Wall clock time and date at job start Mon Mar 30 2020 01:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38400 * 119.82691 * 2 1 4 4 C 1.37891 * 120.17316 * 180.27807 * 3 2 1 5 5 C 1.39855 * 119.82176 * 359.44249 * 4 3 2 6 6 C 1.47165 * 120.17018 * 180.29982 * 5 4 3 7 7 O 1.21249 * 120.00388 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99789 * 179.97438 * 6 5 4 9 9 O 1.45201 * 109.47195 * 179.97438 * 8 6 5 10 10 C 1.34228 * 117.00457 * 179.97438 * 9 8 6 11 11 O 1.20823 * 119.99842 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.00362 * 180.02562 * 10 9 8 13 13 H 1.09006 * 109.47286 * 60.00037 * 12 10 9 14 14 C 1.53007 * 109.47416 * 300.00352 * 12 10 9 15 15 C 1.50701 * 109.47614 * 180.02562 * 12 10 9 16 16 H 1.08003 * 119.99461 * 35.09670 * 15 12 10 17 17 C 1.37870 * 120.00393 * 215.10532 * 15 12 10 18 18 N 1.31513 * 120.00167 * 184.90868 * 17 15 12 19 19 Si 1.86803 * 119.99998 * 4.90715 * 17 15 12 20 20 H 1.48504 * 109.47116 * 84.82360 * 19 17 15 21 21 H 1.48493 * 109.47299 * 204.82567 * 19 17 15 22 22 H 1.48497 * 109.46928 * 324.82578 * 19 17 15 23 23 C 1.39851 * 119.65992 * 0.27755 * 5 4 3 24 24 C 1.37892 * 119.82366 * 0.02562 * 23 5 4 25 25 H 1.08996 * 109.47127 * 270.27901 * 1 2 3 26 26 H 1.09002 * 109.46893 * 30.28121 * 1 2 3 27 27 H 1.08995 * 109.46661 * 150.27842 * 1 2 3 28 28 H 1.07994 * 119.91756 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.09151 * 179.71494 * 4 3 2 30 30 H 1.08995 * 109.47338 * 299.99657 * 8 6 5 31 31 H 1.09004 * 109.47542 * 60.00108 * 8 6 5 32 32 H 1.09000 * 109.46750 * 295.06519 * 14 12 10 33 33 H 1.09004 * 109.46480 * 55.05503 * 14 12 10 34 34 H 1.08995 * 109.47320 * 175.05529 * 14 12 10 35 35 H 0.96999 * 119.99894 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.09052 * 180.02562 * 23 5 4 37 37 H 1.07996 * 119.91729 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5743 1.2090 -0.0058 5 6 4.2771 -0.0001 0.0001 6 6 5.7488 -0.0001 0.0007 7 8 6.3551 1.0499 -0.0045 8 6 6.5022 -1.3052 0.0077 9 8 7.9298 -1.0400 0.0062 10 6 8.7475 -2.1044 0.0125 11 8 8.2857 -3.2209 0.0184 12 6 10.2415 -1.9070 0.0120 13 1 10.5340 -1.3451 0.8991 14 6 10.6532 -1.1320 -1.2414 15 6 10.9257 -3.2498 0.0191 16 1 10.4891 -4.0810 -0.5147 17 6 12.1087 -3.4171 0.7070 18 7 12.7557 -4.5598 0.6345 19 14 12.7929 -2.0206 1.7420 20 1 12.1669 -2.0496 3.0884 21 1 14.2633 -2.1783 1.8763 22 1 12.4921 -0.7236 1.0842 23 6 3.5743 -1.2091 0.0060 24 6 2.1954 -1.2008 0.0054 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3632 -0.8925 -0.5095 28 1 1.6513 2.1335 -0.0004 29 1 4.1101 2.1467 -0.0104 30 1 6.2386 -1.8722 0.9005 31 1 6.2393 -1.8814 -0.8795 32 1 10.4404 -1.7323 -2.1259 33 1 10.0922 -0.1988 -1.2920 34 1 11.7200 -0.9128 -1.1989 35 1 13.5878 -4.6776 1.1187 36 1 4.1100 -2.1469 0.0110 37 1 1.6511 -2.1336 0.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327175501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:22 Heat of formation + Delta-G solvation = -106.985028 kcal Electronic energy + Delta-G solvation = -20226.118903 eV Core-core repulsion = 16933.454159 eV Total energy + Delta-G solvation = -3292.664744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40236 -39.55973 -38.40281 -35.70288 -33.82330 -33.35056 -31.53157 -31.34562 -29.40798 -27.13174 -25.30326 -23.41592 -22.97043 -22.30071 -20.00559 -19.73613 -17.37790 -17.14853 -16.51002 -16.13358 -15.99777 -15.58483 -15.30046 -14.57024 -14.41123 -14.25081 -14.05533 -13.87090 -13.69252 -12.92623 -12.63233 -12.56093 -12.32339 -12.16827 -12.11218 -11.95895 -11.37885 -11.29748 -11.12962 -10.78170 -10.42093 -10.23630 -9.95015 -9.80630 -9.33350 -9.26566 -9.23142 -9.05341 -8.65339 -6.16388 -4.18248 0.37699 1.04960 2.18655 2.99248 3.13592 3.26425 3.32865 3.33407 3.46582 4.06558 4.32522 4.40017 4.45604 4.63132 4.80321 4.98642 5.09002 5.15871 5.16983 5.22167 5.25585 5.29706 5.36966 5.64766 5.67050 5.82512 5.95667 6.08417 6.16873 6.18028 6.46985 6.51126 6.54952 6.80420 7.02422 7.19905 7.38702 7.47881 8.36252 8.71648 8.96035 9.41307 10.95847 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039589 B = 0.003287 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.101456 B = 8516.254165 C = 8869.456220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.057 4.057 3 C -0.135 4.135 4 C -0.055 4.055 5 C -0.168 4.168 6 C 0.396 3.604 7 O -0.427 6.427 8 C 0.016 3.984 9 O -0.351 6.351 10 C 0.463 3.537 11 O -0.501 6.501 12 C 0.026 3.974 13 H 0.066 0.934 14 C -0.135 4.135 15 C -0.506 4.506 16 H 0.088 0.912 17 C 0.077 3.923 18 N -0.888 5.888 19 Si 0.869 3.131 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.069 4.069 24 C -0.133 4.133 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.267 0.733 36 H 0.136 0.864 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.927 10.544 -0.984 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.057 4.057 3 C -0.153 4.153 4 C -0.073 4.073 5 C -0.169 4.169 6 C 0.271 3.729 7 O -0.300 6.300 8 C -0.059 4.059 9 O -0.269 6.269 10 C 0.306 3.694 11 O -0.386 6.386 12 C 0.006 3.994 13 H 0.084 0.916 14 C -0.193 4.193 15 C -0.544 4.544 16 H 0.106 0.894 17 C -0.126 4.126 18 N -0.525 5.525 19 Si 0.695 3.305 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.087 4.087 24 C -0.151 4.151 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.153 0.847 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.583 10.641 -0.927 24.982 hybrid contribution 0.266 0.323 0.660 0.781 sum -22.317 10.964 -0.267 24.866 Atomic orbital electron populations 1.20886 0.90811 1.03204 1.02748 1.20240 0.96438 0.93209 0.95839 1.21029 0.93844 0.97890 1.02487 1.21406 0.94035 0.97779 0.94104 1.20332 0.93966 0.94658 1.07907 1.22282 0.88081 0.90044 0.72452 1.90548 1.70862 1.34328 1.34266 1.23084 0.81446 0.96747 1.04624 1.86730 1.15480 1.39546 1.85183 1.25380 0.91132 0.81959 0.70926 1.90540 1.77412 1.25806 1.44885 1.19201 0.82774 0.99865 0.97543 0.91590 1.21935 1.01185 0.98002 0.98216 1.20744 1.06132 0.94227 1.33254 0.89382 1.24988 0.96298 0.95608 0.95748 1.69868 1.16530 1.24213 1.41870 0.86980 0.78617 0.83377 0.81527 1.19820 1.20919 1.18443 1.21551 0.94520 0.97463 0.95174 1.21048 0.93951 0.97928 1.02137 0.90649 0.91200 0.91119 0.85333 0.84665 0.88208 0.88212 0.92931 0.94155 0.92256 0.92246 0.84655 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.00 36.01 0.36 -0.24 16 2 C -0.06 -0.44 5.89 -104.50 -0.62 -1.05 16 3 C -0.13 -1.12 9.68 -39.65 -0.38 -1.50 16 4 C -0.06 -0.57 9.60 -39.10 -0.38 -0.95 16 5 C -0.17 -1.93 5.87 -105.06 -0.62 -2.55 16 6 C 0.40 5.71 7.20 -30.69 -0.22 5.49 16 7 O -0.43 -7.48 16.50 -14.08 -0.23 -7.71 16 8 C 0.02 0.25 4.56 36.01 0.16 0.41 16 9 O -0.35 -7.05 9.56 -45.90 -0.44 -7.49 16 10 C 0.46 10.67 7.25 36.00 0.26 10.93 16 11 O -0.50 -12.55 15.52 -18.75 -0.29 -12.84 16 12 C 0.03 0.63 2.41 -92.92 -0.22 0.40 16 13 H 0.07 1.57 5.29 -51.93 -0.27 1.30 16 14 C -0.14 -2.88 9.14 37.16 0.34 -2.55 16 15 C -0.51 -14.43 8.36 -34.44 -0.29 -14.72 16 16 H 0.09 2.80 7.62 -52.48 -0.40 2.40 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 18 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 19 Si 0.87 20.88 26.99 -169.99 -4.59 16.30 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.26 -5.88 6.82 56.52 0.39 -5.49 16 23 C -0.07 -0.66 9.47 -39.10 -0.37 -1.03 16 24 C -0.13 -1.07 9.68 -39.64 -0.38 -1.46 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.14 1.38 7.65 -52.49 -0.40 0.98 16 30 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16 31 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.14 1.11 7.05 -52.49 -0.37 0.74 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -33.72 324.89 -7.14 -40.85 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.80 Total: -1.19 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.45 Total: -6.69 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.96 Total: -28.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.59 Total: 16.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.72 -7.14 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327175501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.132 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds