.43939 * 105.95651 * 17.68935 * 22 20 19 24 24 C 1.43951 * 104.94744 * 331.55124 * 23 22 20 25 25 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47347 * 300.00264 * 15 14 12 30 30 H 1.09002 * 109.47079 * 60.00117 * 15 14 12 31 31 H 1.08000 * 119.98123 * 359.97438 * 17 16 15 32 32 H 1.07995 * 120.04284 * 180.24850 * 18 17 16 33 33 H 1.07998 * 120.03904 * 180.02562 * 21 20 19 34 34 H 1.09008 * 110.15308 * 136.80517 * 22 20 19 35 35 H 1.08997 * 110.15769 * 258.56323 * 22 20 19 36 36 H 1.08995 * 110.15063 * 147.56708 * 24 23 22 37 37 H 1.09003 * 110.15113 * 269.25791 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8281 -2.5198 -4.0080 10 1 1.8280 -0.4193 -5.2204 11 1 3.8076 -1.1191 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6928 1.1197 14 8 1.7080 -0.2518 2.4496 15 6 2.2276 -0.9857 3.5897 16 6 1.7626 -0.3292 4.8640 17 6 2.5295 0.6599 5.4514 18 6 2.1018 1.2663 6.6184 19 6 0.9135 0.8763 7.2011 20 6 0.1474 -0.1190 6.6151 21 6 0.5717 -0.7205 5.4482 22 6 -1.0744 -0.3137 7.4823 23 8 -1.1681 0.8643 8.3041 24 6 0.1878 1.3258 8.4476 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7090 1.1614 -3.4844 29 1 1.8642 -2.0128 3.5570 30 1 3.3171 -0.9845 3.5567 31 1 3.4616 0.9614 4.9969 32 1 2.6988 2.0418 7.0750 33 1 -0.0256 -1.4957 4.9914 34 1 -1.9647 -0.4097 6.8607 35 1 -0.9545 -1.1988 8.1069 36 1 0.2085 2.4130 8.5227 37 1 0.6448 0.8799 9.3310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327174517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = -105.077483 kcal Electronic energy + Delta-G solvation = -20449.177700 eV Core-core repulsion = 17156.595673 eV Total energy + Delta-G solvation = -3292.582027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88305 -39.60305 -37.77276 -35.69925 -33.89849 -32.32046 -31.69988 -30.58777 -28.53617 -26.74765 -25.21418 -24.25414 -22.86708 -21.94005 -20.87745 -19.81500 -16.92642 -16.77506 -16.63163 -16.43073 -16.04780 -15.82384 -15.55579 -14.87115 -14.49847 -14.15236 -13.89697 -13.35545 -13.07779 -12.86952 -12.81154 -12.62851 -12.29660 -11.93095 -11.56597 -11.36971 -11.11990 -11.04558 -10.81073 -10.70898 -10.37040 -10.31501 -10.09507 -10.07094 -9.26410 -9.06924 -9.01491 -8.66879 -8.45161 -6.11488 -4.17372 0.93066 1.14573 3.18829 3.27318 3.32040 3.34643 3.39951 3.65944 3.82870 3.99040 4.36975 4.41215 4.68096 4.78417 5.01637 5.06246 5.13109 5.20567 5.21622 5.28075 5.31918 5.47988 5.50261 5.69053 5.86385 6.06102 6.09824 6.12488 6.38951 6.45368 6.65555 6.70589 6.86020 6.87015 7.18131 7.42302 7.73047 7.93129 8.12719 8.81508 8.91757 9.48210 10.95824 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038198 B = 0.003275 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.850331 B = 8547.963767 C = 8786.638733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.517 6.517 14 O -0.360 6.360 15 C 0.102 3.898 16 C -0.078 4.078 17 C -0.091 4.091 18 C -0.096 4.096 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.069 4.069 22 C 0.092 3.908 23 O -0.362 6.362 24 C 0.092 3.908 25 H 0.023 0.977 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 0.523 20.146 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.404 6.404 14 O -0.279 6.279 15 C 0.028 3.972 16 C -0.078 4.078 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.087 4.087 22 C 0.016 3.984 23 O -0.281 6.281 24 C 0.015 3.985 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.080 0.425 20.091 20.125 hybrid contribution 0.644 -0.641 -0.891 1.273 sum -0.436 -0.216 19.201 19.207 Atomic orbital electron populations 1.21733 0.95581 1.00032 1.01765 1.18767 0.94885 0.96977 0.85434 0.91799 1.21097 1.32055 1.13298 0.88795 0.90679 1.24938 0.94883 0.95007 0.99126 1.69872 1.36428 1.22746 1.23993 0.86428 0.79290 0.79666 0.81308 1.20073 1.21200 1.20077 1.25412 0.76523 0.83228 0.83858 1.90497 1.36427 1.26770 1.86720 1.86713 1.70379 1.55715 1.15050 1.21599 0.98909 0.94888 0.81848 1.19607 0.95086 0.97633 0.95454 1.21109 1.00039 0.94748 0.94961 1.20351 0.95200 1.00121 0.95683 1.21060 0.96295 0.98278 0.97511 1.20971 0.98023 0.98133 0.96610 1.20313 0.95236 0.99678 0.93507 1.21744 0.96316 0.88819 0.91525 1.89083 1.25061 1.43085 1.70832 1.21740 0.81751 1.00660 0.94302 0.95762 0.88558 0.94995 0.92608 0.90803 0.90700 0.84998 0.85433 0.85316 0.88294 0.90506 0.88478 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.49 2.74 -92.92 -0.25 1.23 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.47 10.90 7.25 36.01 0.26 11.16 16 13 O -0.52 -13.06 15.21 -18.75 -0.29 -13.34 16 14 O -0.36 -7.18 10.11 -39.27 -0.40 -7.58 16 15 C 0.10 1.61 5.59 36.00 0.20 1.81 16 16 C -0.08 -1.05 5.52 -104.60 -0.58 -1.63 16 17 C -0.09 -1.08 9.70 -39.55 -0.38 -1.47 16 18 C -0.10 -1.00 10.04 -39.66 -0.40 -1.40 16 19 C -0.13 -1.43 6.32 -104.40 -0.66 -2.09 16 20 C -0.14 -1.58 6.32 -104.40 -0.66 -2.24 16 21 C -0.07 -0.87 9.70 -39.66 -0.38 -1.25 16 22 C 0.09 0.90 7.63 36.19 0.28 1.17 16 23 O -0.36 -4.02 11.72 -35.23 -0.41 -4.43 16 24 C 0.09 0.83 7.63 36.19 0.28 1.11 16 25 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 26 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 30 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -31.03 318.67 -7.91 -38.94 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.87 Total: -1.04 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.36 Total: -9.56 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.63 Total: -24.20 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.09 Total: -25.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.03 -7.91 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327174517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.138 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds